assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	1	1087468-1087554	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTGTAAGGTAAAAGAGGGATACTT	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|NZ_CP029751.1_1087610_1087745_-,NA|432aa|down_1|NZ_CP029751.1_1087896_1089192_+	NA|224aa|up_9|NZ_CP029751.1_1075303_1075975_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP029751.1_1075967_1078157_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP029751.1_1078135_1079620_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP029751.1_1079612_1080641_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP029751.1_1080643_1081210_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP029751.1_1081224_1082703_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP029751.1_1082724_1083972_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP029751.1_1084237_1085044_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP029751.1_1085036_1086437_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP029751.1_1086451_1087027_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP029751.1_1087610_1087745_-	NA	NA|432aa|down_1|NZ_CP029751.1_1087896_1089192_+	NA	NA|391aa|down_2|NZ_CP029751.1_1089616_1090789_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP029751.1_1090842_1091385_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP029751.1_1091538_1091805_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP029751.1_1091807_1093526_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP029751.1_1093760_1093994_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP029751.1_1094191_1095553_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP029751.1_1095549_1096569_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP029751.1_1096701_1097364_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2	1245707-1245799	2	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NZ_CP029751.1_1235581_1236226_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP029751.1_1236232_1236874_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP029751.1_1237254_1237443_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP029751.1_1237885_1238260_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP029751.1_1238274_1239921_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP029751.1_1240110_1242171_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP029751.1_1242373_1242946_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP029751.1_1242950_1243937_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP029751.1_1243929_1244856_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP029751.1_1244848_1245583_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP029751.1_1245888_1246122_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP029751.1_1246237_1246969_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP029751.1_1247115_1250682_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP029751.1_1250681_1251932_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP029751.1_1251918_1252251_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP029751.1_1252276_1253644_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP029751.1_1253985_1254261_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP029751.1_1254448_1254952_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP029751.1_1254951_1255689_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP029751.1_1255791_1256142_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	3	1847634-1847772	3	CRISPRCasFinder	no	csa3	WYL,cas3,DEDDh,DinG,csa3	Type I-A	TCTATGTTGGGGCCCCGCCAACTTGCA	27	1	7	1847717-1847745|1847717-1847745|1847717-1847745|1847717-1847745|1847717-1847745|1847717-1847745|1847717-1847745	NZ_CP029751.1_287841-287813|NZ_CP029751.1_798655-798627|NZ_CP029751.1_1256471-1256443|NZ_CP029751.1_839776-839804|NZ_CP029751.1_854454-854482|NZ_CP029751.1_2016685-2016713|NZ_CP029751.1_2863943-2863971	NA	2	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|40aa|up_9|NZ_CP029751.1_1838256_1838376_-,NA|75aa|down_1|NZ_CP029751.1_1849021_1849246_-,NA|148aa|down_3|NZ_CP029751.1_1850456_1850900_-,NA|101aa|down_6|NZ_CP029751.1_1853241_1853544_+	NA|40aa|up_9|NZ_CP029751.1_1838256_1838376_-	NA	NA|334aa|up_8|NZ_CP029751.1_1838487_1839489_+	COG0506, PutA, Proline dehydrogenase [Amino acid transport and metabolism]	NA|155aa|up_7|NZ_CP029751.1_1839610_1840075_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|394aa|up_6|NZ_CP029751.1_1840087_1841269_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|211aa|up_5|NZ_CP029751.1_1841279_1841912_-	PRK09289, PRK09289, riboflavin synthase	NA|348aa|up_4|NZ_CP029751.1_1841918_1842962_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|501aa|up_3|NZ_CP029751.1_1843442_1844945_-	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|105aa|up_2|NZ_CP029751.1_1845466_1845781_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|431aa|up_1|NZ_CP029751.1_1845780_1847073_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|132aa|up_0|NZ_CP029751.1_1847090_1847486_+	PRK13530, PRK13530, arsenate reductase (thioredoxin)	NA|285aa|down_0|NZ_CP029751.1_1847891_1848746_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|75aa|down_1|NZ_CP029751.1_1849021_1849246_-	NA	NA|148aa|down_2|NZ_CP029751.1_1850026_1850470_+	pfam06338, ComK, ComK protein	NA|148aa|down_3|NZ_CP029751.1_1850456_1850900_-	NA	NA|212aa|down_4|NZ_CP029751.1_1851197_1851833_+	pfam02517, Abi, CAAX protease self-immunity	NA|238aa|down_5|NZ_CP029751.1_1852270_1852984_-	PRK12376, PRK12376, putative translaldolase; Provisional	NA|101aa|down_6|NZ_CP029751.1_1853241_1853544_+	NA	NA|122aa|down_7|NZ_CP029751.1_1853798_1854164_+	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|118aa|down_8|NZ_CP029751.1_1854160_1854514_+	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|278aa|down_9|NZ_CP029751.1_1854763_1855597_-	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	4	2121762-2121841	4	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3	Unclear	GGCCCCACCCCAACTTACATTGT	23	1	7	2121785-2121818|2121785-2121818|2121785-2121818|2121785-2121818|2121785-2121818|2121785-2121818|2121785-2121818	NZ_CP029751.1_975391-975424|NZ_CP029751.1_1168018-1167985|NZ_CP029751.1_889613-889646|NZ_CP029751.1_403015-402982|NZ_CP029751.1_1378820-1378853|NZ_CP029751.1_798593-798560|NZ_CP029751.1_2114627-2114594	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|114aa|up_8|NZ_CP029751.1_2110825_2111167_+,NA|61aa|up_7|NZ_CP029751.1_2111370_2111553_+,NA|209aa|down_1|NZ_CP029751.1_2123860_2124487_-,NA|60aa|down_2|NZ_CP029751.1_2124483_2124663_-,NA|62aa|down_4|NZ_CP029751.1_2127595_2127781_-,NA|114aa|down_6|NZ_CP029751.1_2129667_2130009_-,NA|193aa|down_9|NZ_CP029751.1_2130825_2131404_-	DEDDh|311aa|up_9|NZ_CP029751.1_2109887_2110820_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_8|NZ_CP029751.1_2110825_2111167_+	NA	NA|61aa|up_7|NZ_CP029751.1_2111370_2111553_+	NA	NA|238aa|up_6|NZ_CP029751.1_2111630_2112344_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|346aa|up_5|NZ_CP029751.1_2112534_2113572_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_4|NZ_CP029751.1_2115024_2116041_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_3|NZ_CP029751.1_2116062_2117118_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_2|NZ_CP029751.1_2117553_2118777_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|290aa|up_1|NZ_CP029751.1_2119274_2120144_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|401aa|up_0|NZ_CP029751.1_2120146_2121349_-	PRK09064, PRK09064, 5-aminolevulinate synthase; Validated	NA|436aa|down_0|NZ_CP029751.1_2121981_2123289_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|209aa|down_1|NZ_CP029751.1_2123860_2124487_-	NA	NA|60aa|down_2|NZ_CP029751.1_2124483_2124663_-	NA	NA|312aa|down_3|NZ_CP029751.1_2125796_2126732_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|62aa|down_4|NZ_CP029751.1_2127595_2127781_-	NA	NA|235aa|down_5|NZ_CP029751.1_2128243_2128948_+	PRK13037, PRK13037, superantigen-like protein; Reviewed	NA|114aa|down_6|NZ_CP029751.1_2129667_2130009_-	NA	NA|176aa|down_7|NZ_CP029751.1_2130011_2130539_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_8|NZ_CP029751.1_2130589_2130808_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus	NA|193aa|down_9|NZ_CP029751.1_2130825_2131404_-	NA
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	5	2378949-2379031	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGTCAGCTTCTGTGTTGGGGCCCCGCC	27	1	8	2378976-2379004|2378976-2379004|2378976-2379004|2378976-2379004|2378976-2379004|2378976-2379004|2378976-2379004|2378976-2379004	NZ_CP029751.1_74185-74213|NZ_CP029751.1_2545782-2545810|NZ_CP029751.1_1172122-1172094|NZ_CP029751.1_1656367-1656339|NZ_CP029751.1_2413193-2413165|NZ_CP029751.1_287737-287709|NZ_CP029751.1_568322-568294|NZ_CP029751.1_1172008-1171980	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_8|NZ_CP029751.1_2369484_2369649_+,NA|106aa|up_7|NZ_CP029751.1_2369894_2370212_+,NA|84aa|up_4|NZ_CP029751.1_2375336_2375588_+,NA	NA|303aa|up_9|NZ_CP029751.1_2368443_2369352_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|NZ_CP029751.1_2369484_2369649_+	NA	NA|106aa|up_7|NZ_CP029751.1_2369894_2370212_+	NA	NA|1056aa|up_6|NZ_CP029751.1_2370398_2373566_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_5|NZ_CP029751.1_2373682_2374948_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_4|NZ_CP029751.1_2375336_2375588_+	NA	NA|255aa|up_3|NZ_CP029751.1_2375579_2376344_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_2|NZ_CP029751.1_2376506_2376947_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_1|NZ_CP029751.1_2376939_2378151_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_0|NZ_CP029751.1_2378252_2378603_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|341aa|down_0|NZ_CP029751.1_2379183_2380206_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP029751.1_2380225_2380825_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP029751.1_2380831_2381065_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP029751.1_2381070_2381517_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP029751.1_2381530_2382016_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP029751.1_2382012_2383272_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP029751.1_2383334_2383829_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP029751.1_2383830_2384337_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP029751.1_2384367_2385372_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP029751.1_2385540_2386146_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	6	2413166-2413251	6	CRISPRCasFinder	no	WYL	WYL,cas3,DEDDh,DinG,csa3	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	3	2413196-2413221|2413196-2413221|2413196-2413221	NZ_CP029751.1_845460-845435|NZ_CP029751.1_2015387-2015362|NZ_CP029751.1_287796-287821	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|81aa|up_6|NZ_CP029751.1_2405955_2406198_-,NA|78aa|down_1|NZ_CP029751.1_2414317_2414551_-,NA|110aa|down_8|NZ_CP029751.1_2422630_2422960_+	NA|248aa|up_9|NZ_CP029751.1_2401793_2402537_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|652aa|up_8|NZ_CP029751.1_2402562_2404518_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|270aa|up_7|NZ_CP029751.1_2405128_2405938_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|81aa|up_6|NZ_CP029751.1_2405955_2406198_-	NA	NA|467aa|up_5|NZ_CP029751.1_2406371_2407772_-	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC	NA|361aa|up_4|NZ_CP029751.1_2407866_2408949_-	pfam02317, Octopine_DH, NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain	NA|141aa|up_3|NZ_CP029751.1_2409196_2409619_+	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|up_2|NZ_CP029751.1_2409855_2410347_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|272aa|up_1|NZ_CP029751.1_2410707_2411523_+	cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains	NA|375aa|up_0|NZ_CP029751.1_2411614_2412739_-	PRK06753, PRK06753, hypothetical protein; Provisional	NA|259aa|down_0|NZ_CP029751.1_2413519_2414296_-	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|78aa|down_1|NZ_CP029751.1_2414317_2414551_-	NA	NA|158aa|down_2|NZ_CP029751.1_2414845_2415319_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|985aa|down_3|NZ_CP029751.1_2415318_2418273_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|316aa|down_4|NZ_CP029751.1_2418876_2419824_-	PRK09379, PRK09379, LytR family transcriptional regulator	NA|266aa|down_5|NZ_CP029751.1_2419946_2420744_-	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]	WYL|231aa|down_6|NZ_CP029751.1_2421127_2421820_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|246aa|down_7|NZ_CP029751.1_2421844_2422582_-	pfam02517, Abi, CAAX protease self-immunity	NA|110aa|down_8|NZ_CP029751.1_2422630_2422960_+	NA	NA|291aa|down_9|NZ_CP029751.1_2423404_2424277_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	7	2516873-2516955	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	GCCAGCTTACAATAATGTGAAAGTTGG	27	1	9	2516900-2516928|2516900-2516928|2516900-2516928|2516900-2516928|2516900-2516928|2516900-2516928|2516900-2516928|2516900-2516928|2516900-2516928	NZ_CP029751.1_845460-845432|NZ_CP029751.1_1675928-1675900|NZ_CP029751.1_1172069-1172097|NZ_CP029751.1_1656314-1656342|NZ_CP029751.1_2015387-2015359|NZ_CP029751.1_2162953-2162981|NZ_CP029751.1_2298460-2298432|NZ_CP029751.1_2413140-2413168|NZ_CP029751.1_2545835-2545807	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|61aa|down_1|NZ_CP029751.1_2518047_2518230_-	NA|151aa|up_9|NZ_CP029751.1_2504046_2504499_-	pfam01590, GAF, GAF domain	NA|226aa|up_8|NZ_CP029751.1_2504518_2505196_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|192aa|up_7|NZ_CP029751.1_2505188_2505764_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|520aa|up_6|NZ_CP029751.1_2505756_2507316_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1230aa|up_5|NZ_CP029751.1_2507305_2510995_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|326aa|up_4|NZ_CP029751.1_2511303_2512281_-	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase	NA|105aa|up_3|NZ_CP029751.1_2512271_2512586_-	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain	NA|802aa|up_2|NZ_CP029751.1_2512589_2514995_-	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|256aa|up_1|NZ_CP029751.1_2515022_2515790_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|179aa|up_0|NZ_CP029751.1_2516018_2516555_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|275aa|down_0|NZ_CP029751.1_2517020_2517845_-	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism]	NA|61aa|down_1|NZ_CP029751.1_2518047_2518230_-	NA	NA|156aa|down_2|NZ_CP029751.1_2518316_2518784_-	COG3832, COG3832, Uncharacterized conserved protein [Function unknown]	NA|517aa|down_3|NZ_CP029751.1_2518969_2520520_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|84aa|down_4|NZ_CP029751.1_2521077_2521329_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|200aa|down_5|NZ_CP029751.1_2521600_2522200_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|down_6|NZ_CP029751.1_2522218_2522581_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|down_7|NZ_CP029751.1_2522835_2524086_+	pfam02388, FemAB, FemAB family	NA|244aa|down_8|NZ_CP029751.1_2524182_2524914_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|down_9|NZ_CP029751.1_2524910_2525630_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]
GCF_013187685.1_ASM1318768v1	NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	8	2863877-2863962	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	7	2863907-2863932|2863907-2863932|2863907-2863932|2863907-2863932|2863907-2863932|2863907-2863932|2863907-2863932	NZ_CP029751.1_1172094-1172069|NZ_CP029751.1_1656339-1656314|NZ_CP029751.1_2162978-2162953|NZ_CP029751.1_2413165-2413140|NZ_CP029751.1_1675903-1675928|NZ_CP029751.1_808205-808180|NZ_CP029751.1_2545810-2545835	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|64aa|up_6|NZ_CP029751.1_2859345_2859537_+,NA|166aa|up_5|NZ_CP029751.1_2860143_2860641_-,NA|64aa|up_4|NZ_CP029751.1_2861097_2861289_+,NA	NA|171aa|up_9|NZ_CP029751.1_2855822_2856335_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NZ_CP029751.1_2856624_2857383_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NZ_CP029751.1_2857372_2859253_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NZ_CP029751.1_2859345_2859537_+	NA	NA|166aa|up_5|NZ_CP029751.1_2860143_2860641_-	NA	NA|64aa|up_4|NZ_CP029751.1_2861097_2861289_+	NA	NA|67aa|up_3|NZ_CP029751.1_2861680_2861881_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP029751.1_2862007_2862577_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP029751.1_2862836_2863232_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP029751.1_2863299_2863653_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP029751.1_2864262_2865102_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP029751.1_2865144_2865864_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP029751.1_2865863_2867741_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP029751.1_2867807_2869187_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP029751.1_2869329_2869683_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP029751.1_2869803_2869941_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
