assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013267735.1_ASM1326773v1	NZ_CP054018	Rothia dentocariosa strain FDAARGOS_752 chromosome, complete genome	1	596027-596099	1	CRISPRCasFinder	no	csa3	cas3,csa3,DinG,DEDDh,WYL,c2c9_V-U4	Type I-A	GTTCAGGAAGCAGCACCTGCAGCTC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL,c2c9_V-U4	NA,NA	NA|804aa|up_9|NZ_CP054018.1_582208_584620_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|349aa|up_8|NZ_CP054018.1_584804_585851_-	pfam04471, Mrr_cat, Restriction endonuclease	NA|128aa|up_7|NZ_CP054018.1_586016_586400_-	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit	NA|533aa|up_6|NZ_CP054018.1_586495_588094_-	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]	NA|95aa|up_5|NZ_CP054018.1_588354_588639_-	PRK12863, PRK12863, YciI-like protein; Reviewed	NA|333aa|up_4|NZ_CP054018.1_588785_589784_+	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism]	NA|164aa|up_3|NZ_CP054018.1_589786_590278_+	pfam03703, bPH_2, Bacterial PH domain	NA|390aa|up_2|NZ_CP054018.1_590443_591613_+	cd07302, CHD, cyclase homology domain	NA|307aa|up_1|NZ_CP054018.1_591597_592518_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|741aa|up_0|NZ_CP054018.1_592575_594798_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|99aa|down_0|NZ_CP054018.1_596542_596839_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|532aa|down_1|NZ_CP054018.1_596848_598444_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|502aa|down_2|NZ_CP054018.1_598443_599949_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|558aa|down_3|NZ_CP054018.1_600154_601828_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|734aa|down_4|NZ_CP054018.1_602068_604270_-	COG1770, PtrB, Protease II [Amino acid transport and metabolism]	NA|138aa|down_5|NZ_CP054018.1_604415_604829_-	cd08359, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|197aa|down_6|NZ_CP054018.1_604939_605530_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|132aa|down_7|NZ_CP054018.1_605678_606074_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|107aa|down_8|NZ_CP054018.1_606104_606425_-	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|164aa|down_9|NZ_CP054018.1_606458_606950_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
GCF_013267735.1_ASM1326773v1	NZ_CP054018	Rothia dentocariosa strain FDAARGOS_752 chromosome, complete genome	2	1624601-1624684	2	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,WYL,c2c9_V-U4	Orphan	CAGGTGTATCGGGAGTGTCAGGTG	24	1	1	1624625-1624660	NZ_CP054018.1_1624685-1624720	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,WYL,c2c9_V-U4	NA|53aa|up_9|NZ_CP054018.1_1611004_1611163_-,NA|140aa|up_4|NZ_CP054018.1_1617275_1617695_+,NA	NA|53aa|up_9|NZ_CP054018.1_1611004_1611163_-	NA	NA|313aa|up_8|NZ_CP054018.1_1611149_1612088_-	cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP	NA|724aa|up_7|NZ_CP054018.1_1612203_1614375_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|557aa|up_6|NZ_CP054018.1_1614784_1616455_+	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|225aa|up_5|NZ_CP054018.1_1616564_1617239_-	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins	NA|140aa|up_4|NZ_CP054018.1_1617275_1617695_+	NA	NA|182aa|up_3|NZ_CP054018.1_1617790_1618336_-	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|159aa|up_2|NZ_CP054018.1_1618496_1618973_-	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|126aa|up_1|NZ_CP054018.1_1619015_1619393_-	COG3189, COG3189, Uncharacterized conserved protein [Function unknown]	NA|500aa|up_0|NZ_CP054018.1_1620146_1621646_-	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]	NA|219aa|down_0|NZ_CP054018.1_1626165_1626822_+	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|155aa|down_1|NZ_CP054018.1_1626936_1627401_-	pfam02566, OsmC, OsmC-like protein	NA|292aa|down_2|NZ_CP054018.1_1627572_1628448_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|113aa|down_3|NZ_CP054018.1_1628440_1628779_+	COG1687, AzlD, Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]	NA|318aa|down_4|NZ_CP054018.1_1628788_1629742_+	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]	NA|167aa|down_5|NZ_CP054018.1_1629820_1630321_-	PRK00522, tpx, thiol peroxidase	NA|113aa|down_6|NZ_CP054018.1_1630889_1631228_+	pfam14041, Lipoprotein_21, LppP/LprE lipoprotein	NA|218aa|down_7|NZ_CP054018.1_1631264_1631918_+	pfam14041, Lipoprotein_21, LppP/LprE lipoprotein	NA|139aa|down_8|NZ_CP054018.1_1632379_1632796_+	COG4270, COG4270, Predicted membrane protein [Function unknown]	NA|227aa|down_9|NZ_CP054018.1_1632875_1633556_+	pfam08241, Methyltransf_11, Methyltransferase domain
GCF_013267735.1_ASM1326773v1	NZ_CP054018	Rothia dentocariosa strain FDAARGOS_752 chromosome, complete genome	3	2263176-2263387	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4	cas3,csa3,DinG,DEDDh,WYL,c2c9_V-U4	Type V-U4	GGAACCACCCATGCACACGCGGGGCAGAC,GGAACCACCCATGCACACGCGGGGCAGAC,GGAACCACCCATGCACACGCGGGGCAGAC	29,29,29	0	0	NA	NA	NA:NA:NA	3,3,3	3	TypeV-U4	cas3,csa3,DinG,DEDDh,WYL,c2c9_V-U4	NA|68aa|up_0|NZ_CP054018.1_2262960_2263164_+,NA|79aa|down_5|NZ_CP054018.1_2269884_2270121_-,NA|50aa|down_9|NZ_CP054018.1_2273522_2273672_-	NA|319aa|up_9|NZ_CP054018.1_2255641_2256598_-	COG5495, COG5495, Uncharacterized conserved protein [Function unknown]	NA|575aa|up_8|NZ_CP054018.1_2256688_2258413_-	COG3428, COG3428, Predicted membrane protein [Function unknown]	NA|192aa|up_7|NZ_CP054018.1_2258412_2258988_-	COG3402, COG3402, Uncharacterized conserved protein [Function unknown]	NA|178aa|up_6|NZ_CP054018.1_2258997_2259531_-	pfam11377, DUF3180, Protein of unknown function (DUF3180)	NA|201aa|up_5|NZ_CP054018.1_2259527_2260130_-	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|145aa|up_4|NZ_CP054018.1_2260167_2260602_-	pfam02152, FolB, Dihydroneopterin aldolase	NA|317aa|up_3|NZ_CP054018.1_2260639_2261590_-	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes	NA|68aa|up_2|NZ_CP054018.1_2261853_2262057_+	pfam07787, TMEM43, Transmembrane protein 43	NA|198aa|up_1|NZ_CP054018.1_2262095_2262689_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|68aa|up_0|NZ_CP054018.1_2262960_2263164_+	NA	c2c9_V-U4|541aa|down_0|NZ_CP054018.1_2263475_2265098_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|68aa|down_1|NZ_CP054018.1_2265391_2265595_-	cd11586, VbhA_like, VbhA antitoxin and related proteins	NA|196aa|down_2|NZ_CP054018.1_2265743_2266331_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|757aa|down_3|NZ_CP054018.1_2266317_2268588_-	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH	NA|184aa|down_4|NZ_CP054018.1_2269154_2269706_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|79aa|down_5|NZ_CP054018.1_2269884_2270121_-	NA	NA|399aa|down_6|NZ_CP054018.1_2270262_2271459_-	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|376aa|down_7|NZ_CP054018.1_2271820_2272948_-	TIGR03883, DUF2342_F420, uncharacterized protein, coenzyme F420 biosynthesis associated	NA|76aa|down_8|NZ_CP054018.1_2273031_2273259_-	TIGR03070, couple_hipB, transcriptional regulator, y4mF family	NA|50aa|down_9|NZ_CP054018.1_2273522_2273672_-	NA
