assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013285305.1_ASM1328530v1	NZ_CP054205	Pseudomonas rhodesiae strain NL2019 chromosome, complete genome	1	1391178-1391277	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL,PD-DExK	Orphan	ACTGGCCTGACGGATGTACTCGCTTCAACGGTGG	34	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,PD-DExK	NA|135aa|up_8|NZ_CP054205.1_1380892_1381297_-,NA|100aa|down_1|NZ_CP054205.1_1392154_1392454_+,NA|169aa|down_9|NZ_CP054205.1_1402204_1402711_-	NA|248aa|up_9|NZ_CP054205.1_1379996_1380740_-	TIGR00740, tRNA_cmo5U34-methyltransferase, tRNA (cmo5U34)-methyltransferase	NA|135aa|up_8|NZ_CP054205.1_1380892_1381297_-	NA	NA|216aa|up_7|NZ_CP054205.1_1381458_1382106_-	pfam07947, YhhN, YhhN family	NA|130aa|up_6|NZ_CP054205.1_1382107_1382497_-	pfam09394, Inhibitor_I42, Chagasin family peptidase inhibitor I42	NA|807aa|up_5|NZ_CP054205.1_1382686_1385107_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|330aa|up_4|NZ_CP054205.1_1385224_1386214_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|444aa|up_3|NZ_CP054205.1_1386550_1387882_+	PRK06102, PRK06102, amidase	NA|293aa|up_2|NZ_CP054205.1_1387893_1388772_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|447aa|up_1|NZ_CP054205.1_1388795_1390136_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|254aa|up_0|NZ_CP054205.1_1390146_1390908_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|250aa|down_0|NZ_CP054205.1_1391391_1392141_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|100aa|down_1|NZ_CP054205.1_1392154_1392454_+	NA	NA|325aa|down_2|NZ_CP054205.1_1392450_1393425_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|393aa|down_3|NZ_CP054205.1_1393421_1394600_+	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold	NA|779aa|down_4|NZ_CP054205.1_1394810_1397147_+	cd01948, EAL, EAL domain	NA|226aa|down_5|NZ_CP054205.1_1397341_1398019_+	cd04221, MauL, Methylamine utilization protein MauL	NA|784aa|down_6|NZ_CP054205.1_1398002_1400354_+	cd01948, EAL, EAL domain	NA|277aa|down_7|NZ_CP054205.1_1400391_1401222_+	pfam11231, DUF3034, Protein of unknown function (DUF3034)	NA|141aa|down_8|NZ_CP054205.1_1401218_1401641_+	cd00454, TrHb1_N, truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 1 (N)	NA|169aa|down_9|NZ_CP054205.1_1402204_1402711_-	NA
GCF_013285305.1_ASM1328530v1	NZ_CP054205	Pseudomonas rhodesiae strain NL2019 chromosome, complete genome	2	1736910-1737062	2	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL,PD-DExK	Type I-A	AGGTTTGCAGCAGTCCAGCGCCACCCCCAACACCAAGCCCGGCACAGATAAAA	53	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,PD-DExK	NA|105aa|up_7|NZ_CP054205.1_1728433_1728748_+,NA|417aa|up_4|NZ_CP054205.1_1730752_1732003_-,NA	NA|252aa|up_9|NZ_CP054205.1_1726423_1727179_-	COG3176, COG3176, Putative hemolysin [General function prediction only]	NA|358aa|up_8|NZ_CP054205.1_1727363_1728437_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|105aa|up_7|NZ_CP054205.1_1728433_1728748_+	NA	NA|197aa|up_6|NZ_CP054205.1_1728918_1729509_+	smart00867, YceI, YceI-like domain	NA|386aa|up_5|NZ_CP054205.1_1729510_1730668_+	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]	NA|417aa|up_4|NZ_CP054205.1_1730752_1732003_-	NA	NA|764aa|up_3|NZ_CP054205.1_1732225_1734517_-	PRK15098, PRK15098, beta-glucosidase BglX	NA|204aa|up_2|NZ_CP054205.1_1734755_1735367_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|243aa|up_1|NZ_CP054205.1_1735385_1736114_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|206aa|up_0|NZ_CP054205.1_1736145_1736763_+	COG3762, COG3762, Predicted membrane protein [Function unknown]	NA|409aa|down_0|NZ_CP054205.1_1737197_1738424_+	pfam13679, Methyltransf_32, Methyltransferase domain	NA|300aa|down_1|NZ_CP054205.1_1738420_1739320_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|852aa|down_2|NZ_CP054205.1_1739422_1741978_-	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|323aa|down_3|NZ_CP054205.1_1742106_1743075_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|180aa|down_4|NZ_CP054205.1_1743071_1743611_-	PRK12527, PRK12527, RNA polymerase sigma factor; Reviewed	NA|111aa|down_5|NZ_CP054205.1_1743783_1744116_+	COG3422, COG3422, Uncharacterized conserved protein [Function unknown]	NA|293aa|down_6|NZ_CP054205.1_1744169_1745048_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|261aa|down_7|NZ_CP054205.1_1745076_1745859_-	PRK07090, PRK07090, class II aldolase/adducin domain protein; Provisional	NA|176aa|down_8|NZ_CP054205.1_1746019_1746547_+	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|339aa|down_9|NZ_CP054205.1_1746883_1747900_-	pfam16263, DUF4917, Domain of unknown function (DUF4917)
GCF_013285305.1_ASM1328530v1	NZ_CP054205	Pseudomonas rhodesiae strain NL2019 chromosome, complete genome	3	2409754-2409962	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL,PD-DExK	Orphan	AACGGTCAAAGCTGCGGCAA	20	0	0	NA	NA	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL,PD-DExK	NA|141aa|up_8|NZ_CP054205.1_2400665_2401088_+,NA	NA|1205aa|up_9|NZ_CP054205.1_2396915_2400530_+	PRK09959, PRK09959, acid-sensing system histidine kinase EvgS	NA|141aa|up_8|NZ_CP054205.1_2400665_2401088_+	NA	NA|357aa|up_7|NZ_CP054205.1_2401163_2402234_-	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional	NA|250aa|up_6|NZ_CP054205.1_2402853_2403603_+	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes	NA|144aa|up_5|NZ_CP054205.1_2403603_2404035_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|80aa|up_4|NZ_CP054205.1_2404070_2404310_-	TIGR04111, conserved_hypothetical_protein, phage-associated protein, BcepMu gp16 family	NA|122aa|up_3|NZ_CP054205.1_2404392_2404758_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|214aa|up_2|NZ_CP054205.1_2404909_2405551_+	PRK09483, PRK09483, response regulator; Provisional	NA|608aa|up_1|NZ_CP054205.1_2405552_2407376_+	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|187aa|up_0|NZ_CP054205.1_2407408_2407969_+	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|282aa|down_0|NZ_CP054205.1_2411293_2412139_+	cd05233, SDR_c, classical (c) SDRs	NA|207aa|down_1|NZ_CP054205.1_2413351_2413972_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|490aa|down_2|NZ_CP054205.1_2414185_2415655_-	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|370aa|down_3|NZ_CP054205.1_2415957_2417067_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1028aa|down_4|NZ_CP054205.1_2417063_2420147_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|432aa|down_5|NZ_CP054205.1_2420243_2421539_+	PRK06333, PRK06333, beta-ketoacyl-ACP synthase	NA|263aa|down_6|NZ_CP054205.1_2421757_2422546_-	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|192aa|down_7|NZ_CP054205.1_2422682_2423258_+	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional	NA|75aa|down_8|NZ_CP054205.1_2423364_2423589_-	COG3729, GsiB, General stress protein [General function prediction only]	NA|59aa|down_9|NZ_CP054205.1_2423749_2423926_-	COG3729, GsiB, General stress protein [General function prediction only]
GCF_013285305.1_ASM1328530v1	NZ_CP054205	Pseudomonas rhodesiae strain NL2019 chromosome, complete genome	4	3359995-3360105	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL,PD-DExK	Orphan	TGGGTGCCAGGGTGCTTTCCATGCCT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,PD-DExK	NA,NA|118aa|down_1|NZ_CP054205.1_3367242_3367596_+,NA|254aa|down_8|NZ_CP054205.1_3374913_3375675_+,NA|84aa|down_9|NZ_CP054205.1_3375671_3375923_+	NA|870aa|up_9|NZ_CP054205.1_3346685_3349295_+	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|426aa|up_8|NZ_CP054205.1_3349417_3350695_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|318aa|up_7|NZ_CP054205.1_3350956_3351910_+	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase	NA|356aa|up_6|NZ_CP054205.1_3352039_3353107_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|256aa|up_5|NZ_CP054205.1_3353116_3353884_+	PRK07035, PRK07035, SDR family oxidoreductase	NA|478aa|up_4|NZ_CP054205.1_3353954_3355388_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|210aa|up_3|NZ_CP054205.1_3355503_3356133_-	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|442aa|up_2|NZ_CP054205.1_3356351_3357677_+	PRK13027, PRK13027, C4-dicarboxylate transporter DctA; Reviewed	NA|234aa|up_1|NZ_CP054205.1_3357747_3358449_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|229aa|up_0|NZ_CP054205.1_3358466_3359153_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|1623aa|down_0|NZ_CP054205.1_3361896_3366765_-	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|118aa|down_1|NZ_CP054205.1_3367242_3367596_+	NA	NA|320aa|down_2|NZ_CP054205.1_3367872_3368832_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|311aa|down_3|NZ_CP054205.1_3368837_3369770_+	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|165aa|down_4|NZ_CP054205.1_3369766_3370261_+	pfam14316, DUF4381, Domain of unknown function (DUF4381)	NA|363aa|down_5|NZ_CP054205.1_3370253_3371342_+	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|583aa|down_6|NZ_CP054205.1_3371338_3373087_+	sd00006, TPR, Tetratricopeptide repeat	NA|546aa|down_7|NZ_CP054205.1_3373083_3374721_+	pfam13584, BatD, Oxygen tolerance	NA|254aa|down_8|NZ_CP054205.1_3374913_3375675_+	NA	NA|84aa|down_9|NZ_CP054205.1_3375671_3375923_+	NA
GCF_013285305.1_ASM1328530v1	NZ_CP054205	Pseudomonas rhodesiae strain NL2019 chromosome, complete genome	5	3840870-3840975	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL,PD-DExK	Orphan	CACACTGATCCTGTGTCAGACACA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL,PD-DExK	NA|51aa|up_4|NZ_CP054205.1_3833925_3834078_+,NA|137aa|up_3|NZ_CP054205.1_3834074_3834485_-,NA	NA|212aa|up_9|NZ_CP054205.1_3827922_3828558_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|437aa|up_8|NZ_CP054205.1_3828649_3829960_-	PRK01490, tig, trigger factor; Provisional	NA|285aa|up_7|NZ_CP054205.1_3831041_3831896_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|308aa|up_6|NZ_CP054205.1_3832103_3833027_+	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional	NA|221aa|up_5|NZ_CP054205.1_3833075_3833738_-	cd02549, Peptidase_C39A, A sub-family of peptidase family C39	NA|51aa|up_4|NZ_CP054205.1_3833925_3834078_+	NA	NA|137aa|up_3|NZ_CP054205.1_3834074_3834485_-	NA	NA|1074aa|up_2|NZ_CP054205.1_3834678_3837900_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|389aa|up_1|NZ_CP054205.1_3837889_3839056_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|473aa|up_0|NZ_CP054205.1_3839039_3840458_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|153aa|down_0|NZ_CP054205.1_3841268_3841727_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|428aa|down_1|NZ_CP054205.1_3841788_3843072_-	PRK12893, PRK12893, Zn-dependent hydrolase	NA|496aa|down_2|NZ_CP054205.1_3843096_3844584_-	cd11485, SLC-NCS1sbd_YbbW-like, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily, YbbW-like; solute-binding domain	NA|480aa|down_3|NZ_CP054205.1_3845175_3846615_+	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|456aa|down_4|NZ_CP054205.1_3846762_3848130_+	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional	NA|425aa|down_5|NZ_CP054205.1_3848129_3849404_+	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA|207aa|down_6|NZ_CP054205.1_3849524_3850145_-	pfam08362, TetR_C_3, YcdC-like protein, C-terminal region	NA|122aa|down_7|NZ_CP054205.1_3850261_3850627_+	COG2372, CopC, Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]	NA|286aa|down_8|NZ_CP054205.1_3850630_3851488_+	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism]	NA|421aa|down_9|NZ_CP054205.1_3851812_3853075_+	pfam03573, OprD, outer membrane porin, OprD family
