The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP054013	Mycobacterium tuberculosis strain FDAARGOS_757 chromosome, complete genome	4417931	137003	224667	4417931	transposase,protease,tRNA	Burkholderia_virus(28.57%)	56	NA	NA
WP_087902221.1|137003_138264_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003905037.1|138319_140032_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_009935306.1|139964_140903_-	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003917150.1|140911_142279_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.0	3.1e-18
WP_003417415.1|142347_143565_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|143660_145169_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|145165_146317_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|146507_147353_-|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003900026.1|147827_148268_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|148301_149171_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|149191_150202_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003905041.1|150474_151119_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|151185_152415_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|152697_154047_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|154058_155198_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|155194_155926_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_009938644.1|165281_166298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417619.1|171494_171752_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_010886166.1|172007_181481_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|182106_182553_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003900675.1|182589_183330_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_009938650.1|183624_183912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009939158.1|184248_195399_-	PPE family protein	NA	NA	NA	NA	NA
WP_003417738.1|195642_196437_-	BBE domain-containing protein	NA	NA	NA	NA	NA
WP_003417739.1|196518_196890_-	FAD-binding oxidoreductase	NA	A0A0B5JBT9	Pandoravirus	56.4	3.3e-15
WP_157132559.1|196787_197006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417741.1|197032_197293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003417745.1|197407_197797_+	DUF732 domain-containing protein	NA	NA	NA	NA	NA
WP_003417749.1|197810_198104_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_003417751.1|198100_198946_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	NA	NA	NA	NA
WP_003417757.1|199069_199345_+	type II toxin-antitoxin system antitoxin RelJ	NA	NA	NA	NA	NA
WP_003417760.1|199341_199599_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_003900033.1|199640_200831_+	NADH:flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003417765.1|200947_201316_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003417767.1|201312_201864_-	pentapeptide repeat protein MfpA	NA	NA	NA	NA	NA
WP_003417769.1|201870_202452_-	ATP/GTP-binding protein	NA	NA	NA	NA	NA
WP_003417772.1|202432_202801_-	DUF742 domain-containing protein	NA	NA	NA	NA	NA
WP_003417776.1|202778_203171_-	roadblock/LC7 domain-containing protein	NA	NA	NA	NA	NA
WP_003900676.1|203167_205798_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003417878.1|206033_206498_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_009938654.1|206864_208640_+	PE family protein	NA	NA	NA	NA	NA
WP_003417881.1|208640_209285_-	nitroreductase family protein	NA	NA	NA	NA	NA
WP_003417882.1|209283_209718_+	TIGR03667 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003908228.1|209806_213046_-	error-prone DNA polymerase DnaE2	NA	A0A1C9LWS4	Streptomyces_phage	32.4	1.6e-118
WP_003900036.1|213237_214578_+	diacyglycerol O-acyltransferase	NA	NA	NA	NA	NA
WP_003417892.1|214619_215795_+	trehalose-phosphatase	NA	NA	NA	NA	NA
WP_003417895.1|215848_215953_+	PE family protein	NA	NA	NA	NA	NA
WP_003900037.1|216031_216673_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003417897.1|216673_216922_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003417900.1|216926_218354_+	amidase	NA	NA	NA	NA	NA
WP_003417903.1|218461_219115_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_003417905.1|219153_220659_-	type B diterpene cyclase	NA	NA	NA	NA	NA
WP_003417908.1|220663_221554_-	diterpene synthase	NA	NA	NA	NA	NA
WP_003417910.1|221562_223173_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_075155233.1|223117_223363_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_087902221.1|223405_224667_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
>prophage 3
NZ_CP054013	Mycobacterium tuberculosis strain FDAARGOS_757 chromosome, complete genome	4417931	1729603	1788176	4417931	transposase,protease,bacteriocin,tRNA	Burkholderia_virus(16.67%)	53	NA	NA
WP_087902221.1|1729603_1730864_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935676.1|1730919_1732014_+|transposase	IS110-like element IS1547 family transposase	transposase	NA	NA	NA	NA
WP_003404092.1|1732003_1732801_-|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003404098.1|1732797_1733805_-	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_003916725.1|1733849_1735151_+	M18 family aminopeptidase	NA	NA	NA	NA	NA
WP_003898592.1|1735162_1735510_+	VOC family protein	NA	NA	NA	NA	NA
WP_003404111.1|1735503_1736160_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003404114.1|1736351_1738616_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	64.3	8.1e-274
WP_003404117.1|1738612_1739242_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003404120.1|1739362_1740319_+	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA	NA	NA	NA	NA
WP_003898594.1|1740263_1741862_-	exopolysaccharide phosphotransferase CpsY	NA	NA	NA	NA	NA
WP_003404127.1|1742166_1742556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003911290.1|1742696_1744226_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	30.6	2.5e-45
WP_003404132.1|1744256_1745351_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	37.3	2.3e-56
WP_003404135.1|1745436_1745619_-	DUF3073 domain-containing protein	NA	NA	NA	NA	NA
WP_003404137.1|1745765_1746872_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_003916726.1|1746954_1747824_+	aminodeoxychorismate lyase	NA	NA	NA	NA	NA
WP_003898596.1|1747869_1748550_-	FABP family protein	NA	NA	NA	NA	NA
WP_003404278.1|1748712_1749015_-	DUF1416 domain-containing protein	NA	NA	NA	NA	NA
WP_003404293.1|1749016_1749850_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003898598.1|1750142_1750565_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_003404298.1|1750561_1751374_-	mannan chain length control protein LmeA	NA	NA	NA	NA	NA
WP_003898599.1|1751503_1752271_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.5	3.1e-15
WP_003404307.1|1752267_1753215_+	mycothiol synthase	NA	NA	NA	NA	NA
WP_003404312.1|1753257_1754034_+	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.1	1.6e-16
WP_003404314.1|1754089_1754731_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003898600.1|1754788_1756843_-	LCP family protein	NA	NA	NA	NA	NA
WP_003898601.1|1757008_1758178_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003404321.1|1758265_1759282_-	acyl-ACP desaturase DesA1	NA	NA	NA	NA	NA
WP_003404326.1|1759443_1760085_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003898602.1|1760165_1761221_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_003404335.1|1761272_1761665_-	Ni(II)/Co(II)-sensing metalloregulatory transcriptional repressor KmtR	NA	NA	NA	NA	NA
WP_003404336.1|1761722_1762145_-	nucleoside deaminase	NA	NA	NA	NA	NA
WP_003916729.1|1762106_1762397_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003404349.1|1762501_1763407_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404352.1|1763425_1764241_-	TIGR04255 family protein	NA	NA	NA	NA	NA
WP_010886090.1|1768368_1771017_-	PE family protein	NA	NA	NA	NA	NA
WP_003404362.1|1771484_1772129_+	sensor domain-containing protein	NA	NA	NA	NA	NA
WP_003898607.1|1772109_1772661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003906455.1|1772810_1773464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003404368.1|1773534_1774563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003898609.1|1775251_1776022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003404373.1|1776108_1776921_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003404376.1|1776988_1777849_-	proline-specific peptidase family protein	NA	NA	NA	NA	NA
WP_003404382.1|1778643_1779936_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404384.1|1779919_1780924_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA	NA
WP_003404388.1|1780987_1781638_-	two-component system response regulator NarL	NA	NA	NA	NA	NA
WP_003898611.1|1781721_1782999_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003404392.1|1783211_1784726_-	multicopper oxidase MmcO	NA	NA	NA	NA	NA
WP_003901025.1|1784874_1785267_+	lipoprotein LpqS	NA	NA	NA	NA	NA
WP_009935595.1|1785469_1786588_+	S-sulfocysteine synthase CysK2	NA	NA	NA	NA	NA
WP_003404402.1|1786587_1787847_+	MFS transporter	NA	NA	NA	NA	NA
WP_003404404.1|1787843_1788176_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP054013	Mycobacterium tuberculosis strain FDAARGOS_757 chromosome, complete genome	4417931	3785355	3820721	4417931	capsid,head,transposase,protease,terminase,integrase,tRNA	Tupanvirus(11.11%)	40	3814156:3814183	3825138:3825165
WP_003413486.1|3785355_3787434_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|3787542_3787770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|3787766_3789152_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|3789496_3789997_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|3790013_3790454_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|3790600_3791278_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|3791262_3791616_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|3791628_3792054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|3792050_3792725_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|3792802_3793624_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|3793759_3794653_+	universal stress protein TB31.7	NA	NA	NA	NA	NA
WP_003413594.1|3794655_3795474_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|3795488_3796670_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|3796728_3797160_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|3797673_3798915_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|3799224_3799587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|3799933_3801058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|3801059_3801599_+	archease	NA	NA	NA	NA	NA
WP_003413616.1|3801738_3803037_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|3803075_3803357_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|3803501_3803987_-	non-heme di-iron catalase	NA	NA	NA	NA	NA
WP_003908019.1|3804013_3804268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|3804271_3806608_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|3806636_3806879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|3806879_3807557_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|3807752_3808409_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|3808571_3809018_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|3809192_3809525_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|3809644_3810004_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|3810105_3810564_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|3810699_3811080_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|3811076_3812573_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|3812807_3812999_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
3814156:3814183	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|3814289_3814721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|3814717_3815716_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|3815729_3816194_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_087902221.1|3816326_3817587_+|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009935349.1|3817961_3819401_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|3819408_3819942_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|3820094_3820721_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
3825138:3825165	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
