assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013267675.1_ASM1326767v1	NZ_CP053957	Staphylococcus capitis strain FDAARGOS_753 chromosome, complete genome	1	1625074-1625162	1	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CAACTTGCATTGTTTGTAGAATTTCATTTTAA	32	1	7	1625106-1625130|1625106-1625130|1625106-1625130|1625106-1625130|1625106-1625130|1625106-1625130|1625106-1625130	NZ_CP053957.1_20216-20192|NZ_CP053957.1_1542802-1542826|NZ_CP053957.1_1710321-1710345|NZ_CP053957.1_1767909-1767885|NZ_CP053957.1_1797117-1797093|NZ_CP053957.1_1927025-1927049|NZ_CP053957.1_2046017-2045993	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|241aa|up_9|NZ_CP053957.1_1613493_1614216_-	PRK00358, pyrH, uridylate kinase; Provisional	NA|293aa|up_8|NZ_CP053957.1_1614352_1615231_-	PRK09377, tsf, elongation factor Ts; Provisional	NA|263aa|up_7|NZ_CP053957.1_1615381_1616170_-	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|258aa|up_6|NZ_CP053957.1_1616425_1617199_-	PRK04158, PRK04158, GTP-sensing pleiotropic transcriptional regulator CodY	NA|468aa|up_5|NZ_CP053957.1_1617221_1618625_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|181aa|up_4|NZ_CP053957.1_1618709_1619252_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|297aa|up_3|NZ_CP053957.1_1619255_1620146_-	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC	NA|436aa|up_2|NZ_CP053957.1_1620382_1621690_-	PRK05335, PRK05335, tRNA (uracil-5-)-methyltransferase Gid; Reviewed	NA|692aa|up_1|NZ_CP053957.1_1621715_1623791_-	PRK05582, PRK05582, type I DNA topoisomerase	NA|291aa|up_0|NZ_CP053957.1_1623968_1624841_-	pfam02481, DNA_processg_A, DNA recombination-mediator protein A	NA|303aa|down_0|NZ_CP053957.1_1625329_1626238_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|down_1|NZ_CP053957.1_1626259_1627426_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|257aa|down_2|NZ_CP053957.1_1627533_1628304_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|289aa|down_3|NZ_CP053957.1_1628305_1629172_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|867aa|down_4|NZ_CP053957.1_1629451_1632052_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|874aa|down_5|NZ_CP053957.1_1632044_1634666_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|down_6|NZ_CP053957.1_1636336_1636687_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|down_7|NZ_CP053957.1_1636792_1637530_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|down_8|NZ_CP053957.1_1637529_1638033_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|down_9|NZ_CP053957.1_1638319_1638595_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed
GCF_013267675.1_ASM1326767v1	NZ_CP053957	Staphylococcus capitis strain FDAARGOS_753 chromosome, complete genome	2	1638699-1638791	2	CRISPRCasFinder	no	cas3	WYL,csa3,DEDDh,cas3,DinG	Unclear	TTTATGAAATAAATCGTACTTTTGGTTATG	30	0	0	NA	NA	NA	1	1	Unclear	WYL,csa3,DEDDh,cas3,DinG	NA,NA	NA|303aa|up_9|NZ_CP053957.1_1625329_1626238_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_8|NZ_CP053957.1_1626259_1627426_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|257aa|up_7|NZ_CP053957.1_1627533_1628304_-	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like	NA|289aa|up_6|NZ_CP053957.1_1628305_1629172_-	PRK09563, rbgA, GTPase YlqF; Reviewed	NA|867aa|up_5|NZ_CP053957.1_1629451_1632052_+	pfam09586, YfhO, Bacterial membrane protein YfhO	NA|874aa|up_4|NZ_CP053957.1_1632044_1634666_+	COG4485, COG4485, Predicted membrane protein [Function unknown]	NA|117aa|up_3|NZ_CP053957.1_1636336_1636687_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_2|NZ_CP053957.1_1636792_1637530_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_1|NZ_CP053957.1_1637529_1638033_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_0|NZ_CP053957.1_1638319_1638595_-	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed	NA|456aa|down_0|NZ_CP053957.1_1639020_1640388_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|down_1|NZ_CP053957.1_1640418_1640751_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|420aa|down_2|NZ_CP053957.1_1640737_1641997_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1190aa|down_3|NZ_CP053957.1_1641993_1645563_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|246aa|down_4|NZ_CP053957.1_1645686_1646424_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|down_5|NZ_CP053957.1_1646540_1646774_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_6|NZ_CP053957.1_1647506_1648241_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_7|NZ_CP053957.1_1648233_1649160_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_8|NZ_CP053957.1_1649152_1650139_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|190aa|down_9|NZ_CP053957.1_1650131_1650701_-	PRK04424, PRK04424, transcription factor FapR
GCF_013267675.1_ASM1326767v1	NZ_CP053957	Staphylococcus capitis strain FDAARGOS_753 chromosome, complete genome	3	2094383-2094490	3	CRISPRCasFinder	no		WYL,csa3,DEDDh,cas3,DinG	Orphan	CGATTGCACTAAGAACTACTCACCTTCACTTTGTGAAGGA	40	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|95aa|up_8|NZ_CP053957.1_2085817_2086102_-,NA|229aa|up_2|NZ_CP053957.1_2092470_2093157_+,NA|99aa|down_0|NZ_CP053957.1_2095151_2095448_-,NA|230aa|down_3|NZ_CP053957.1_2096681_2097371_+	NA|314aa|up_9|NZ_CP053957.1_2084730_2085672_-	PRK06223, PRK06223, malate dehydrogenase; Reviewed	NA|95aa|up_8|NZ_CP053957.1_2085817_2086102_-	NA	NA|309aa|up_7|NZ_CP053957.1_2086119_2087046_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|147aa|up_6|NZ_CP053957.1_2087270_2087711_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|562aa|up_5|NZ_CP053957.1_2087837_2089523_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|543aa|up_4|NZ_CP053957.1_2089525_2091154_-	COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]	NA|291aa|up_3|NZ_CP053957.1_2091380_2092253_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|229aa|up_2|NZ_CP053957.1_2092470_2093157_+	NA	NA|149aa|up_1|NZ_CP053957.1_2093163_2093610_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_0|NZ_CP053957.1_2093623_2094190_+	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|99aa|down_0|NZ_CP053957.1_2095151_2095448_-	NA	NA|115aa|down_1|NZ_CP053957.1_2095681_2096026_-	pfam15294, Leu_zip, Leucine zipper	NA|152aa|down_2|NZ_CP053957.1_2096083_2096539_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|down_3|NZ_CP053957.1_2096681_2097371_+	NA	NA|163aa|down_4|NZ_CP053957.1_2097439_2097928_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|down_5|NZ_CP053957.1_2097934_2099143_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|285aa|down_6|NZ_CP053957.1_2099215_2100070_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|202aa|down_7|NZ_CP053957.1_2100163_2100769_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|157aa|down_8|NZ_CP053957.1_2101170_2101641_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|239aa|down_9|NZ_CP053957.1_2101640_2102357_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator
GCF_013267675.1_ASM1326767v1	NZ_CP053958	Staphylococcus capitis strain FDAARGOS_753 plasmid unnamed1	1	429-541	1	CRISPRCasFinder	no			Orphan	ATATAAGTGACTTAATTTACAAAATGTCCCT	31	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA,NA|136aa|down_1|NZ_CP053958.1_2720_3128_+,NA|31aa|down_4|NZ_CP053958.1_6293_6386_+,NA|219aa|down_7|NZ_CP053958.1_8237_8894_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|136aa|up_0|NZ_CP053958.1_0_409_-	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|403aa|down_0|NZ_CP053958.1_1057_2266_-	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|136aa|down_1|NZ_CP053958.1_2720_3128_+	NA	NA|243aa|down_2|NZ_CP053958.1_3379_4108_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|286aa|down_3|NZ_CP053958.1_4111_4969_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|31aa|down_4|NZ_CP053958.1_6293_6386_+	NA	NA|225aa|down_5|NZ_CP053958.1_6626_7301_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|176aa|down_6|NZ_CP053958.1_7517_8045_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|219aa|down_7|NZ_CP053958.1_8237_8894_-	NA	NA|70aa|down_8|NZ_CP053958.1_8957_9167_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|796aa|down_9|NZ_CP053958.1_9200_11588_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B
GCF_013267675.1_ASM1326767v1	NZ_CP053958	Staphylococcus capitis strain FDAARGOS_753 plasmid unnamed1	2	14548-14660	2	CRISPRCasFinder	no			Orphan	ATATAAGTGACTTAATTTACAAAATGTCCCT	31	0	0	NA	NA	NA	1	1	Orphan	WYL,csa3,DEDDh,cas3,DinG	NA|31aa|up_9|NZ_CP053958.1_6293_6386_+,NA|219aa|up_6|NZ_CP053958.1_8237_8894_-,NA|136aa|down_1|NZ_CP053958.1_16843_17251_+	NA|31aa|up_9|NZ_CP053958.1_6293_6386_+	NA	NA|225aa|up_8|NZ_CP053958.1_6626_7301_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|176aa|up_7|NZ_CP053958.1_7517_8045_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|219aa|up_6|NZ_CP053958.1_8237_8894_-	NA	NA|70aa|up_5|NZ_CP053958.1_8957_9167_-	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]	NA|796aa|up_4|NZ_CP053958.1_9200_11588_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|92aa|up_3|NZ_CP053958.1_11602_11878_-	cd10157, BsCsoR-like_DUF156, Bacillus subtilis copper-sensitive operon repressor (BsCsoR), and related domains; this family was previously known as part of DUF156	NA|97aa|up_2|NZ_CP053958.1_12022_12313_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|225aa|up_1|NZ_CP053958.1_12854_13529_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|287aa|up_0|NZ_CP053958.1_13667_14528_-	COG5527, COG5527, Protein involved in initiation of plasmid replication [DNA replication, recombination, and repair]	NA|403aa|down_0|NZ_CP053958.1_15180_16389_-	pfam01076, Mob_Pre, Plasmid recombination enzyme	NA|136aa|down_1|NZ_CP053958.1_16843_17251_+	NA	NA|243aa|down_2|NZ_CP053958.1_17502_18231_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|286aa|down_3|NZ_CP053958.1_18234_19092_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
