The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	341963	383142	2870155	capsid,integrase,terminase,holin,portal,tail,head,protease	Staphylococcus_phage(82.61%)	70	341853:341870	383640:383657
341853:341870	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264185.1|341963_343169_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.8	2.9e-222
WP_001582614.1|343362_344076_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	99.6	2.5e-128
WP_000705240.1|344155_344338_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_000358214.1|344407_345127_-	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	99.6	3.7e-132
WP_001198673.1|345268_345487_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_001153965.1|345501_345810_+	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
WP_001148572.1|345966_346764_+	phage antirepressor Ant	NA	Q6R854	Staphylococcus_virus	99.6	1.1e-145
WP_000435360.1|346776_347220_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000939495.1|347234_347375_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|347367_347577_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_001148587.1|347633_348383_+	phage antirepressor KilAC domain-containing protein	NA	A0A1W6JPN2	Staphylococcus_phage	99.6	2.0e-136
WP_000435343.1|348395_348656_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001662405.1|348675_348813_+	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	3.7e-17
WP_001294156.1|348889_349129_+	hypothetical protein	NA	A0ZS12	Staphylococcus_virus	100.0	2.9e-33
WP_001025595.1|349455_349782_+	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	100.0	5.4e-54
WP_001037096.1|349778_349997_+	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	98.6	1.5e-31
WP_001124198.1|350026_350290_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000066014.1|350301_350463_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	9.5e-20
WP_000291090.1|350554_350815_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000815402.1|350824_351046_+	DUF2483 family protein	NA	B2ZYV2	Staphylococcus_phage	100.0	3.2e-34
WP_000134097.1|351038_351827_+	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000704705.1|351855_352407_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_001199419.1|352419_353085_+	hypothetical protein	NA	Q4ZAZ0	Staphylococcus_virus	99.5	3.1e-125
WP_000240901.1|353084_353864_+	AP2 domain-containing protein	NA	A0A2H4J5K3	uncultured_Caudovirales_phage	46.1	7.3e-49
WP_000504982.1|353835_354639_+	phage replisome organizer N-terminal domain-containing protein	NA	A0A1X9H0K3	Staphylococcus_phage	100.0	7.9e-115
WP_000803047.1|354648_355422_+	ATP-binding protein	NA	A7TWN3	Staphylococcus_phage	99.2	2.5e-142
WP_000237153.1|355415_355577_+	hypothetical protein	NA	D2JGK6	Staphylococcus_phage	100.0	4.5e-22
WP_001123688.1|355589_355811_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000049800.1|355820_356225_+	DUF1064 domain-containing protein	NA	A0A0H3U2R9	Staphylococcus_phage	94.0	1.1e-67
WP_001187243.1|356229_356415_+	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000101252.1|356415_356721_+	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_000029393.1|356848_357208_+	hypothetical protein	NA	B2ZYW3	Staphylococcus_phage	97.5	8.0e-59
WP_001126838.1|357208_357457_+	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	98.8	7.2e-43
WP_001105610.1|357471_357837_+	hypothetical protein	NA	A7YGS3	Staphylococcus_virus	94.2	2.4e-58
WP_001065129.1|357829_358078_+	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	96.3	5.9e-37
WP_000185680.1|358070_358607_+	dUTP diphosphatase	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_001282074.1|358643_358889_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195787.1|358885_359122_+	DUF1381 domain-containing protein	NA	M1T303	Staphylococcus_phage	96.2	9.0e-35
WP_000483477.1|359146_359383_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_001662395.1|359372_359762_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.4	5.2e-64
WP_000595266.1|359758_359908_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	98.0	1.8e-17
WP_001005262.1|360066_360717_+	hypothetical protein	NA	D2JLD8	Staphylococcus_phage	100.0	8.9e-117
WP_001794311.1|360716_360917_+	DUF1514 family protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000282756.1|360939_361401_+	hypothetical protein	NA	R9QT84	Staphylococcus_phage	99.3	2.5e-73
WP_031766053.1|361508_361916_+	RinA family phage transcriptional regulator	NA	G4KNP7	Staphylococcus_phage	97.8	2.9e-73
WP_000988330.1|362147_362447_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
WP_000402904.1|362577_362922_+	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000625087.1|362918_364580_+|terminase	terminase large subunit	terminase	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
WP_000025276.1|364595_365768_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	98.5	1.3e-214
WP_000642730.1|365751_366489_+|protease	Clp protease ClpP	protease	Q6R878	Staphylococcus_virus	100.0	1.0e-129
WP_000154567.1|366511_367657_+|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	100.0	1.9e-215
WP_000238239.1|367676_367961_+	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	98.9	3.0e-45
WP_000150936.1|367950_368235_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|368218_368581_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114341.1|368577_368982_+	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000565498.1|368978_369386_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268736.1|369386_370031_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_071621395.1|370072_370297_+	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|370346_370697_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001789580.1|370723_370885_+	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_115287576.1|370941_375471_+|tail	phage tail tape measure protein	tail	A0A1W6JPL0	Staphylococcus_phage	91.0	0.0e+00
WP_000567408.1|375467_376952_+|tail	phage tail family protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_000582186.1|376967_380753_+	hypothetical protein	NA	C8CH32	Staphylococcus_phage	99.7	0.0e+00
WP_001153681.1|380742_380895_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040254.1|380941_381229_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	98.9	4.9e-43
WP_000539688.1|381286_381583_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|381732_381909_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|381961_382069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|382120_382375_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|382386_383142_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
383640:383657	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	776820	784638	2870155		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|776820_777876_-	two-component system sensor histidine kinase SaeS	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|777875_778562_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|778536_779010_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|779349_779790_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637683.1|780069_780654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|780752_781466_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|781469_781889_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|781890_782559_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604519.1|782909_783503_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	5.8e-38
WP_001217809.1|783486_784638_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 3
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	796609	811266	2870155		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663031.1|796609_797668_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197262.1|797962_798505_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429016.1|799170_800088_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000193751.1|800369_801875_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|802214_802715_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068492.1|802758_803601_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692523.1|804401_804800_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.7	4.3e-53
WP_000855505.1|804762_806868_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|806985_807957_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_014532584.1|808399_808519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|808593_809565_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245570.1|809551_810508_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	7.2e-06
WP_000616872.1|810504_811266_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
>prophage 4
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	890832	909287	2870155	coat	Staphylococcus_phage(71.43%)	28	NA	NA
WP_000571213.1|890832_891858_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
WP_000520232.1|891850_892546_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732333.1|892563_893385_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000733775.1|894836_895565_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_001033315.1|895588_896317_-	staphylococcal enterotoxin type Q	NA	A0EX09	Staphylococcus_phage	35.4	3.9e-28
WP_001228759.1|896386_896818_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|896834_897293_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|897304_897637_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_000243851.1|897828_898092_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
WP_000091731.1|898084_898357_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_115287566.1|898368_898515_+	pathogenicity island protein	NA	NA	NA	NA	NA
WP_001058497.1|898507_898720_+	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	72.1	2.4e-18
WP_001038252.1|898721_899081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001103942.1|899081_899402_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002731.1|899465_900335_+	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	7.7e-156
WP_001806477.1|900422_901820_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	94.7	1.0e-255
WP_001039165.1|902098_902461_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.8	4.6e-62
WP_001804819.1|902462_902726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001019290.1|902727_903369_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	3.2e-111
WP_001190615.1|903818_904160_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846280.1|904171_904750_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_000448769.1|904767_904986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|905036_905564_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358778.1|905566_905908_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000840480.1|906750_907260_+	DUF4065 domain-containing protein	NA	D7RWK7	Brochothrix_phage	37.4	8.5e-22
WP_115287564.1|907252_907861_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000812237.1|908065_908293_+	hypothetical protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	47.4	1.9e-13
WP_001035611.1|908735_909287_-	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	65.8	6.5e-60
>prophage 5
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	1072737	1081210	2870155		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861571.1|1072737_1073220_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	43.3	5.8e-20
WP_001010395.1|1073206_1074331_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_115287562.1|1074334_1075039_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	40.8	8.9e-46
WP_000848350.1|1075038_1075302_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666796.1|1075303_1075975_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032754.1|1075967_1078157_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000483713.1|1078135_1079620_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030808.1|1079612_1080641_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	3.8e-61
WP_000238676.1|1080643_1081210_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	1.4e-28
>prophage 6
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	1613301	1621613	2870155	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213904.1|1613301_1614087_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.9	1.8e-18
WP_000924213.1|1614212_1615103_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062185.1|1615112_1616459_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	3.1e-55
WP_000683924.1|1616572_1617673_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	1.0e-08
WP_000624588.1|1617675_1618353_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1618483_1619590_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217242.1|1619813_1621613_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.6e-54
>prophage 7
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	1691100	1700143	2870155	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364543.1|1691100_1691619_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_000594978.1|1691640_1693914_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749796.1|1694116_1696396_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1696670_1696931_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1696949_1698089_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1698111_1699137_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005764.1|1699138_1700143_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 8
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	1834820	1900067	2870155	protease,transposase	Staphylococcus_phage(93.02%)	66	NA	NA
WP_000526539.1|1834820_1835774_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764427.1|1835770_1836334_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	9.2e-102
WP_000757543.1|1836453_1836855_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266091.1|1837426_1838254_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1838256_1838376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196353.1|1838487_1839489_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	5.9e-184
WP_001008551.1|1839610_1840075_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159035.1|1840087_1841269_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_000493886.1|1841279_1841912_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000077341.1|1841918_1842962_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	9.1e-196
WP_001261670.1|1843442_1844945_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221182.1|1845466_1845781_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	3.7e-52
WP_000989112.1|1845780_1847073_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.7	8.8e-225
WP_000163237.1|1847090_1847486_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	97.7	7.7e-71
WP_001032833.1|1847891_1848746_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1849021_1849246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153737.1|1850026_1850470_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030467.1|1850456_1850900_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_025174708.1|1851197_1851833_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096498.1|1852270_1852984_-	transaldolase	NA	M1PR54	Cyanophage	34.8	2.7e-18
WP_000091447.1|1853241_1853544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200551.1|1853798_1854164_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	96.7	2.0e-57
WP_000623480.1|1854160_1854514_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	2.6e-17
WP_000453314.1|1854763_1855597_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366164.1|1855808_1856717_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	3.7e-137
WP_000933822.1|1856841_1858035_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109905.1|1858405_1859998_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_078056470.1|1860293_1861040_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.0	1.6e-141
WP_000672006.1|1861044_1861518_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	1.4e-82
WP_000718107.1|1861583_1861841_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778543.1|1861837_1862839_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	1.3e-183
WP_000348380.1|1862843_1864322_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	4.5e-281
WP_072491906.1|1864480_1864936_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	96.6	7.5e-78
WP_078064113.1|1865237_1865888_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	89.4	7.0e-53
WP_000070665.1|1865968_1866964_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.0	6.0e-72
WP_000669030.1|1867039_1867666_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	73.6	2.4e-74
WP_000627546.1|1867706_1868048_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	3.0e-55
WP_000414210.1|1868148_1868721_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000809743.1|1869053_1869239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1869240_1869417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000240176.1|1870127_1870364_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	62.8	1.4e-16
WP_154289786.1|1870821_1870977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001037040.1|1871532_1871976_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_115287556.1|1871975_1872419_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_103204918.1|1872738_1873188_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_115287555.1|1873824_1875045_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.9	9.7e-48
WP_115287554.1|1875037_1876594_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.3	1.0e-283
WP_001038861.1|1877801_1878521_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	91.2	3.3e-120
WP_001039440.1|1878578_1879301_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	96.7	5.6e-128
WP_001039318.1|1879425_1880133_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	4.8e-124
WP_001092771.1|1881097_1881661_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	57.7	2.1e-45
WP_000550246.1|1882451_1882925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543850.1|1882929_1883721_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782470.1|1884089_1885073_-	leukocidin/hemolysin toxin family protein	NA	A0A2H4PQH7	Staphylococcus_phage	98.5	5.8e-184
WP_000878798.1|1885074_1885995_-	bi-component leukocidin LukED subunit E	NA	A0A2H4PQI5	Staphylococcus_phage	98.4	4.0e-171
WP_000206351.1|1887382_1888171_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.4	2.4e-140
WP_000132893.1|1890631_1891186_-	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000167552.1|1891505_1892906_-	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000162881.1|1892929_1893853_-	ferrochelatase	NA	NA	NA	NA	NA
WP_000233540.1|1893910_1894948_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000737980.1|1895209_1895713_+	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_001245760.1|1895836_1897060_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000216881.1|1897052_1897793_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	9.1e-25
WP_000004981.1|1897926_1898349_+	HIT family protein	NA	NA	NA	NA	NA
WP_000648116.1|1898489_1898855_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001667277.1|1899575_1900067_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	45.9	4.3e-31
>prophage 9
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	1915323	1957786	2870155	plate,capsid,holin,terminase,integrase,portal,tail,head	Staphylococcus_phage(85.51%)	69	1946261:1946276	1965714:1965729
WP_000141153.1|1915323_1915920_-	ImmA/IrrE family metallo-endopeptidase	NA	Q854W5	Mycobacterium_virus	30.6	1.0e-05
WP_001286805.1|1916589_1916775_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	100.0	2.7e-26
WP_000139423.1|1916776_1916887_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1916957_1917110_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_031864827.1|1917351_1918797_-	SH3 domain-containing protein	NA	A0EWV1	Staphylococcus_virus	99.8	2.4e-295
WP_000354121.1|1918777_1919215_-|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	98.6	2.0e-72
WP_000389017.1|1919270_1919666_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	99.2	2.3e-67
WP_000276667.1|1919670_1920909_-|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.5	5.9e-210
WP_000524052.1|1920921_1922796_-	glucosaminidase domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	98.1	0.0e+00
WP_000466784.1|1922932_1923232_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_015990323.1|1923272_1923446_-	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_000705916.1|1923455_1923833_-	DUF2977 domain-containing protein	NA	A0A2H4PQW4	Staphylococcus_phage	99.2	2.0e-60
WP_000259609.1|1923832_1925656_-|plate	BppU family phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	97.4	5.9e-291
WP_001122001.1|1927566_1929453_-|tail	phage tail protein	tail	Q4ZBQ3	Staphylococcus_phage	100.0	0.0e+00
WP_000560183.1|1929463_1930405_-|tail	phage tail family protein	tail	Q4ZBQ4	Staphylococcus_phage	99.0	1.1e-179
WP_000379452.1|1930419_1933305_-	hypothetical protein	NA	A0A0E3T8J3	Staphylococcus_phage	99.6	0.0e+00
WP_000880588.1|1933308_1933593_-	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	98.9	1.5e-44
WP_000134337.1|1933637_1934144_-	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000057582.1|1934210_1934768_-|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000270191.1|1934768_1935194_-	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	98.6	6.7e-73
WP_001151325.1|1935206_1935614_-	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	99.3	7.6e-74
WP_000483041.1|1935600_1935936_-|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_000177351.1|1935947_1936298_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000002931.1|1936303_1936447_-	hypothetical protein	NA	A0A0E3XC49	Staphylococcus_phage	100.0	4.6e-18
WP_000235168.1|1936458_1937373_-|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_001019220.1|1937389_1937974_-	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	99.5	2.8e-77
WP_000346033.1|1938076_1938283_-	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_000184131.1|1938284_1939238_-|head	phage head morphogenesis protein	head	A0A0N7E0U6	Staphylococcus_phage	99.4	6.6e-177
WP_000177421.1|1939206_1940631_-|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	99.8	1.4e-271
WP_001037577.1|1940627_1941851_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	99.5	6.4e-241
WP_000594088.1|1941843_1942338_-|terminase	terminase small subunit	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_000286968.1|1942690_1943092_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_001652281.1|1943092_1943266_-	transcriptional activator RinB	NA	A0A0H4ISR0	Staphylococcus_phage	98.2	8.3e-22
WP_001072793.1|1943258_1943462_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	97.0	2.0e-30
WP_000141186.1|1943458_1943653_-	hypothetical protein	NA	S4SX95	Staphylococcus_phage	93.8	7.4e-27
WP_000195803.1|1943649_1943856_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000120376.1|1943852_1944098_-	hypothetical protein	NA	Q9B0F1	Staphylococcus_virus	85.2	3.6e-26
WP_000185637.1|1944134_1944644_-	dUTP pyrophosphatase	NA	Q8SDV3	Staphylococcus_phage	99.4	7.3e-90
WP_001065085.1|1944636_1944885_-	DUF1024 family protein	NA	A0A0E3XC66	Staphylococcus_phage	98.8	1.2e-37
WP_000132206.1|1944898_1945141_-	hypothetical protein	NA	M1T302	Staphylococcus_phage	100.0	3.0e-41
WP_000029388.1|1945144_1945501_-	hypothetical protein	NA	M1RZB8	Staphylococcus_phage	100.0	1.4e-60
WP_001187233.1|1945501_1945687_-	DUF3113 family protein	NA	M1SNY0	Staphylococcus_phage	100.0	1.4e-27
WP_000049796.1|1945691_1946096_-	DUF1064 domain-containing protein	NA	C5I647	Staphylococcus_phage	99.3	4.8e-68
WP_001123676.1|1946106_1946328_-	DUF3269 family protein	NA	A0A1W6JQ35	Staphylococcus_phage	98.6	1.1e-34
1946261:1946276	attL	TCATGTTTGATAACCT	NA	NA	NA	NA
WP_000256596.1|1946340_1946499_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	5.8e-22
WP_000803046.1|1946492_1947266_-	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	99.2	5.1e-143
WP_000190253.1|1947275_1948046_-	conserved phage C-terminal domain-containing protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
WP_000414755.1|1948111_1948393_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001081076.1|1948385_1948535_-	hypothetical protein	NA	A7TWN0	Staphylococcus_phage	100.0	2.4e-17
WP_001124447.1|1948531_1949206_-	hypothetical protein	NA	Q4ZD97	Staphylococcus_virus	97.8	9.9e-127
WP_000934782.1|1949219_1949648_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.8	1.7e-63
WP_000139720.1|1949647_1950271_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815401.1|1950263_1950485_-	DUF2483 family protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291090.1|1950494_1950755_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000048126.1|1950846_1951008_-	DUF1270 family protein	NA	A0A2H4PQQ1	Staphylococcus_phage	100.0	3.3e-20
WP_000977381.1|1951000_1951222_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_000122246.1|1951292_1951538_+	hypothetical protein	NA	E9LT77	Staphylococcus_phage	100.0	6.9e-38
WP_001094942.1|1951493_1951709_-	hypothetical protein	NA	E9LT76	Staphylococcus_phage	100.0	2.2e-32
WP_115287553.1|1951724_1952477_-	phage antirepressor KilAC domain-containing protein	NA	A0A1X9H0A0	Staphylococcus_phage	98.8	5.6e-139
WP_000933364.1|1952478_1952664_-	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	98.4	1.7e-25
WP_000394412.1|1953108_1953591_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	98.8	1.2e-81
WP_000438350.1|1953691_1953871_-	hypothetical protein	NA	A0A0H3U490	Staphylococcus_phage	96.6	4.9e-25
WP_001106623.1|1953886_1954141_-	helix-turn-helix transcriptional regulator	NA	B7T095	Staphylococcus_virus	98.8	3.1e-41
WP_000874710.1|1954330_1954969_+	LexA family transcriptional regulator	NA	A0A0E3TAG1	Staphylococcus_phage	100.0	8.8e-117
WP_000705241.1|1955034_1955202_+	hypothetical protein	NA	U5U774	Staphylococcus_phage	100.0	1.7e-24
WP_000446801.1|1955361_1955547_+	hypothetical protein	NA	Q8SDX3	Staphylococcus_phage	100.0	6.6e-25
WP_000391592.1|1955582_1956488_+	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
WP_000143212.1|1956424_1956625_-	excisionase	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
WP_001145725.1|1956736_1957786_+|integrase	site-specific integrase	integrase	A0A0F6N3M4	Staphylococcus_phage	100.0	9.1e-204
1965714:1965729	attR	TCATGTTTGATAACCT	NA	NA	NA	NA
>prophage 10
NZ_CP029751	Staphylococcus aureus strain Smith chromosome, complete genome	2870155	2042450	2142438	2870155	capsid,holin,integrase,coat,portal,tail,head,protease	Staphylococcus_phage(85.56%)	128	2121822:2121845	2145553:2145576
WP_000827734.1|2042450_2043617_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434532.1|2043647_2043971_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|2044263_2044437_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2044417_2045020_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2045289_2046111_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284422.1|2046103_2047573_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000897639.1|2047756_2048833_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2048852_2049647_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_042906432.1|2049718_2049826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323165.1|2049836_2051399_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275712.1|2051604_2052702_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.5e-47
WP_000149686.1|2053074_2053635_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2053687_2054617_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001806619.1|2054719_2054938_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021226.1|2055034_2056414_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2056533_2057562_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2057832_2058234_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2058290_2058464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188076.1|2058914_2059955_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713073.1|2060011_2060854_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033967.1|2060850_2061408_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2061467_2061992_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2062112_2062676_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221656.1|2062741_2063482_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763049.1|2063481_2064354_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.4e-27
WP_000645734.1|2064350_2065031_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991298.1|2065031_2065928_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2065924_2066305_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|2066562_2066739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2066980_2067079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068532.1|2067278_2068565_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000669713.1|2068834_2070244_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2071201_2071381_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|2071691_2071952_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2072004_2072355_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727645.1|2073037_2073487_+	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000920038.1|2074516_2075008_-	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_000861038.1|2075198_2075954_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2075965_2076220_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_031762631.1|2076271_2076379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072357969.1|2076431_2076608_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
WP_000340977.1|2076750_2077125_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_115287551.1|2077180_2077468_-	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	95.8	3.2e-42
WP_001153681.1|2077514_2077667_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582186.1|2077656_2081442_-	hypothetical protein	NA	C8CH32	Staphylococcus_phage	99.7	0.0e+00
WP_000567390.1|2081457_2082942_-|tail	phage tail family protein	tail	A0A068A242	Staphylococcus_phage	100.0	1.5e-297
WP_115287550.1|2082938_2087483_-|tail	phage tail tape measure protein	tail	A0A075M036	Staphylococcus_phage	88.5	0.0e+00
WP_001789580.1|2087539_2087701_-	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_001096355.1|2087727_2088078_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|2088127_2088352_-	Ig-like domain-containing protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268736.1|2088393_2089038_-|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_000565498.1|2089038_2089446_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114341.1|2089442_2089847_-	HK97 gp10 family phage protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000755150.1|2089843_2090206_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|2090189_2090474_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238239.1|2090463_2090748_-	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	98.9	3.0e-45
WP_000154567.1|2090767_2091913_-|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	100.0	1.9e-215
WP_000642730.1|2091935_2092673_-|protease	Clp protease ClpP	protease	Q6R878	Staphylococcus_virus	100.0	1.0e-129
WP_000025276.1|2092656_2093829_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	98.5	1.3e-214
WP_000402904.1|2095501_2095846_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988332.1|2095976_2096276_-	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
WP_000590122.1|2096507_2096924_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265041.1|2096951_2097152_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_001806376.1|2097151_2097301_-	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	93.9	2.4e-17
WP_001125015.1|2097303_2097504_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195766.1|2097478_2097664_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	96.8	1.9e-24
WP_000185675.1|2097700_2098237_-	dUTP diphosphatase	NA	M1SNY5	Staphylococcus_phage	98.3	7.9e-95
WP_001152004.1|2098229_2098445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001065114.1|2098444_2098687_-	DUF1024 family protein	NA	A0A2I6PDB2	Staphylococcus_phage	97.5	5.4e-35
WP_001126842.1|2098700_2098949_-	hypothetical protein	NA	S4V683	Staphylococcus_phage	95.1	4.0e-41
WP_000101278.1|2098949_2099321_-	hypothetical protein	NA	A7TWA7	Staphylococcus_phage	91.9	3.7e-51
WP_000401971.1|2099333_2099738_-	RusA family crossover junction endodeoxyribonuclease	NA	O80087	Staphylococcus_phage	99.3	1.4e-72
WP_000338528.1|2099746_2099965_-	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_047214707.1|2100863_2101334_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	100.0	8.0e-83
WP_072528355.1|2101334_2101952_-	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	99.4	2.7e-86
WP_000138475.1|2102032_2102953_-	recombinase RecT	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_001806401.1|2102954_2104910_-	AAA family ATPase	NA	I1W619	Staphylococcus_phage	97.8	0.0e+00
WP_001205732.1|2104906_2105170_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291506.1|2105178_2105439_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	96.5	1.9e-41
WP_000165371.1|2105443_2105746_-	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000048131.1|2105840_2106002_-	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	98.1	5.6e-20
WP_001806402.1|2105998_2106322_-	DUF771 domain-containing protein	NA	A0A1P8L6F3	Staphylococcus_phage	99.1	1.8e-57
WP_000801108.1|2106380_2106608_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_000389906.1|2106609_2106801_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_000768245.1|2106850_2107207_+	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148859.1|2107201_2107396_-	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_001148605.1|2107411_2108164_-	phage antirepressor KilAC domain-containing protein	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|2108214_2108544_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025404.1|2108532_2108748_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2108763_2109027_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001031454.1|2109158_2109872_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759683.1|2109887_2110820_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	99.7	2.2e-172
WP_000591749.1|2110825_2111167_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705240.1|2111370_2111553_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001549185.1|2111630_2112344_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857173.1|2112534_2113572_+|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	99.4	1.9e-177
WP_000595393.1|2115024_2116041_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.6	3.0e-26
WP_115287578.1|2116062_2117118_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	1.9e-36
WP_000206649.1|2117553_2118777_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001108473.1|2119274_2120144_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000278573.1|2120146_2121349_-	5-aminolevulinate synthase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.9	4.9e-36
2121822:2121845	attL	CCCACCCCAACTTGCATTGTCTGT	NA	NA	NA	NA
WP_001045081.1|2121981_2123289_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000216892.1|2123860_2124487_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	45.0	4.8e-43
WP_000201395.1|2124483_2124663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001239268.1|2125796_2126732_+	TDT family transporter	NA	NA	NA	NA	NA
WP_171994849.1|2127595_2127781_-	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	46.8	4.3e-08
WP_001035598.1|2128243_2128948_+	toxic shock syndrome toxin TSST-1	NA	NA	NA	NA	NA
WP_000358778.1|2129667_2130009_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_000771368.1|2130011_2130539_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000448769.1|2130589_2130808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000846280.1|2130825_2131404_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	4.8e-29
WP_001190615.1|2131415_2131757_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_001019290.1|2132206_2132848_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	3.2e-111
WP_001804819.1|2132849_2133113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001039165.1|2133114_2133477_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.8	4.6e-62
WP_001806477.1|2133755_2135153_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	94.7	1.0e-255
WP_001002731.1|2135240_2136110_-	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	7.7e-156
WP_001103942.1|2136173_2136494_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001038252.1|2136494_2136854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001058497.1|2136855_2137068_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	72.1	2.4e-18
WP_000784875.1|2137060_2137207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000481973.1|2137203_2137521_-	helix-turn-helix domain-containing protein	NA	A0A1W6JQE0	Staphylococcus_phage	96.2	1.3e-49
WP_000595328.1|2137534_2138176_-	phage repressor protein	NA	A0A2H4JB17	uncultured_Caudovirales_phage	84.0	1.0e-96
WP_000448765.1|2138179_2138392_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JB11	uncultured_Caudovirales_phage	44.4	3.0e-05
WP_001070980.1|2138545_2139208_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000024833.1|2139220_2140393_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1W6JQD3	Staphylococcus_phage	97.9	2.3e-219
WP_000240657.1|2140461_2142078_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.5	1.3e-156
WP_000917289.1|2142153_2142438_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
2145553:2145576	attR	CCCACCCCAACTTGCATTGTCTGT	NA	NA	NA	NA
>prophage 1
NZ_CP029750	Staphylococcus aureus strain Smith plasmid pSS41, complete sequence	41874	19572	28483	41874	transposase	Staphylococcus_phage(57.14%)	10	NA	NA
WP_000277738.1|19572_21219_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000378396.1|21581_23762_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|23754_24120_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|24357_24735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|24829_25504_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|25538_25751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633163.1|26070_26406_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000120605.1|26466_26781_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_171994842.1|26777_28070_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.9	1.0e-188
WP_111131926.1|28087_28483_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	85.5	2.5e-61
