The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	35022	46478	2086958		Synechococcus_phage(50.0%)	7	NA	NA
WP_173875641.1|35022_37131_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	26.9	1.9e-35
WP_173875642.1|37143_38493_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_173875643.1|38662_39370_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	38.8	1.8e-41
WP_173875644.1|39436_43162_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	26.1	4.8e-37
WP_173875645.1|43255_44698_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.1e-56
WP_173875646.1|44910_45930_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	R9TMC7	Synechococcus_phage	42.1	1.3e-61
WP_173875647.1|45926_46478_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	34.1	7.5e-24
>prophage 2
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	481711	488938	2086958		Streptococcus_phage(14.29%)	8	NA	NA
WP_173875873.1|481711_483508_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	37.5	8.8e-106
WP_125442967.1|483528_484311_+	deoxyribonuclease	NA	NA	NA	NA	NA
WP_173875874.1|485274_485943_+	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	26.5	5.6e-05
WP_000082575.1|486106_486598_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	61.7	9.0e-45
WP_173875875.1|486616_487333_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	48.1	7.4e-64
WP_070482978.1|487325_487769_-	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	62.2	1.2e-43
WP_000828768.1|487768_488422_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	55.2	4.1e-61
WP_001029581.1|488623_488938_-	thioredoxin	NA	A0A1J0GW78	Streptomyces_phage	47.2	8.6e-17
>prophage 3
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	566032	575362	2086958	protease	Streptococcus_phage(42.86%)	13	NA	NA
WP_153219943.1|566032_566998_+	glycosyltransferase	NA	V5USA4	Oenococcus_phage	49.8	1.9e-75
WP_173875911.1|567055_567253_-	ferredoxin	NA	NA	NA	NA	NA
WP_061590353.1|567298_567799_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_173875912.1|567808_568483_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_173875913.1|568602_569109_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	42.5	1.5e-26
WP_112445491.1|569108_569279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012972566.1|569315_570548_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.2	2.9e-132
WP_000422604.1|570556_571144_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_001140420.1|571154_571535_+	RidA family protein	NA	NA	NA	NA	NA
WP_084925753.1|571586_572477_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	3.0e-06
WP_060627753.1|572473_573451_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	96.3	4.7e-178
WP_173875914.1|573447_574359_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.0	5.8e-154
WP_173875915.1|574393_575362_-	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	92.7	1.2e-61
>prophage 4
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	981806	995204	2086958		Streptococcus_phage(71.43%)	11	NA	NA
WP_000873143.1|981806_981977_+	hypothetical protein	NA	A0A1X9I6E4	Streptococcus_phage	98.2	3.7e-22
WP_000417519.1|982362_983580_+	macrolide efflux MFS transporter Mef(A)	NA	A0A2K5B2B5	Erysipelothrix_phage	90.6	5.1e-198
WP_000420313.1|983699_985163_+	ABC-F type ribosomal protection protein Msr(D)	NA	A0A1B0RXA0	Streptococcus_phage	97.3	3.7e-251
WP_001072467.1|985280_985580_-	hypothetical protein	NA	A0A1B0RX98	Streptococcus_phage	96.0	1.8e-48
WP_000567222.1|985566_985935_-	hypothetical protein	NA	A0A1B0RXA8	Streptococcus_phage	97.5	1.1e-58
WP_000806926.1|985947_986283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001813542.1|986279_986525_-	hypothetical protein	NA	A0A1B0RXA7	Streptococcus_phage	98.8	2.6e-37
WP_153209484.1|987383_987947_+	DUF3990 domain-containing protein	NA	NA	NA	NA	NA
WP_033680325.1|987943_988156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_173876115.1|988509_988920_+	cell envelope biogenesis protein OmpA	NA	NA	NA	NA	NA
WP_000452057.1|988967_995204_+	DEAD/DEAH box helicase family protein	NA	A0A248SL14	Klebsiella_phage	30.4	1.0e-217
>prophage 5
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	1001674	1012221	2086958	integrase	Streptococcus_phage(77.78%)	11	999391:999405	1010227:1010241
999391:999405	attL	CAGATTTAGATTTTG	NA	NA	NA	NA
WP_050088029.1|1001674_1002571_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	28.7	1.5e-26
WP_001224318.1|1003700_1004633_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	3.1e-171
WP_001814923.1|1004877_1004994_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_173876118.1|1005009_1006929_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	98.1	0.0e+00
WP_000336323.1|1007047_1007215_+	cysteine-rich KTR domain-containing protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_001227347.1|1007274_1007628_-	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000804599.1|1008132_1008555_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	97.9	3.7e-71
WP_000857133.1|1008551_1008782_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000814512.1|1009238_1009442_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	97.0	2.0e-30
WP_045611710.1|1010783_1011401_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
1010227:1010241	attR	CAGATTTAGATTTTG	NA	NA	NA	NA
WP_173876119.1|1011510_1012221_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	28.0	1.2e-13
>prophage 6
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	1327469	1336727	2086958	transposase	Streptococcus_phage(77.78%)	11	NA	NA
WP_173876292.1|1327469_1328348_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.0	3.9e-115
WP_000358228.1|1328350_1328668_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_173876293.1|1328707_1329598_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	52.7	6.8e-75
WP_173876294.1|1329594_1330233_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	67.1	2.2e-75
WP_173876295.1|1330461_1331259_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	51.3	1.5e-60
WP_173876296.1|1331262_1332525_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	2.3e-140
WP_084947608.1|1332534_1333665_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.9	6.5e-115
WP_173876297.1|1333753_1334644_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000745695.1|1334633_1335095_-	signal peptidase II	NA	NA	NA	NA	NA
WP_173876298.1|1335091_1336000_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	1.1e-06
WP_173876299.1|1336262_1336727_-|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	36.8	2.2e-16
>prophage 7
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	1394095	1401567	2086958		Streptococcus_phage(42.86%)	10	NA	NA
WP_173876329.1|1394095_1395421_-	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	27.8	2.4e-31
WP_001272956.1|1395595_1396207_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_173876330.1|1396251_1396980_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_173876331.1|1397214_1398126_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.5	1.0e-89
WP_173876332.1|1398191_1398416_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590982.1|1398493_1399237_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	4.7e-29
WP_173876333.1|1399236_1400037_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_173876749.1|1400194_1400551_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	56.4	2.2e-32
WP_173876334.1|1400563_1401073_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.3	7.6e-47
WP_173876335.1|1401072_1401567_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.8	1.9e-42
>prophage 8
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	1523998	1533644	2086958		Staphylococcus_phage(50.0%)	8	NA	NA
WP_173876399.1|1523998_1524991_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.6	4.0e-15
WP_173876400.1|1525290_1526985_-	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_173876401.1|1526988_1527999_-	restriction endonuclease subunit S	NA	A0A1W6JNN3	Staphylococcus_phage	30.9	1.9e-36
WP_061589869.1|1527985_1529947_-	N-6 DNA methylase	NA	A0A1W6JNK1	Staphylococcus_phage	50.5	3.1e-173
WP_173876402.1|1530034_1530295_-	hypothetical protein	NA	E4ZFJ0	Streptococcus_phage	58.0	2.4e-20
WP_173876403.1|1530287_1530650_-	hypothetical protein	NA	M1PLN9	Streptococcus_phage	52.5	1.1e-26
WP_001019001.1|1531293_1532175_-	fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_173876404.1|1532315_1533644_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	24.2	3.2e-12
>prophage 9
NZ_CP047883	Streptococcus mitis strain S022-V3-A4 chromosome, complete genome	2086958	2063631	2072390	2086958		Bacillus_phage(33.33%)	9	NA	NA
WP_173876711.1|2063631_2064471_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	32.1	2.0e-15
WP_153219726.1|2064455_2065283_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	34.0	1.0e-16
WP_020900979.1|2065279_2065825_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_173876712.1|2065835_2066663_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_173876713.1|2066704_2067988_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.5	2.6e-19
WP_173876714.1|2067984_2069235_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.5	2.3e-92
WP_173876715.1|2069393_2069762_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	58.7	6.3e-19
WP_173876716.1|2069764_2070862_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_173876717.1|2070911_2072390_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.7	4.4e-95
