assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	1	990052-990207	1,1	PILER-CR,CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	AGTGTTCCCCGCGCCAGCGGGGATAAACCACCAT,GTGTTCCCCGCGCCAGCGGGGATAAACC	34,28	0	0	NA	NA	I-E:I-E	2,2	2	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP053720.1_988762_988903_-,NA	NA|434aa|up_9|NZ_CP053720.1_979459_980761_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP053720.1_980808_983043_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP053720.1_983120_983369_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP053720.1_983368_983704_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP053720.1_983774_984566_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP053720.1_984793_986431_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP053720.1_986518_987817_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP053720.1_987876_988749_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP053720.1_988762_988903_-	NA	NA|224aa|up_0|NZ_CP053720.1_989041_989713_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP053720.1_990841_992320_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_1|NZ_CP053720.1_993942_994728_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|NZ_CP053720.1_994797_996252_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_3|NZ_CP053720.1_996273_997683_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_4|NZ_CP053720.1_997660_998440_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_5|NZ_CP053720.1_998436_999297_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_6|NZ_CP053720.1_999444_1000020_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_7|NZ_CP053720.1_1000036_1000297_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_8|NZ_CP053720.1_1000287_1001559_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_9|NZ_CP053720.1_1001636_1001999_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	2	1012840-1013052	2,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCGC,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCGC	30,29,30	0	0	NA	NA	I-E:I-E:I-E	2,2,3	3	Unclear	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|192aa|up_9|NZ_CP053720.1_999444_1000020_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_8|NZ_CP053720.1_1000036_1000297_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_7|NZ_CP053720.1_1000287_1001559_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_6|NZ_CP053720.1_1001636_1001999_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_5|NZ_CP053720.1_1002317_1004117_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_4|NZ_CP053720.1_1004116_1005829_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_3|NZ_CP053720.1_1005902_1006637_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas6e|200aa|up_2|NZ_CP053720.1_1010915_1011515_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP053720.1_1011530_1012448_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP053720.1_1012449_1012734_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|524aa|down_0|NZ_CP053720.1_1013062_1014634_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|down_1|NZ_CP053720.1_1014653_1015001_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|226aa|down_2|NZ_CP053720.1_1015000_1015678_-	pfam01527, HTH_Tnp_1, Transposase	NA|346aa|down_3|NZ_CP053720.1_1016145_1017183_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_4|NZ_CP053720.1_1017434_1018343_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_5|NZ_CP053720.1_1018344_1019772_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_6|NZ_CP053720.1_1019771_1020377_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_7|NZ_CP053720.1_1020426_1020750_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_8|NZ_CP053720.1_1020943_1021255_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_9|NZ_CP053720.1_1021273_1021984_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	3	1015730-1016063	2,3	CRT,CRISPRCasFinder	no	cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GNGTTCCCCGCGNCAGCGGGGATAAACCG,GTTCCCCGCGCCAGCGGGGATAAACCG	29,27	0	0	NA	NA	I-E:I-E	5,5	5	Unclear	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|121aa|up_9|NZ_CP053720.1_1001636_1001999_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_8|NZ_CP053720.1_1002317_1004117_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_7|NZ_CP053720.1_1004116_1005829_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_6|NZ_CP053720.1_1005902_1006637_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas6e|200aa|up_5|NZ_CP053720.1_1010915_1011515_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_4|NZ_CP053720.1_1011530_1012448_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_3|NZ_CP053720.1_1012449_1012734_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|524aa|up_2|NZ_CP053720.1_1013062_1014634_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|up_1|NZ_CP053720.1_1014653_1015001_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|226aa|up_0|NZ_CP053720.1_1015000_1015678_-	pfam01527, HTH_Tnp_1, Transposase	NA|346aa|down_0|NZ_CP053720.1_1016145_1017183_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053720.1_1017434_1018343_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053720.1_1018344_1019772_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053720.1_1019771_1020377_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053720.1_1020426_1020750_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053720.1_1020943_1021255_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053720.1_1021273_1021984_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053720.1_1021983_1022463_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053720.1_1022459_1023509_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053720.1_1023489_1024251_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	4	1504642-1504759	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP053720.1_1493927_1494113_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP053720.1_1494125_1495025_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP053720.1_1495217_1496408_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP053720.1_1496404_1497664_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP053720.1_1497653_1499282_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP053720.1_1499554_1500913_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP053720.1_1500917_1501994_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP053720.1_1502456_1503107_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP053720.1_1503160_1503415_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP053720.1_1503414_1504545_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP053720.1_1504778_1507064_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|410aa|down_1|NZ_CP053720.1_1507852_1509081_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|241aa|down_2|NZ_CP053720.1_1512974_1513697_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP053720.1_1513843_1516471_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP053720.1_1516619_1518308_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP053720.1_1518304_1518928_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP053720.1_1519071_1523466_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP053720.1_1523466_1525116_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP053720.1_1525120_1525897_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP053720.1_1525970_1527155_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	5	2090111-2090234	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP053720.1_2099130_2099220_+	NA|471aa|up_9|NZ_CP053720.1_2079565_2080978_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP053720.1_2081534_2081744_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP053720.1_2082198_2082825_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP053720.1_2082845_2084948_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053720.1_2084960_2085599_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053720.1_2085662_2086331_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053720.1_2086327_2087113_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053720.1_2087116_2087929_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053720.1_2087940_2089545_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053720.1_2089670_2089976_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053720.1_2090548_2091805_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053720.1_2091845_2093219_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053720.1_2093433_2094075_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053720.1_2094114_2095263_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053720.1_2095553_2096765_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053720.1_2096877_2097810_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053720.1_2097806_2098832_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053720.1_2099130_2099220_+	NA	NA|390aa|down_8|NZ_CP053720.1_2099385_2100555_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053720.1_2100789_2101371_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	6	2743621-2743712	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|61aa|up_9|NZ_CP053720.1_2732699_2732882_-,NA	NA|61aa|up_9|NZ_CP053720.1_2732699_2732882_-	NA	NA|1321aa|up_8|NZ_CP053720.1_2732960_2736923_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053720.1_2736962_2737601_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053720.1_2737888_2738980_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053720.1_2738979_2739672_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053720.1_2739683_2740070_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053720.1_2740077_2740878_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053720.1_2740887_2741478_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053720.1_2741488_2741983_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053720.1_2742003_2743332_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053720.1_2744135_2744732_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053720.1_2744752_2744980_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053720.1_2745017_2746259_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|83aa|down_3|NZ_CP053720.1_2746551_2746800_-	PRK09784, PRK09784, YccE family protein	NA|295aa|down_4|NZ_CP053720.1_2746917_2747802_-	PRK09784, PRK09784, YccE family protein	NA|327aa|down_5|NZ_CP053720.1_2747910_2748891_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|307aa|down_6|NZ_CP053720.1_2749262_2750183_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_7|NZ_CP053720.1_2750182_2750488_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_8|NZ_CP053720.1_2750639_2751239_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_9|NZ_CP053720.1_2751235_2753782_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	7	2934145-2934349	7,3,3	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|608aa|up_3|NZ_CP053720.1_2928741_2930565_-,NA	NA|329aa|up_9|NZ_CP053720.1_2919093_2920080_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|263aa|up_8|NZ_CP053720.1_2920170_2920959_+	PRK10536, PRK10536, phosphate starvation-inducible protein PhoH	NA|138aa|up_7|NZ_CP053720.1_2921009_2921423_-	PRK14585, pgaD, putative PGA biosynthesis protein; Provisional	NA|442aa|up_6|NZ_CP053720.1_2921424_2922750_-	PRK11204, PRK11204, N-glycosyltransferase; Provisional	NA|467aa|up_5|NZ_CP053720.1_2924339_2925740_+	pfam17158, MASE4, Membrane-associated sensor, integral membrane domain	NA|188aa|up_4|NZ_CP053720.1_2926968_2927532_-	pfam11726, Inovirus_Gp2, Inovirus Gp2	NA|608aa|up_3|NZ_CP053720.1_2928741_2930565_-	NA	NA|83aa|up_2|NZ_CP053720.1_2930665_2930914_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|522aa|up_1|NZ_CP053720.1_2930929_2932495_+	pfam13148, DUF3987, Protein of unknown function (DUF3987)	NA|403aa|up_0|NZ_CP053720.1_2932718_2933927_-	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain	NA|759aa|down_0|NZ_CP053720.1_2934560_2936837_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP053720.1_2936867_2937188_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP053720.1_2937510_2937735_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP053720.1_2937807_2939754_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP053720.1_2939750_2940866_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP053720.1_2941016_2941973_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP053720.1_2941969_2943628_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP053720.1_2944053_2944749_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP053720.1_2945243_2946143_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP053720.1_2946286_2947939_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	8	3054271-3054415	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|NZ_CP053720.1_3042169_3043159_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP053720.1_3043555_3044464_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP053720.1_3044655_3046677_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP053720.1_3047255_3047933_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP053720.1_3047925_3048681_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP053720.1_3048667_3049822_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP053720.1_3049818_3050859_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP053720.1_3050945_3052235_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP053720.1_3052293_3052770_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP053720.1_3052921_3054205_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP053720.1_3054438_3056700_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP053720.1_3056882_3058316_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP053720.1_3058391_3059444_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP053720.1_3059627_3060581_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP053720.1_3060621_3061617_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP053720.1_3061771_3062590_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP053720.1_3062590_3063649_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP053720.1_3063651_3064341_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP053720.1_3064340_3065114_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP053720.1_3065280_3065430_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	9	3298378-3298474	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP053720.1_3289396_3290089_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP053720.1_3290308_3290851_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP053720.1_3292098_3292965_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP053720.1_3292966_3293179_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP053720.1_3293286_3293808_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP053720.1_3293843_3295229_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP053720.1_3295402_3295897_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP053720.1_3295899_3296622_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP053720.1_3296739_3297249_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP053720.1_3297245_3298313_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP053720.1_3298507_3299401_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP053720.1_3299397_3300213_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP053720.1_3300223_3301483_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP053720.1_3301492_3303160_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|243aa|down_4|NZ_CP053720.1_3303353_3304082_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_5|NZ_CP053720.1_3304309_3305455_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_6|NZ_CP053720.1_3305476_3306778_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_7|NZ_CP053720.1_3306834_3308196_-	PRK08044, PRK08044, allantoinase AllB	NA|485aa|down_8|NZ_CP053720.1_3308255_3309710_-	PRK11375, PRK11375, putative allantoin permease	NA|293aa|down_9|NZ_CP053720.1_3310655_3311534_-	PRK15059, PRK15059, 2-hydroxy-3-oxopropionate reductase
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	10	3771214-3771349	4	PILER-CR	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP053720.1_3761922_3762300_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP053720.1_3762306_3763149_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP053720.1_3763226_3763706_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP053720.1_3763897_3765760_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP053720.1_3765752_3766283_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP053720.1_3766390_3767722_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP053720.1_3767778_3768066_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP053720.1_3768062_3769349_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP053720.1_3769399_3770341_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP053720.1_3770355_3771126_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP053720.1_3771598_3773113_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP053720.1_3773143_3774286_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP053720.1_3774414_3775632_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP053720.1_3775705_3777259_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP053720.1_3777367_3778153_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP053720.1_3778158_3778749_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP053720.1_3778957_3779353_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP053720.1_3779614_3782836_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP053720.1_3782853_3784002_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP053720.1_3784457_3785279_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_013201175.1_ASM1320117v1	NZ_CP053720	Escherichia coli strain CP131_Sichuan chromosome, complete genome	11	3778787-3778928	10	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|96aa|up_9|NZ_CP053720.1_3767778_3768066_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP053720.1_3768062_3769349_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP053720.1_3769399_3770341_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP053720.1_3770355_3771126_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP053720.1_3771598_3773113_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP053720.1_3773143_3774286_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP053720.1_3774414_3775632_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP053720.1_3775705_3777259_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP053720.1_3777367_3778153_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP053720.1_3778158_3778749_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP053720.1_3778957_3779353_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP053720.1_3779614_3782836_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP053720.1_3782853_3784002_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP053720.1_3784457_3785279_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP053720.1_3785445_3786360_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP053720.1_3786425_3787376_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP053720.1_3787377_3787827_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP053720.1_3787951_3788446_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP053720.1_3788445_3791262_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP053720.1_3791304_3792246_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_013201175.1_ASM1320117v1	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	1	235776-235933	1	PILER-CR	no			Orphan	CCGTACCCGGTATAGTGGAT	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|156aa|up_9|NZ_CP053721.1_224631_225099_-,NA|259aa|up_8|NZ_CP053721.1_225958_226735_+,NA|114aa|up_7|NZ_CP053721.1_227849_228191_+,NA|88aa|up_6|NZ_CP053721.1_228291_228555_+,NA|235aa|up_5|NZ_CP053721.1_228782_229487_+,NA|172aa|down_0|NZ_CP053721.1_236122_236638_-,NA|59aa|down_2|NZ_CP053721.1_240190_240367_-,NA|386aa|down_4|NZ_CP053721.1_242321_243479_-,NA|274aa|down_6|NZ_CP053721.1_244677_245499_-,NA|67aa|down_8|NZ_CP053721.1_246485_246686_-	NA|156aa|up_9|NZ_CP053721.1_224631_225099_-	NA	NA|259aa|up_8|NZ_CP053721.1_225958_226735_+	NA	NA|114aa|up_7|NZ_CP053721.1_227849_228191_+	NA	NA|88aa|up_6|NZ_CP053721.1_228291_228555_+	NA	NA|235aa|up_5|NZ_CP053721.1_228782_229487_+	NA	NA|795aa|up_4|NZ_CP053721.1_230026_232411_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|201aa|up_3|NZ_CP053721.1_232661_233264_+	pfam13752, DUF4165, Domain of unknown function (DUF4165)	NA|79aa|up_2|NZ_CP053721.1_233275_233512_+	pfam12245, Big_3_2, Bacterial Ig-like domain (group 3)	NA|199aa|up_1|NZ_CP053721.1_233667_234264_+	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|294aa|up_0|NZ_CP053721.1_234655_235537_+	pfam16441, DUF5038, Domain of unknown function (DUF5038)	NA|172aa|down_0|NZ_CP053721.1_236122_236638_-	NA	NA|819aa|down_1|NZ_CP053721.1_237288_239745_-	pfam13750, Big_3_3, Bacterial Ig-like domain (group 3)	NA|59aa|down_2|NZ_CP053721.1_240190_240367_-	NA	NA|559aa|down_3|NZ_CP053721.1_240381_242058_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|386aa|down_4|NZ_CP053721.1_242321_243479_-	NA	NA|275aa|down_5|NZ_CP053721.1_243838_244663_+	TIGR00571, DNA_adenine_methylase, DNA adenine methylase (dam)	NA|274aa|down_6|NZ_CP053721.1_244677_245499_-	NA	NA|236aa|down_7|NZ_CP053721.1_245781_246489_-	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40	NA|67aa|down_8|NZ_CP053721.1_246485_246686_-	NA	NA|359aa|down_9|NZ_CP053721.1_246703_247780_-	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein
