assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013267395.1_ASM1326739v1	NZ_CP053987	Achromobacter denitrificans strain FDAARGOS_786 chromosome, complete genome	1	2979531-2979636	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,DinG	Orphan	TTTTTGTCTTGGGGCGGCCCTGCGA	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,DinG	NA,NA	NA|256aa|up_9|NZ_CP053987.1_2968047_2968815_-	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|262aa|up_8|NZ_CP053987.1_2968946_2969732_+	cd01639, IMPase, IMPase, inositol monophosphatase and related domains	NA|333aa|up_7|NZ_CP053987.1_2969897_2970896_-	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|168aa|up_6|NZ_CP053987.1_2970939_2971443_-	COG4314, NosL, Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion]	NA|277aa|up_5|NZ_CP053987.1_2971439_2972270_-	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein	NA|300aa|up_4|NZ_CP053987.1_2972266_2973166_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|433aa|up_3|NZ_CP053987.1_2973162_2974461_-	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD	NA|639aa|up_2|NZ_CP053987.1_2974466_2976383_-	PRK02888, PRK02888, nitrous-oxide reductase; Validated	NA|753aa|up_1|NZ_CP053987.1_2976499_2978758_-	COG3901, NosR, Regulator of nitric oxide reductase transcription [Transcription]	NA|150aa|up_0|NZ_CP053987.1_2979041_2979491_+	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase	NA|528aa|down_0|NZ_CP053987.1_2979773_2981357_+	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|288aa|down_1|NZ_CP053987.1_2981375_2982239_+	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|256aa|down_2|NZ_CP053987.1_2982754_2983522_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|down_3|NZ_CP053987.1_2983514_2984024_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|228aa|down_4|NZ_CP053987.1_2984158_2984842_-	sd00006, TPR, Tetratricopeptide repeat	NA|485aa|down_5|NZ_CP053987.1_2985119_2986574_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|214aa|down_6|NZ_CP053987.1_2986594_2987236_+	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|322aa|down_7|NZ_CP053987.1_2987272_2988238_+	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|355aa|down_8|NZ_CP053987.1_2988299_2989364_+	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	NA|422aa|down_9|NZ_CP053987.1_2989540_2990806_+	PRK06635, PRK06635, aspartate kinase; Reviewed
GCF_013267395.1_ASM1326739v1	NZ_CP053987	Achromobacter denitrificans strain FDAARGOS_786 chromosome, complete genome	2	5530137-5530256	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,DinG	Orphan	TTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCC	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,DinG	NA|77aa|up_5|NZ_CP053987.1_5523661_5523892_-,NA	NA|653aa|up_9|NZ_CP053987.1_5511227_5513186_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|452aa|up_8|NZ_CP053987.1_5513236_5514592_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|488aa|up_7|NZ_CP053987.1_5521163_5522627_+	PRK11712, PRK11712, ribonuclease G; Provisional	NA|234aa|up_6|NZ_CP053987.1_5522833_5523535_+	pfam11254, DUF3053, Protein of unknown function (DUF3053)	NA|77aa|up_5|NZ_CP053987.1_5523661_5523892_-	NA	NA|602aa|up_4|NZ_CP053987.1_5524014_5525820_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|592aa|up_3|NZ_CP053987.1_5525980_5527756_-	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA	NA|324aa|up_2|NZ_CP053987.1_5527859_5528831_+	pfam01075, Glyco_transf_9, Glycosyltransferase family 9 (heptosyltransferase)	NA|255aa|up_1|NZ_CP053987.1_5528843_5529608_+	cd06259, YdcF-like, YdcF-like	NA|90aa|up_0|NZ_CP053987.1_5529653_5529923_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|197aa|down_0|NZ_CP053987.1_5530348_5530939_+	cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain	NA|387aa|down_1|NZ_CP053987.1_5530935_5532096_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|242aa|down_2|NZ_CP053987.1_5532070_5532796_-	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands	NA|370aa|down_3|NZ_CP053987.1_5533026_5534136_-	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences	NA|251aa|down_4|NZ_CP053987.1_5534132_5534885_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|283aa|down_5|NZ_CP053987.1_5534881_5535730_-	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins	NA|367aa|down_6|NZ_CP053987.1_5535726_5536827_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|1164aa|down_7|NZ_CP053987.1_5536826_5540318_-	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	NA|300aa|down_8|NZ_CP053987.1_5540433_5541333_+	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO	NA|432aa|down_9|NZ_CP053987.1_5541379_5542675_-	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_013267395.1_ASM1326739v1	NZ_CP053987	Achromobacter denitrificans strain FDAARGOS_786 chromosome, complete genome	3	6224691-6224808	3	CRISPRCasFinder	no	WYL	DEDDh,csa3,WYL,RT,DinG	Unclear	CAGCAAGCGAGCGTAGCGAGCGCGGCGTGGGGGCCC	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,DinG	NA,NA	NA|515aa|up_9|NZ_CP053987.1_6212073_6213618_-	pfam07364, DUF1485, Metallopeptidase family M81	NA|531aa|up_8|NZ_CP053987.1_6213632_6215225_-	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|617aa|up_7|NZ_CP053987.1_6215254_6217105_-	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional	NA|278aa|up_6|NZ_CP053987.1_6217108_6217942_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|314aa|up_5|NZ_CP053987.1_6217941_6218883_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|302aa|up_4|NZ_CP053987.1_6219143_6220049_-	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold	NA|444aa|up_3|NZ_CP053987.1_6220150_6221482_+	cd16142, ARS_like, uncharacterized arylsulfatase subfamily	NA|322aa|up_2|NZ_CP053987.1_6221522_6222488_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|247aa|up_1|NZ_CP053987.1_6222495_6223236_-	PRK12938, PRK12938, 3-ketoacyl-ACP reductase	NA|447aa|up_0|NZ_CP053987.1_6223245_6224586_-	COG2851, CitM, H+/citrate symporter [Energy production and conversion]	NA|232aa|down_0|NZ_CP053987.1_6224833_6225529_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|468aa|down_1|NZ_CP053987.1_6225531_6226935_+	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|376aa|down_2|NZ_CP053987.1_6226927_6228055_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|362aa|down_3|NZ_CP053987.1_6228290_6229376_+	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|97aa|down_4|NZ_CP053987.1_6229597_6229888_+	pfam13663, DUF4148, Domain of unknown function (DUF4148)	NA|323aa|down_5|NZ_CP053987.1_6229969_6230938_-	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	NA|283aa|down_6|NZ_CP053987.1_6231118_6231967_+	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]	NA|515aa|down_7|NZ_CP053987.1_6231975_6233520_+	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD	NA|310aa|down_8|NZ_CP053987.1_6233542_6234472_+	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|409aa|down_9|NZ_CP053987.1_6234474_6235701_+	pfam00144, Beta-lactamase, Beta-lactamase
GCF_013267395.1_ASM1326739v1	NZ_CP053987	Achromobacter denitrificans strain FDAARGOS_786 chromosome, complete genome	4	6413201-6413289	4	CRISPRCasFinder	no		DEDDh,csa3,WYL,RT,DinG	Orphan	CCCGCGCCGGTGTACGTGGCGCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,RT,DinG	NA|66aa|up_1|NZ_CP053987.1_6411893_6412091_-,NA|53aa|down_0|NZ_CP053987.1_6413531_6413690_-,NA|83aa|down_1|NZ_CP053987.1_6413676_6413925_-	NA|551aa|up_9|NZ_CP053987.1_6402041_6403694_-	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily	NA|283aa|up_8|NZ_CP053987.1_6403866_6404715_+	COG1414, IclR, Transcriptional regulator [Transcription]	NA|529aa|up_7|NZ_CP053987.1_6404759_6406346_-	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]	NA|327aa|up_6|NZ_CP053987.1_6406516_6407497_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|302aa|up_5|NZ_CP053987.1_6407535_6408441_-	cd00408, DHDPS-like, Dihydrodipicolinate synthase family	NA|376aa|up_4|NZ_CP053987.1_6408456_6409584_-	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|293aa|up_3|NZ_CP053987.1_6409745_6410624_+	cd08427, PBP2_LTTR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|398aa|up_2|NZ_CP053987.1_6410636_6411830_-	PRK05985, PRK05985, cytosine deaminase; Provisional	NA|66aa|up_1|NZ_CP053987.1_6411893_6412091_-	NA	NA|168aa|up_0|NZ_CP053987.1_6412282_6412786_+	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb	NA|53aa|down_0|NZ_CP053987.1_6413531_6413690_-	NA	NA|83aa|down_1|NZ_CP053987.1_6413676_6413925_-	NA	NA|449aa|down_2|NZ_CP053987.1_6414155_6415502_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|447aa|down_3|NZ_CP053987.1_6415544_6416885_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|264aa|down_4|NZ_CP053987.1_6416962_6417754_-	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|423aa|down_5|NZ_CP053987.1_6417907_6419176_+	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase	NA|520aa|down_6|NZ_CP053987.1_6419326_6420886_+	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|314aa|down_7|NZ_CP053987.1_6421118_6422060_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|290aa|down_8|NZ_CP053987.1_6422192_6423062_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|336aa|down_9|NZ_CP053987.1_6423064_6424072_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
