assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	1	114724-115871	1,1,1	CRT,PILER-CR,CRISPRCasFinder	no	cas6,cas10,csm2gr11,csm3gr7,c2c9_V-U4	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type III-D,Type III-B,Type III-A,Type III-C	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC,GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	15,14,14	15	TypeIII-D,TypeIII-B,TypeIII-A,TypeIII-C	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|203aa|down_2|NZ_CP054014.1_118308_118917_-,NA|104aa|down_3|NZ_CP054014.1_119336_119648_-,NA|86aa|down_4|NZ_CP054014.1_119752_120010_-,NA|64aa|down_6|NZ_CP054014.1_121596_121788_-,NA|135aa|down_7|NZ_CP054014.1_121784_122189_-,NA|85aa|down_8|NZ_CP054014.1_122336_122591_+	NA|90aa|up_9|NZ_CP054014.1_104711_104981_+	COG5552, COG5552, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_8|NZ_CP054014.1_104977_105523_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	NA|296aa|up_7|NZ_CP054014.1_105827_106715_+	pfam09407, AbiEi_1, AbiEi antitoxin C-terminal domain	NA|295aa|up_6|NZ_CP054014.1_106717_107602_+	COG2253, COG2253, Uncharacterized conserved protein [Function unknown]	NA|182aa|up_5|NZ_CP054014.1_107873_108419_+	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]	cas6|241aa|up_4|NZ_CP054014.1_108818_109541_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas10|813aa|up_3|NZ_CP054014.1_109537_111976_+	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	csm2gr11|125aa|up_2|NZ_CP054014.1_111972_112347_+	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	csm3gr7|237aa|up_1|NZ_CP054014.1_112356_113067_+	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	NA|421aa|up_0|NZ_CP054014.1_113430_114692_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|271aa|down_0|NZ_CP054014.1_116019_116832_-	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|470aa|down_1|NZ_CP054014.1_116828_118238_-	pfam00665, rve, Integrase core domain	NA|203aa|down_2|NZ_CP054014.1_118308_118917_-	NA	NA|104aa|down_3|NZ_CP054014.1_119336_119648_-	NA	NA|86aa|down_4|NZ_CP054014.1_119752_120010_-	NA	NA|385aa|down_5|NZ_CP054014.1_120243_121398_-	pfam00665, rve, Integrase core domain	NA|64aa|down_6|NZ_CP054014.1_121596_121788_-	NA	NA|135aa|down_7|NZ_CP054014.1_121784_122189_-	NA	NA|85aa|down_8|NZ_CP054014.1_122336_122591_+	NA	NA|92aa|down_9|NZ_CP054014.1_122766_123042_-	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	2	1073979-1074120	2	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	TGAGTATTCCGTCGGTGACGGTTCCGCCGATCACGATTCCGGCTGGCAC	49	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|127aa|up_5|NZ_CP054014.1_1066081_1066462_+,NA|107aa|down_1|NZ_CP054014.1_1078647_1078968_-,NA|136aa|down_4|NZ_CP054014.1_1086327_1086735_+	NA|256aa|up_9|NZ_CP054014.1_1061794_1062562_+	PRK05867, PRK05867, SDR family oxidoreductase	NA|258aa|up_8|NZ_CP054014.1_1062565_1063339_-	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|160aa|up_7|NZ_CP054014.1_1063575_1064055_+	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|621aa|up_6|NZ_CP054014.1_1064062_1065925_-	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|127aa|up_5|NZ_CP054014.1_1066081_1066462_+	NA	NA|447aa|up_4|NZ_CP054014.1_1066498_1067839_-	pfam00144, Beta-lactamase, Beta-lactamase	NA|372aa|up_3|NZ_CP054014.1_1067829_1068945_-	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|424aa|up_2|NZ_CP054014.1_1069216_1070488_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|288aa|up_1|NZ_CP054014.1_1070525_1071389_-	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|155aa|up_0|NZ_CP054014.1_1071486_1071951_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|421aa|down_0|NZ_CP054014.1_1077359_1078621_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|107aa|down_1|NZ_CP054014.1_1078647_1078968_-	NA	NA|421aa|down_2|NZ_CP054014.1_1081494_1082756_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|767aa|down_3|NZ_CP054014.1_1083892_1086193_-	PLN02892, PLN02892, isocitrate lyase	NA|136aa|down_4|NZ_CP054014.1_1086327_1086735_+	NA	NA|251aa|down_5|NZ_CP054014.1_1086712_1087465_-	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|335aa|down_6|NZ_CP054014.1_1087564_1088569_+	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|202aa|down_7|NZ_CP054014.1_1088668_1089274_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|198aa|down_8|NZ_CP054014.1_1089356_1089950_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|148aa|down_9|NZ_CP054014.1_1090063_1090507_+	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	3	1185755-1186750	2,2	CRT,PILER-CR	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GNCGGCGGGGCCGGCGGC,CGGCGGTGCCGGCGGGGCCGGCGGCAACGGCGGG	18,34	2	6	1185896-1185916|1185896-1185916|1185896-1185916|1185896-1185916|1185995-1186015|1185995-1186015	NZ_CP054014.1_874721-874741|NZ_CP054014.1_1742235-1742255|NZ_CP054014.1_1742394-1742414|NZ_CP054014.1_2070495-2070515|NZ_CP054014.1_2141011-2140991|NZ_CP054014.1_3839100-3839080	NA:NA	16,2	16	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|222aa|down_2|NZ_CP054014.1_1189824_1190490_-	NA|248aa|up_9|NZ_CP054014.1_1174184_1174928_-	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|163aa|up_8|NZ_CP054014.1_1174924_1175413_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|135aa|up_7|NZ_CP054014.1_1175652_1176057_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_6|NZ_CP054014.1_1176094_1176973_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|122aa|up_5|NZ_CP054014.1_1176989_1177355_-	COG3856, Sbp, Uncharacterized conserved protein (small basic protein) [Function unknown]	NA|308aa|up_4|NZ_CP054014.1_1177383_1178307_-	COG3879, COG3879, Uncharacterized protein conserved in bacteria [Function unknown]	NA|210aa|up_3|NZ_CP054014.1_1178299_1178929_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|809aa|up_2|NZ_CP054014.1_1179125_1181552_-	PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	NA|548aa|up_1|NZ_CP054014.1_1181566_1183210_-	PRK05858, PRK05858, acetolactate synthase	NA|640aa|up_0|NZ_CP054014.1_1183280_1185200_+	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]	NA|488aa|down_0|NZ_CP054014.1_1186959_1188423_-	PRK07121, PRK07121, FAD-binding protein	NA|235aa|down_1|NZ_CP054014.1_1189057_1189762_-	pfam13305, WHG, WHG domain	NA|222aa|down_2|NZ_CP054014.1_1189824_1190490_-	NA	NA|301aa|down_3|NZ_CP054014.1_1190594_1191497_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|144aa|down_4|NZ_CP054014.1_1191905_1192337_+	pfam13827, DUF4189, Domain of unknown function (DUF4189)	NA|401aa|down_5|NZ_CP054014.1_1192658_1193861_+	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|235aa|down_6|NZ_CP054014.1_1193870_1194575_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|119aa|down_7|NZ_CP054014.1_1194728_1195085_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|469aa|down_8|NZ_CP054014.1_1195329_1196736_-	pfam00823, PPE, PPE family	NA|410aa|down_9|NZ_CP054014.1_1196867_1198097_-	pfam00823, PPE, PPE family
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	4	1597359-1597813	3	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GGGGCCGGCGGGNNCGGNGG	20	5	5	1597445-1597478|1597499-1597544|1597565-1597628|1597649-1597703|1597724-1597793	NZ_CP054014.1_1593672-1593705|NZ_CP054014.1_1593726-1593771|NZ_CP054014.1_1593792-1593855|NZ_CP054014.1_1593876-1593930|NZ_CP054014.1_1593951-1594020	NA	6	6	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|288aa|up_4|NZ_CP054014.1_1589863_1590727_-,NA|137aa|down_5|NZ_CP054014.1_1608099_1608510_+,NA|38aa|down_6|NZ_CP054014.1_1608559_1608673_+	NA|269aa|up_9|NZ_CP054014.1_1584361_1585168_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|592aa|up_8|NZ_CP054014.1_1585215_1586991_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|314aa|up_7|NZ_CP054014.1_1587146_1588088_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|up_6|NZ_CP054014.1_1588084_1588870_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|311aa|up_5|NZ_CP054014.1_1588981_1589914_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|288aa|up_4|NZ_CP054014.1_1589863_1590727_-	NA	NA|329aa|up_3|NZ_CP054014.1_1590746_1591733_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|422aa|up_2|NZ_CP054014.1_1591760_1593026_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|802aa|up_1|NZ_CP054014.1_1593177_1595583_+	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP054014.1_1595631_1596558_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|701aa|down_0|NZ_CP054014.1_1601594_1603697_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|down_1|NZ_CP054014.1_1603713_1604835_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|down_2|NZ_CP054014.1_1604831_1606376_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|305aa|down_3|NZ_CP054014.1_1606428_1607343_+	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|248aa|down_4|NZ_CP054014.1_1607339_1608083_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|137aa|down_5|NZ_CP054014.1_1608099_1608510_+	NA	NA|38aa|down_6|NZ_CP054014.1_1608559_1608673_+	NA	NA|155aa|down_7|NZ_CP054014.1_1609125_1609590_+	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|767aa|down_8|NZ_CP054014.1_1609705_1612006_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|486aa|down_9|NZ_CP054014.1_1612112_1613570_+	pfam00934, PE, PE family
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	5	1598073-1598912	4	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GNCGGCGGNANCGGCGGC	18	1	1	1598091-1598117	NZ_CP054014.1_1594324-1594350	NA	14	14	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|288aa|up_4|NZ_CP054014.1_1589863_1590727_-,NA|137aa|down_5|NZ_CP054014.1_1608099_1608510_+,NA|38aa|down_6|NZ_CP054014.1_1608559_1608673_+	NA|269aa|up_9|NZ_CP054014.1_1584361_1585168_-	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|592aa|up_8|NZ_CP054014.1_1585215_1586991_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|314aa|up_7|NZ_CP054014.1_1587146_1588088_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|up_6|NZ_CP054014.1_1588084_1588870_+	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|311aa|up_5|NZ_CP054014.1_1588981_1589914_+	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|288aa|up_4|NZ_CP054014.1_1589863_1590727_-	NA	NA|329aa|up_3|NZ_CP054014.1_1590746_1591733_+	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|422aa|up_2|NZ_CP054014.1_1591760_1593026_-	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|802aa|up_1|NZ_CP054014.1_1593177_1595583_+	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP054014.1_1595631_1596558_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|701aa|down_0|NZ_CP054014.1_1601594_1603697_+	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|374aa|down_1|NZ_CP054014.1_1603713_1604835_+	PRK03343, PRK03343, transaldolase; Validated	NA|515aa|down_2|NZ_CP054014.1_1604831_1606376_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|305aa|down_3|NZ_CP054014.1_1606428_1607343_+	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|248aa|down_4|NZ_CP054014.1_1607339_1608083_+	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|137aa|down_5|NZ_CP054014.1_1608099_1608510_+	NA	NA|38aa|down_6|NZ_CP054014.1_1608559_1608673_+	NA	NA|155aa|down_7|NZ_CP054014.1_1609125_1609590_+	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|767aa|down_8|NZ_CP054014.1_1609705_1612006_-	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases	NA|486aa|down_9|NZ_CP054014.1_1612112_1613570_+	pfam00934, PE, PE family
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	6	2304982-2305210	3	PILER-CR	no	csa3	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Type I-A	CTGTTCGGCGCCGGCGGGGCCGGCGGGGCCGGCGGGTCCG	40	0	0	NA	NA	NA	2	2	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|184aa|up_2|NZ_CP054014.1_2299890_2300442_+,NA	NA|335aa|up_9|NZ_CP054014.1_2291627_2292632_-	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]	NA|431aa|up_8|NZ_CP054014.1_2292615_2293908_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|287aa|up_7|NZ_CP054014.1_2294702_2295563_+	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|271aa|up_6|NZ_CP054014.1_2295630_2296443_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|257aa|up_5|NZ_CP054014.1_2296529_2297300_-	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|343aa|up_4|NZ_CP054014.1_2297988_2299017_+	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|241aa|up_3|NZ_CP054014.1_2299087_2299810_+	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|184aa|up_2|NZ_CP054014.1_2299890_2300442_+	NA	NA|215aa|up_1|NZ_CP054014.1_2300422_2301067_-	pfam14032, PknH_C, PknH-like extracellular domain	NA|883aa|up_0|NZ_CP054014.1_2301534_2304183_+	pfam00934, PE, PE family	NA|272aa|down_0|NZ_CP054014.1_2308019_2308835_+	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|302aa|down_1|NZ_CP054014.1_2308853_2309759_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|97aa|down_2|NZ_CP054014.1_2309863_2310154_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|141aa|down_3|NZ_CP054014.1_2310115_2310538_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	csa3|131aa|down_4|NZ_CP054014.1_2310595_2310988_+	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|352aa|down_5|NZ_CP054014.1_2311039_2312095_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|214aa|down_6|NZ_CP054014.1_2312175_2312817_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|339aa|down_7|NZ_CP054014.1_2312978_2313995_+	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|389aa|down_8|NZ_CP054014.1_2314082_2315249_+	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|685aa|down_9|NZ_CP054014.1_2315414_2317469_+	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	7	2391074-2391189	4	PILER-CR	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGGCGGGGACGGCGGGGCCGGCGGC	26	1	3	2391145-2391163|2391145-2391163|2391145-2391163	NZ_CP054014.1_3861171-3861153|NZ_CP054014.1_516740-516758|NZ_CP054014.1_4271622-4271640	NA	2	2	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|242aa|up_9|NZ_CP054014.1_2380259_2380985_+,NA|82aa|up_3|NZ_CP054014.1_2389447_2389693_-,NA|46aa|up_2|NZ_CP054014.1_2389851_2389989_+,NA|186aa|down_3|NZ_CP054014.1_2397153_2397711_+,NA|176aa|down_5|NZ_CP054014.1_2399293_2399821_-,NA|71aa|down_8|NZ_CP054014.1_2401685_2401898_-	NA|242aa|up_9|NZ_CP054014.1_2380259_2380985_+	NA	NA|646aa|up_8|NZ_CP054014.1_2381685_2383623_+	pfam00823, PPE, PPE family	NA|585aa|up_7|NZ_CP054014.1_2383812_2385567_-	pfam00934, PE, PE family	NA|511aa|up_6|NZ_CP054014.1_2385772_2387305_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|391aa|up_5|NZ_CP054014.1_2387311_2388484_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|295aa|up_4|NZ_CP054014.1_2388494_2389379_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|82aa|up_3|NZ_CP054014.1_2389447_2389693_-	NA	NA|46aa|up_2|NZ_CP054014.1_2389851_2389989_+	NA	NA|143aa|up_1|NZ_CP054014.1_2390069_2390498_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_0|NZ_CP054014.1_2390521_2390779_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|785aa|down_0|NZ_CP054014.1_2393541_2395896_-	pfam00934, PE, PE family	NA|49aa|down_1|NZ_CP054014.1_2396391_2396538_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|169aa|down_2|NZ_CP054014.1_2396650_2397157_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|186aa|down_3|NZ_CP054014.1_2397153_2397711_+	NA	NA|176aa|down_4|NZ_CP054014.1_2398088_2398616_-	pfam00934, PE, PE family	NA|176aa|down_5|NZ_CP054014.1_2399293_2399821_-	NA	NA|283aa|down_6|NZ_CP054014.1_2399935_2400784_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|183aa|down_7|NZ_CP054014.1_2400988_2401537_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|71aa|down_8|NZ_CP054014.1_2401685_2401898_-	NA	NA|166aa|down_9|NZ_CP054014.1_2401894_2402392_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	8	2394386-2394543	5	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGGCCCCGCCGGCCCCGCC	23	0	0	NA	NA	NA	3	3	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|82aa|up_4|NZ_CP054014.1_2389447_2389693_-,NA|46aa|up_3|NZ_CP054014.1_2389851_2389989_+,NA|186aa|down_2|NZ_CP054014.1_2397153_2397711_+,NA|176aa|down_4|NZ_CP054014.1_2399293_2399821_-,NA|71aa|down_7|NZ_CP054014.1_2401685_2401898_-	NA|646aa|up_9|NZ_CP054014.1_2381685_2383623_+	pfam00823, PPE, PPE family	NA|585aa|up_8|NZ_CP054014.1_2383812_2385567_-	pfam00934, PE, PE family	NA|511aa|up_7|NZ_CP054014.1_2385772_2387305_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|391aa|up_6|NZ_CP054014.1_2387311_2388484_+	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|295aa|up_5|NZ_CP054014.1_2388494_2389379_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|82aa|up_4|NZ_CP054014.1_2389447_2389693_-	NA	NA|46aa|up_3|NZ_CP054014.1_2389851_2389989_+	NA	NA|143aa|up_2|NZ_CP054014.1_2390069_2390498_-	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|86aa|up_1|NZ_CP054014.1_2390521_2390779_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|758aa|up_0|NZ_CP054014.1_2390869_2393143_-	pfam00934, PE, PE family	NA|49aa|down_0|NZ_CP054014.1_2396391_2396538_+	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|169aa|down_1|NZ_CP054014.1_2396650_2397157_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|186aa|down_2|NZ_CP054014.1_2397153_2397711_+	NA	NA|176aa|down_3|NZ_CP054014.1_2398088_2398616_-	pfam00934, PE, PE family	NA|176aa|down_4|NZ_CP054014.1_2399293_2399821_-	NA	NA|283aa|down_5|NZ_CP054014.1_2399935_2400784_-	pfam10774, DUF4226, Domain of unknown function (DUF4226)	NA|183aa|down_6|NZ_CP054014.1_2400988_2401537_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|71aa|down_7|NZ_CP054014.1_2401685_2401898_-	NA	NA|166aa|down_8|NZ_CP054014.1_2401894_2402392_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|71aa|down_9|NZ_CP054014.1_2402439_2402652_-	PRK06965, PRK06965, acetolactate synthase 3 catalytic subunit; Validated
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	9	2540159-2540235	3	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	ACCCGCGCTCACGCCGCACCTCA	23	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA	NA|104aa|up_9|NZ_CP054014.1_2532092_2532404_-	pfam03413, PepSY, Peptidase propeptide and YPEB domain	NA|254aa|up_8|NZ_CP054014.1_2532460_2533222_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|157aa|up_7|NZ_CP054014.1_2533265_2533736_+	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|169aa|up_6|NZ_CP054014.1_2533849_2534356_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|79aa|up_5|NZ_CP054014.1_2534459_2534696_+	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|138aa|up_4|NZ_CP054014.1_2534692_2535106_+	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|412aa|up_3|NZ_CP054014.1_2535356_2536592_+	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|86aa|up_2|NZ_CP054014.1_2536774_2537032_+	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|131aa|up_1|NZ_CP054014.1_2537028_2537421_+	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|517aa|up_0|NZ_CP054014.1_2537472_2539023_-	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|482aa|down_0|NZ_CP054014.1_2541755_2543201_-	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|405aa|down_1|NZ_CP054014.1_2544226_2545441_-	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|296aa|down_2|NZ_CP054014.1_2545446_2546334_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|266aa|down_3|NZ_CP054014.1_2546335_2547133_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|241aa|down_4|NZ_CP054014.1_2547129_2547852_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|796aa|down_5|NZ_CP054014.1_2547989_2550377_+	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|878aa|down_6|NZ_CP054014.1_2550399_2553033_-	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|229aa|down_7|NZ_CP054014.1_2553186_2553873_+	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|136aa|down_8|NZ_CP054014.1_2553932_2554340_-	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|72aa|down_9|NZ_CP054014.1_2554336_2554552_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	10	2806699-2806846	5	PILER-CR	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CACCGGCAACATCGGCTTCGGCAACACCGGAAACGGAAACAT	42	1	9	2806814-2806831|2806814-2806831|2806814-2806831|2806814-2806831|2806814-2806831|2806814-2806831|2806814-2806831|2806814-2806831|2806814-2806831	NZ_CP054014.1_1076594-1076611|NZ_CP054014.1_2798455-2798472|NZ_CP054014.1_2801140-2801157|NZ_CP054014.1_2805541-2805558|NZ_CP054014.1_2806999-2807016|NZ_CP054014.1_2862695-2862712|NZ_CP054014.1_3876733-3876750|NZ_CP054014.1_3882177-3882194|NZ_CP054014.1_3894109-3894126	NA	2	2	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|276aa|up_5|NZ_CP054014.1_2792666_2793494_-,NA|216aa|up_2|NZ_CP054014.1_2794808_2795456_-,NA|220aa|down_4|NZ_CP054014.1_2812639_2813299_-,NA|218aa|down_5|NZ_CP054014.1_2813301_2813955_-	NA|377aa|up_9|NZ_CP054014.1_2788118_2789249_+	COG4833, COG4833, Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]	NA|228aa|up_8|NZ_CP054014.1_2789237_2789921_-	PRK10847, PRK10847, DedA family protein	NA|345aa|up_7|NZ_CP054014.1_2790016_2791051_+	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional	NA|461aa|up_6|NZ_CP054014.1_2791062_2792445_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|276aa|up_5|NZ_CP054014.1_2792666_2793494_-	NA	NA|138aa|up_4|NZ_CP054014.1_2793600_2794014_+	pfam11349, DUF3151, Protein of unknown function (DUF3151)	NA|260aa|up_3|NZ_CP054014.1_2794018_2794798_-	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|216aa|up_2|NZ_CP054014.1_2794808_2795456_-	NA	NA|433aa|up_1|NZ_CP054014.1_2795546_2796845_+	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|215aa|up_0|NZ_CP054014.1_2796841_2797486_+	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|127aa|down_0|NZ_CP054014.1_2808228_2808609_-	cd01279, HTH_HspR-like, Helix-Turn-Helix DNA binding domain of HspR-like transcription regulators	NA|396aa|down_1|NZ_CP054014.1_2808608_2809796_-	PRK14279, PRK14279, molecular chaperone DnaJ	NA|236aa|down_2|NZ_CP054014.1_2809831_2810539_-	PRK14142, PRK14142, heat shock protein GrpE; Provisional	NA|626aa|down_3|NZ_CP054014.1_2810535_2812413_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|220aa|down_4|NZ_CP054014.1_2812639_2813299_-	NA	NA|218aa|down_5|NZ_CP054014.1_2813301_2813955_-	NA	NA|329aa|down_6|NZ_CP054014.1_2813957_2814944_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|488aa|down_7|NZ_CP054014.1_2815282_2816746_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|187aa|down_8|NZ_CP054014.1_2817306_2817867_+	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein]	NA|494aa|down_9|NZ_CP054014.1_2818009_2819491_-	COG0699, COG0699, Predicted GTPases (dynamin-related) [General function prediction only]
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	11	2869495-2869591	4	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP054014.1_2855192_2855675_+,NA|101aa|up_1|NZ_CP054014.1_2868453_2868756_-,NA	NA|239aa|up_9|NZ_CP054014.1_2854418_2855135_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP054014.1_2855192_2855675_+	NA	NA|224aa|up_7|NZ_CP054014.1_2855662_2856334_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP054014.1_2856536_2866082_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP054014.1_2866089_2866998_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP054014.1_2866994_2867627_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP054014.1_2867762_2868188_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP054014.1_2868184_2868406_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP054014.1_2868453_2868756_-	NA	NA|76aa|up_0|NZ_CP054014.1_2868752_2868980_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP054014.1_2871076_2872474_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP054014.1_2872483_2873287_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP054014.1_2873275_2874061_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP054014.1_2874167_2875370_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP054014.1_2875356_2876352_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP054014.1_2876348_2877734_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP054014.1_2877730_2879149_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP054014.1_2879195_2880083_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP054014.1_2880093_2880384_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP054014.1_2880413_2880707_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	12	2869672-2869942	5	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	0	0	NA	NA	NA	4	4	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP054014.1_2855192_2855675_+,NA|101aa|up_1|NZ_CP054014.1_2868453_2868756_-,NA	NA|239aa|up_9|NZ_CP054014.1_2854418_2855135_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP054014.1_2855192_2855675_+	NA	NA|224aa|up_7|NZ_CP054014.1_2855662_2856334_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP054014.1_2856536_2866082_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP054014.1_2866089_2866998_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP054014.1_2866994_2867627_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP054014.1_2867762_2868188_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP054014.1_2868184_2868406_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP054014.1_2868453_2868756_-	NA	NA|76aa|up_0|NZ_CP054014.1_2868752_2868980_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP054014.1_2871076_2872474_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP054014.1_2872483_2873287_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP054014.1_2873275_2874061_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP054014.1_2874167_2875370_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP054014.1_2875356_2876352_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP054014.1_2876348_2877734_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP054014.1_2877730_2879149_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP054014.1_2879195_2880083_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP054014.1_2880093_2880384_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP054014.1_2880413_2880707_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	13	2870212-2870553	6	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCCGCCGTTGCCACCGTTGCCGAA	24	1	1	2870236-2870256	NZ_CP054014.1_3100119-3100139	NA	5	5	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|161aa|up_8|NZ_CP054014.1_2855192_2855675_+,NA|101aa|up_1|NZ_CP054014.1_2868453_2868756_-,NA	NA|239aa|up_9|NZ_CP054014.1_2854418_2855135_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|161aa|up_8|NZ_CP054014.1_2855192_2855675_+	NA	NA|224aa|up_7|NZ_CP054014.1_2855662_2856334_-	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|3182aa|up_6|NZ_CP054014.1_2856536_2866082_+	pfam00823, PPE, PPE family	NA|303aa|up_5|NZ_CP054014.1_2866089_2866998_-	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|211aa|up_4|NZ_CP054014.1_2866994_2867627_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|142aa|up_3|NZ_CP054014.1_2867762_2868188_-	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|74aa|up_2|NZ_CP054014.1_2868184_2868406_-	PHA01748, PHA01748, hypothetical protein	NA|101aa|up_1|NZ_CP054014.1_2868453_2868756_-	NA	NA|76aa|up_0|NZ_CP054014.1_2868752_2868980_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|466aa|down_0|NZ_CP054014.1_2871076_2872474_+	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|268aa|down_1|NZ_CP054014.1_2872483_2873287_+	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|262aa|down_2|NZ_CP054014.1_2873275_2874061_-	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|401aa|down_3|NZ_CP054014.1_2874167_2875370_+	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|332aa|down_4|NZ_CP054014.1_2875356_2876352_-	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|462aa|down_5|NZ_CP054014.1_2876348_2877734_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|473aa|down_6|NZ_CP054014.1_2877730_2879149_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|296aa|down_7|NZ_CP054014.1_2879195_2880083_-	pfam14011, ESX-1_EspG, EspG family	NA|97aa|down_8|NZ_CP054014.1_2880093_2880384_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|down_9|NZ_CP054014.1_2880413_2880707_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	14	2897756-2898833	6	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CGGNGCCGGCGGNNNCGGCGG	21	1	5	2898750-2898773|2898750-2898773|2898750-2898773|2898750-2898773|2898750-2898773	NZ_CP054014.1_2895744-2895767|NZ_CP054014.1_2391020-2390997|NZ_CP054014.1_807245-807268|NZ_CP054014.1_2304626-2304603|NZ_CP054014.1_1374572-1374595	NA	20	20	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA,NA|61aa|down_0|NZ_CP054014.1_2899032_2899215_+	NA|97aa|up_9|NZ_CP054014.1_2880093_2880384_-	COG4842, COG4842, Uncharacterized protein conserved in bacteria [Function unknown]	NA|98aa|up_8|NZ_CP054014.1_2880413_2880707_-	TIGR03930, WXG100_ESAT6, WXG100 family type VII secretion target	NA|514aa|up_7|NZ_CP054014.1_2880755_2882297_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|103aa|up_6|NZ_CP054014.1_2882299_2882608_-	pfam00934, PE, PE family	NA|1331aa|up_5|NZ_CP054014.1_2882604_2886597_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|539aa|up_4|NZ_CP054014.1_2886593_2888210_-	pfam05108, T7SS_ESX1_EccB, Type VII secretion system ESX-1, transport TM domain B	NA|632aa|up_3|NZ_CP054014.1_2888206_2890102_-	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|303aa|up_2|NZ_CP054014.1_2890325_2891234_-	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|537aa|up_1|NZ_CP054014.1_2891257_2892868_-	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|903aa|up_0|NZ_CP054014.1_2893158_2895867_+	pfam00934, PE, PE family	NA|61aa|down_0|NZ_CP054014.1_2899032_2899215_+	NA	NA|143aa|down_1|NZ_CP054014.1_2899238_2899667_+	cd18678, PIN_MtVapC25_VapC33-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC25, VapC33, and related proteins	NA|307aa|down_2|NZ_CP054014.1_2899706_2900627_-	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	NA|242aa|down_3|NZ_CP054014.1_2900716_2901442_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|194aa|down_4|NZ_CP054014.1_2901371_2901953_-	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|207aa|down_5|NZ_CP054014.1_2902049_2902670_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|378aa|down_6|NZ_CP054014.1_2902666_2903800_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|732aa|down_7|NZ_CP054014.1_2903913_2906109_+	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|561aa|down_8|NZ_CP054014.1_2906125_2907808_-	PRK07788, PRK07788, acyl-CoA synthetase; Validated	NA|398aa|down_9|NZ_CP054014.1_2907843_2909037_+	COG3285, COG3285, Predicted eukaryotic-type DNA primase [DNA replication, recombination, and repair]
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	15	3531825-3531913	7	CRISPRCasFinder	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	GGCCGTCATCCGGCCCGCATCGTCGCCGAGC	31	0	0	NA	NA	NA	1	1	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|126aa|up_6|NZ_CP054014.1_3526211_3526589_-,NA|233aa|down_0|NZ_CP054014.1_3532109_3532808_+,NA|257aa|down_6|NZ_CP054014.1_3540555_3541326_+	NA|152aa|up_9|NZ_CP054014.1_3524076_3524532_+	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function	NA|265aa|up_8|NZ_CP054014.1_3524538_3525333_+	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|225aa|up_7|NZ_CP054014.1_3525438_3526113_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|126aa|up_6|NZ_CP054014.1_3526211_3526589_-	NA	NA|246aa|up_5|NZ_CP054014.1_3526696_3527434_+	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|228aa|up_4|NZ_CP054014.1_3527433_3528117_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|274aa|up_3|NZ_CP054014.1_3528248_3529070_+	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|398aa|up_2|NZ_CP054014.1_3529075_3530269_+	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|328aa|up_1|NZ_CP054014.1_3530261_3531245_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|173aa|up_0|NZ_CP054014.1_3531245_3531764_-	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|233aa|down_0|NZ_CP054014.1_3532109_3532808_+	NA	NA|652aa|down_1|NZ_CP054014.1_3532843_3534799_-	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|542aa|down_2|NZ_CP054014.1_3535506_3537132_+	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|309aa|down_3|NZ_CP054014.1_3537133_3538060_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|288aa|down_4|NZ_CP054014.1_3538052_3538916_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|549aa|down_5|NZ_CP054014.1_3538912_3540559_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|257aa|down_6|NZ_CP054014.1_3540555_3541326_+	NA	NA|288aa|down_7|NZ_CP054014.1_3542080_3542944_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|351aa|down_8|NZ_CP054014.1_3543442_3544495_+	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|388aa|down_9|NZ_CP054014.1_3544491_3545655_+	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	16	3692834-3693419	7	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGGNGCCGCCNNTGC	19	6	67	3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3692970-3692995|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693087-3693112|3693132-3693166|3693186-3693214|3693234-3693268|3693288-3693331	NZ_CP054014.1_2392081-2392106|NZ_CP054014.1_2897565-2897540|NZ_CP054014.1_273710-273685|NZ_CP054014.1_2558861-2558836|NZ_CP054014.1_807288-807263|NZ_CP054014.1_1374381-1374356|NZ_CP054014.1_1658381-1658356|NZ_CP054014.1_2393619-2393644|NZ_CP054014.1_2557169-2557144|NZ_CP054014.1_3694320-3694345|NZ_CP054014.1_3694365-3694390|NZ_CP054014.1_3698448-3698473|NZ_CP054014.1_3698520-3698545|NZ_CP054014.1_3698940-3698965|NZ_CP054014.1_3861209-3861234|NZ_CP054014.1_3694230-3694255|NZ_CP054014.1_3694302-3694327|NZ_CP054014.1_3694311-3694336|NZ_CP054014.1_3694383-3694408|NZ_CP054014.1_3698290-3698315|NZ_CP054014.1_1600716-1600691|NZ_CP054014.1_1600725-1600700|NZ_CP054014.1_1659326-1659301|NZ_CP054014.1_3694239-3694264|NZ_CP054014.1_3694320-3694345|NZ_CP054014.1_3694374-3694399|NZ_CP054014.1_3698520-3698545|NZ_CP054014.1_3698529-3698554|NZ_CP054014.1_3705027-3705052|NZ_CP054014.1_3705270-3705295|NZ_CP054014.1_3710327-3710352|NZ_CP054014.1_3710748-3710773|NZ_CP054014.1_3838383-3838408|NZ_CP054014.1_1742625-1742600|NZ_CP054014.1_2042620-2042595|NZ_CP054014.1_2391742-2391767|NZ_CP054014.1_2393619-2393644|NZ_CP054014.1_2393628-2393653|NZ_CP054014.1_3694212-3694237|NZ_CP054014.1_3694221-3694246|NZ_CP054014.1_3694293-3694318|NZ_CP054014.1_3698281-3698306|NZ_CP054014.1_3698793-3698818|NZ_CP054014.1_3710318-3710343|NZ_CP054014.1_3710739-3710764|NZ_CP054014.1_3710835-3710860|NZ_CP054014.1_3861209-3861234|NZ_CP054014.1_1575179-1575154|NZ_CP054014.1_1598985-1598960|NZ_CP054014.1_1598994-1598969|NZ_CP054014.1_1600818-1600793|NZ_CP054014.1_1600827-1600802|NZ_CP054014.1_1659335-1659310|NZ_CP054014.1_1742763-1742738|NZ_CP054014.1_2042629-2042604|NZ_CP054014.1_2263378-2263353|NZ_CP054014.1_2558465-2558440|NZ_CP054014.1_2558861-2558836|NZ_CP054014.1_2559662-2559637|NZ_CP054014.1_2894920-2894895|NZ_CP054014.1_2895139-2895114|NZ_CP054014.1_3899618-3899593|NZ_CP054014.1_3903341-3903316|NZ_CP054014.1_3694347-3694381|NZ_CP054014.1_3694401-3694429|NZ_CP054014.1_3694449-3694483|NZ_CP054014.1_3694503-3694546	NA	10	10	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|280aa|up_2|NZ_CP054014.1_3688669_3689509_-,NA	NA|344aa|up_9|NZ_CP054014.1_3681153_3682185_-	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|395aa|up_8|NZ_CP054014.1_3682226_3683411_-	PRK08313, PRK08313, thiolase domain-containing protein	NA|355aa|up_7|NZ_CP054014.1_3683427_3684492_-	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|304aa|up_6|NZ_CP054014.1_3684507_3685419_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|348aa|up_5|NZ_CP054014.1_3685571_3686615_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_4|NZ_CP054014.1_3686679_3687390_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_3|NZ_CP054014.1_3687418_3688615_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_2|NZ_CP054014.1_3688669_3689509_-	NA	NA|264aa|up_1|NZ_CP054014.1_3689604_3690396_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_0|NZ_CP054014.1_3690469_3692116_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|down_0|NZ_CP054014.1_3697046_3697703_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|516aa|down_1|NZ_CP054014.1_3700472_3702020_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1618aa|down_2|NZ_CP054014.1_3702186_3707040_-	pfam00934, PE, PE family	NA|503aa|down_3|NZ_CP054014.1_3711650_3713159_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_4|NZ_CP054014.1_3713229_3714351_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_5|NZ_CP054014.1_3714375_3715578_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_6|NZ_CP054014.1_3715792_3715984_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_7|NZ_CP054014.1_3716008_3716962_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_8|NZ_CP054014.1_3717187_3717952_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_9|NZ_CP054014.1_3717986_3718829_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	17	3693506-3694096	8	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGGTGCCGCCGNNG	18	8	12	3693524-3693568|3693587-3693637|3693656-3693718|3693737-3693772|3693791-3693820|3693839-3693874|3693965-3694000|3693965-3694000|3693965-3694000|3693965-3694000|3693965-3694000|3694019-3694078	NZ_CP054014.1_3694133-3694177|NZ_CP054014.1_3694196-3694246|NZ_CP054014.1_3694265-3694327|NZ_CP054014.1_3694346-3694381|NZ_CP054014.1_3694400-3694429|NZ_CP054014.1_3694448-3694483|NZ_CP054014.1_3694574-3694609|NZ_CP054014.1_3694925-3694960|NZ_CP054014.1_3695084-3695119|NZ_CP054014.1_3695435-3695470|NZ_CP054014.1_3695747-3695782|NZ_CP054014.1_3693410-3693469	NA	9	9	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|280aa|up_2|NZ_CP054014.1_3688669_3689509_-,NA	NA|344aa|up_9|NZ_CP054014.1_3681153_3682185_-	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD	NA|395aa|up_8|NZ_CP054014.1_3682226_3683411_-	PRK08313, PRK08313, thiolase domain-containing protein	NA|355aa|up_7|NZ_CP054014.1_3683427_3684492_-	PRK07937, PRK07937, lipid-transfer protein; Provisional	NA|304aa|up_6|NZ_CP054014.1_3684507_3685419_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|348aa|up_5|NZ_CP054014.1_3685571_3686615_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_4|NZ_CP054014.1_3686679_3687390_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_3|NZ_CP054014.1_3687418_3688615_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_2|NZ_CP054014.1_3688669_3689509_-	NA	NA|264aa|up_1|NZ_CP054014.1_3689604_3690396_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_0|NZ_CP054014.1_3690469_3692116_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|down_0|NZ_CP054014.1_3697046_3697703_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|516aa|down_1|NZ_CP054014.1_3700472_3702020_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1618aa|down_2|NZ_CP054014.1_3702186_3707040_-	pfam00934, PE, PE family	NA|503aa|down_3|NZ_CP054014.1_3711650_3713159_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_4|NZ_CP054014.1_3713229_3714351_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_5|NZ_CP054014.1_3714375_3715578_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_6|NZ_CP054014.1_3715792_3715984_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_7|NZ_CP054014.1_3716008_3716962_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_8|NZ_CP054014.1_3717187_3717952_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_9|NZ_CP054014.1_3717986_3718829_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	18	3707368-3707792	9	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CCGCCGGTGCCGCCGTTGCCGCC	23	1	1	3707748-3707769	NZ_CP054014.1_1613417-1613396	NA	7	7	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|280aa|up_5|NZ_CP054014.1_3688669_3689509_-,NA	NA|304aa|up_9|NZ_CP054014.1_3684507_3685419_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|348aa|up_8|NZ_CP054014.1_3685571_3686615_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_7|NZ_CP054014.1_3686679_3687390_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_6|NZ_CP054014.1_3687418_3688615_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_5|NZ_CP054014.1_3688669_3689509_-	NA	NA|264aa|up_4|NZ_CP054014.1_3689604_3690396_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_3|NZ_CP054014.1_3690469_3692116_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|up_2|NZ_CP054014.1_3697046_3697703_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|516aa|up_1|NZ_CP054014.1_3700472_3702020_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1618aa|up_0|NZ_CP054014.1_3702186_3707040_-	pfam00934, PE, PE family	NA|503aa|down_0|NZ_CP054014.1_3711650_3713159_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_1|NZ_CP054014.1_3713229_3714351_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_2|NZ_CP054014.1_3714375_3715578_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_3|NZ_CP054014.1_3715792_3715984_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_4|NZ_CP054014.1_3716008_3716962_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_5|NZ_CP054014.1_3717187_3717952_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_6|NZ_CP054014.1_3717986_3718829_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_7|NZ_CP054014.1_3718848_3720051_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_8|NZ_CP054014.1_3720050_3721103_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|358aa|down_9|NZ_CP054014.1_3721092_3722166_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein
GCF_013267655.1_ASM1326765v1	NZ_CP054014	Mycobacterium tuberculosis strain FDAARGOS_756 chromosome, complete genome	19	3708548-3709227	10	CRT	no		c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	Orphan	CGTTGCCGCCGTNGCCGCCGTTGCCNCCGTNNCCG	35	0	0	NA	NA	NA	7	7	Orphan	c2c9_V-U4,cas6,cas10,csm2gr11,csm3gr7,csa3,DEDDh,cas4,WYL,DinG,cas3	NA|280aa|up_5|NZ_CP054014.1_3688669_3689509_-,NA	NA|304aa|up_9|NZ_CP054014.1_3684507_3685419_-	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only]	NA|348aa|up_8|NZ_CP054014.1_3685571_3686615_+	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family	NA|237aa|up_7|NZ_CP054014.1_3686679_3687390_-	pfam06314, ADC, Acetoacetate decarboxylase (ADC)	NA|399aa|up_6|NZ_CP054014.1_3687418_3688615_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|280aa|up_5|NZ_CP054014.1_3688669_3689509_-	NA	NA|264aa|up_4|NZ_CP054014.1_3689604_3690396_-	PRK07799, PRK07799, crotonase/enoyl-CoA hydratase family protein	NA|549aa|up_3|NZ_CP054014.1_3690469_3692116_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|219aa|up_2|NZ_CP054014.1_3697046_3697703_+	PRK07798, PRK07798, acyl-CoA synthetase; Validated	NA|516aa|up_1|NZ_CP054014.1_3700472_3702020_+	PRK07586, PRK07586, acetolactate synthase large subunit	NA|1618aa|up_0|NZ_CP054014.1_3702186_3707040_-	pfam00934, PE, PE family	NA|503aa|down_0|NZ_CP054014.1_3711650_3713159_-	PRK07867, PRK07867, acyl-CoA synthetase; Validated	NA|374aa|down_1|NZ_CP054014.1_3713229_3714351_-	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|401aa|down_2|NZ_CP054014.1_3714375_3715578_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|64aa|down_3|NZ_CP054014.1_3715792_3715984_+	COG1141, Fer, Ferredoxin [Energy production and conversion]	NA|318aa|down_4|NZ_CP054014.1_3716008_3716962_+	PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|255aa|down_5|NZ_CP054014.1_3717187_3717952_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|281aa|down_6|NZ_CP054014.1_3717986_3718829_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|401aa|down_7|NZ_CP054014.1_3718848_3720051_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|351aa|down_8|NZ_CP054014.1_3720050_3721103_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|358aa|down_9|NZ_CP054014.1_3721092_3722166_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein
