The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053656	Bacillus cereus strain CTMA_1571 chromosome, complete genome	5177771	181446	189395	5177771		uncultured_virus(33.33%)	6	NA	NA
WP_000917306.1|181446_181731_+	co-chaperone GroES	NA	A0A221S3C8	uncultured_virus	53.8	1.2e-20
WP_168898403.1|181769_183404_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	58.2	2.6e-157
WP_162837124.1|183808_185350_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	31.2	3.4e-21
WP_000833093.1|185734_187060_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	29.5	5.4e-44
WP_000929883.1|187204_187906_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.9	5.6e-40
WP_070172022.1|187889_189395_+	aminopeptidase AmpS	NA	W8CYF6	Bacillus_phage	29.1	2.7e-31
>prophage 2
NZ_CP053656	Bacillus cereus strain CTMA_1571 chromosome, complete genome	5177771	234424	242801	5177771		Synechococcus_phage(33.33%)	8	NA	NA
WP_000625683.1|234424_235732_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.3	6.4e-21
WP_001170542.1|235820_236540_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	44.3	5.2e-49
WP_000278820.1|236532_236787_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666779.1|236783_237467_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_171855612.1|237450_239670_+	phosphoribosylformylglycinamidine synthase II	NA	A6N228	Microbacterium_phage	41.2	1.7e-162
WP_000879029.1|239654_241070_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	7.3e-55
WP_001262436.1|241176_242217_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	46.4	9.4e-68
WP_000088592.1|242213_242801_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.1	1.2e-27
>prophage 3
NZ_CP053656	Bacillus cereus strain CTMA_1571 chromosome, complete genome	5177771	1746306	1754983	5177771		Bacillus_phage(71.43%)	8	NA	NA
WP_000755546.1|1746306_1747569_+	C40 family peptidase	NA	A0A1V0DZX6	Clostridioides_phage	32.0	6.8e-12
WP_001194297.1|1747667_1748432_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_171855895.1|1748672_1750433_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	95.9	2.6e-267
WP_171856546.1|1750494_1751199_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	93.6	5.0e-121
WP_171855896.1|1751195_1752257_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	87.5	1.1e-167
WP_000818985.1|1752436_1753156_+	3-ketoacyl-ACP reductase	NA	W8CYX9	Bacillus_phage	100.0	5.9e-61
WP_142952236.1|1753305_1753977_+	class I SAM-dependent methyltransferase	NA	W8CYT3	Bacillus_phage	86.9	5.0e-62
WP_001258491.1|1754110_1754983_+	aminoglycoside 6-adenylyltransferase	NA	A0A1X9I6F2	Streptococcus_phage	45.9	1.9e-66
>prophage 4
NZ_CP053656	Bacillus cereus strain CTMA_1571 chromosome, complete genome	5177771	2332080	2393033	5177771	integrase,terminase,tail,capsid,protease,tRNA,head,portal	Bacillus_phage(70.73%)	71	2340945:2340961	2376793:2376809
WP_078985317.1|2332080_2333634_+|tRNA	lysine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_001128411.1|2333694_2334123_-	cell wall hydrolase	NA	NA	NA	NA	NA
WP_086419876.1|2334268_2335180_+	acetamidase/formamidase family protein	NA	NA	NA	NA	NA
WP_000238986.1|2335309_2336017_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000620168.1|2336013_2336997_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_086419875.1|2337299_2337926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033681190.1|2338469_2340098_+	ABC-F type ribosomal protection protein	NA	A0A1B0RXA0	Streptococcus_phage	29.8	4.2e-54
WP_086419874.1|2340107_2340701_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
2340945:2340961	attL	TACAAATGAATGACTTT	NA	NA	NA	NA
WP_171856015.1|2341085_2341622_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000404286.1|2341935_2342706_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.9	4.3e-33
WP_001990714.1|2342680_2344606_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002157191.1|2344673_2345345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001165499.1|2345421_2345763_-	DUF3914 domain-containing protein	NA	NA	NA	NA	NA
WP_171856016.1|2346015_2347257_+	lipase	NA	NA	NA	NA	NA
WP_171856017.1|2347344_2348388_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_171856018.1|2348509_2349958_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_086419906.1|2349962_2350877_+	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_171856019.1|2351178_2351868_+	thiaminase II	NA	NA	NA	NA	NA
WP_171856020.1|2352888_2354832_-	collagen-like repeat preface domain-containing protein	NA	NA	NA	NA	NA
WP_086419869.1|2355190_2355397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086419868.1|2356201_2356666_-	exosporium protein D	NA	NA	NA	NA	NA
WP_171856021.1|2357246_2357948_+	DUF3962 domain-containing protein	NA	NA	NA	NA	NA
WP_171856022.1|2357986_2359096_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0U3U8Y8	Bacillus_phage	79.4	1.3e-147
WP_171856023.1|2359640_2360792_+	hypothetical protein	NA	A0A1B0T6A5	Bacillus_phage	34.4	1.9e-53
WP_171856024.1|2360829_2360976_+	complement C1q protein	NA	NA	NA	NA	NA
WP_053564396.1|2361295_2361649_-	helix-turn-helix transcriptional regulator	NA	A0A0U3SD25	Bacillus_phage	86.2	2.8e-48
WP_000854271.1|2361846_2362038_+	helix-turn-helix transcriptional regulator	NA	A0A0U3SLC2	Bacillus_phage	85.2	8.3e-23
WP_171856025.1|2362094_2362361_+	helix-turn-helix domain-containing protein	NA	A0A0U3ULL9	Bacillus_phage	91.8	2.4e-36
WP_098229194.1|2362360_2362525_+	hypothetical protein	NA	A0A0U3B230	Bacillus_phage	87.0	1.3e-19
WP_163247614.1|2362554_2362731_+	hypothetical protein	NA	A0A1B1P7U0	Bacillus_phage	86.2	1.7e-22
WP_171856026.1|2362737_2363610_+	DnaD domain protein	NA	A0A1B1P7T6	Bacillus_phage	96.1	6.3e-49
WP_042332689.1|2363578_2364382_+	ATP-binding protein	NA	A0A1B1P7U2	Bacillus_phage	98.9	4.3e-145
WP_171856027.1|2364397_2364592_+	hypothetical protein	NA	A0A0U3K3J8	Bacillus_phage	87.1	4.8e-26
WP_000805161.1|2364616_2364790_+	DUF3954 domain-containing protein	NA	A0A1B1P7U5	Bacillus_phage	98.2	1.2e-25
WP_000811866.1|2364804_2365059_+	hypothetical protein	NA	A0A0U3SU43	Bacillus_phage	94.0	6.5e-39
WP_171856028.1|2365071_2365491_+	hypothetical protein	NA	A0A1B1P8B9	Bacillus_phage	41.6	3.7e-15
WP_171856029.1|2365506_2365989_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	A0A0U4IBD0	Bacillus_phage	47.7	7.5e-20
WP_171856030.1|2366026_2366296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171856031.1|2366282_2366582_-	hypothetical protein	NA	NA	NA	NA	NA
WP_171856032.1|2366682_2366982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139894638.1|2367122_2367500_-	DUF1093 domain-containing protein	NA	A0A0K2CYS5	Paenibacillus_phage	41.5	3.3e-15
WP_171856033.1|2368290_2368527_+	DNA-entry nuclease	NA	Q5YA92	Bacillus_phage	42.6	2.2e-09
WP_171856034.1|2368526_2368892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001141549.1|2369336_2369552_-	spore germination protein	NA	A0A2H4J3A3	uncultured_Caudovirales_phage	78.9	7.7e-25
WP_001145517.1|2369724_2369913_-	hypothetical protein	NA	A0A288WGN0	Bacillus_phage	64.8	1.1e-08
WP_171856035.1|2370019_2370142_+	DUF3983 domain-containing protein	NA	NA	NA	NA	NA
WP_016109818.1|2370258_2370429_+	hypothetical protein	NA	A0A1B1P735	Bacillus_phage	87.5	2.3e-08
WP_099683210.1|2370456_2370939_+	ArpU family transcriptional regulator	NA	H0USV3	Bacillus_phage	83.8	2.0e-73
WP_001012146.1|2370938_2371481_+|integrase	site-specific integrase	integrase	W8CYP1	Bacillus_phage	91.7	2.9e-89
WP_000758862.1|2371788_2372283_+	DUF2716 domain-containing protein	NA	NA	NA	NA	NA
WP_171856036.1|2372560_2373700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_098609097.1|2374117_2374297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171856037.1|2374351_2374573_+	hypothetical protein	NA	A0A1B1P862	Bacillus_phage	77.1	6.3e-22
WP_171856038.1|2374579_2374837_+	hydrolase	NA	NA	NA	NA	NA
WP_171856039.1|2374829_2375165_+	HNH endonuclease	NA	D2XR61	Bacillus_phage	94.6	7.7e-56
WP_033693383.1|2375319_2375655_+	hypothetical protein	NA	A0A1B1P762	Bacillus_phage	31.2	3.0e-07
WP_171856040.1|2375651_2377310_+|terminase	terminase large subunit	terminase	A0A2H4JHE9	uncultured_Caudovirales_phage	79.0	1.1e-256
2376793:2376809	attR	AAAGTCATTCATTTGTA	NA	NA	NA	NA
WP_171856041.1|2377375_2378482_+|portal	phage portal protein	portal	A0A2H4JAJ1	uncultured_Caudovirales_phage	90.1	4.8e-187
WP_171856042.1|2378465_2379242_+|protease	Clp protease ClpP	protease	A0A0A7RWX3	Clostridium_phage	59.0	3.6e-56
WP_143881513.1|2379261_2380425_+|capsid	phage major capsid protein	capsid	A0A2H4JH29	uncultured_Caudovirales_phage	95.1	2.0e-207
WP_171856043.1|2380437_2380731_+	hypothetical protein	NA	D2XR19	Bacillus_phage	90.7	3.5e-44
WP_171856044.1|2380732_2381086_+|head	phage head closure protein	head	A0A2H4JGG7	uncultured_Caudovirales_phage	95.7	6.6e-58
WP_171856045.1|2381078_2381450_+	HK97 gp10 family phage protein	NA	D2XR21	Bacillus_phage	63.6	1.1e-31
WP_171856046.1|2381446_2381779_+	hypothetical protein	NA	A0A2H4JAG4	uncultured_Caudovirales_phage	82.9	1.8e-44
WP_171856047.1|2381779_2382376_+|tail	phage tail protein	tail	A0A2H4JDV4	uncultured_Caudovirales_phage	97.5	2.8e-109
WP_087997081.1|2382382_2382727_+	hypothetical protein	NA	D2XR24	Bacillus_phage	97.4	1.3e-58
WP_171855594.1|2382795_2382945_+	hypothetical protein	NA	Q0H231	Geobacillus_phage	63.3	3.3e-11
WP_171856048.1|2382962_2384426_+	hypothetical protein	NA	D2XR25	Bacillus_phage	99.5	1.9e-215
WP_171856049.1|2384644_2387584_+	hypothetical protein	NA	A0A1B1P764	Bacillus_phage	84.2	1.3e-151
WP_171856050.1|2387625_2389107_+|tail	phage tail family protein	tail	A0A1B1P7W7	Bacillus_phage	79.1	8.0e-238
WP_171856051.1|2389103_2393033_+|tail	phage tail protein	tail	A0A288WFP5	Bacillus_phage	73.4	0.0e+00
>prophage 5
NZ_CP053656	Bacillus cereus strain CTMA_1571 chromosome, complete genome	5177771	2542613	2550559	5177771		Geobacillus_phage(33.33%)	10	NA	NA
WP_171856100.1|2542613_2543981_-	lytic polysaccharide monooxygenase	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	38.6	3.3e-20
WP_000720566.1|2544418_2544937_-	DNA topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	47.9	5.6e-45
WP_171856101.1|2544933_2545863_-	phosphotransferase	NA	NA	NA	NA	NA
WP_001093445.1|2545878_2546274_-	DUF2809 domain-containing protein	NA	NA	NA	NA	NA
WP_000655496.1|2546339_2547047_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	27.0	1.0e-17
WP_171856102.1|2547068_2547422_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA	NA
WP_171856103.1|2547434_2547839_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000714661.1|2548086_2549472_+	S-layer homology domain-containing protein	NA	Q0H255	Geobacillus_phage	60.3	2.1e-78
WP_000820167.1|2549474_2549687_+	DUF3006 domain-containing protein	NA	Q0H256	Geobacillus_phage	54.4	7.3e-12
WP_000540634.1|2549752_2550559_-	N-acetylmuramoyl-L-alanine amidase	NA	D2XR33	Bacillus_phage	69.7	6.5e-109
>prophage 1
NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	500390	288698	296170	500390		Bacillus_phage(90.0%)	11	NA	NA
WP_000570183.1|288698_288938_-	hypothetical protein	NA	A0A0A7AR38	Bacillus_phage	77.2	1.2e-26
WP_000348715.1|288937_289174_-	hemolysin XhlA family protein	NA	A0A2H4J382	uncultured_Caudovirales_phage	85.9	4.6e-15
WP_000184111.1|289289_289622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080545701.1|290097_291093_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A218KCJ1	Bacillus_phage	46.9	6.2e-77
WP_171856672.1|291159_291981_-	M23 family metallopeptidase	NA	A0A218KCJ1	Bacillus_phage	38.5	1.4e-18
WP_000372568.1|292235_293204_-	lysozyme family protein	NA	A0A1W6JSC2	Bacillus_phage	45.5	1.5e-30
WP_000460738.1|293441_293828_-	hypothetical protein	NA	A0A288WG73	Bacillus_phage	70.9	8.9e-48
WP_000510872.1|293931_294831_-	DnaD domain protein	NA	A0A1C8E9B4	Bacillus_phage	63.0	6.2e-76
WP_000527107.1|294917_295154_-	helix-turn-helix transcriptional regulator	NA	W8CYU0	Bacillus_phage	54.5	2.4e-11
WP_000580593.1|295290_295719_+	helix-turn-helix transcriptional regulator	NA	Q786F1	Bacillus_phage	51.4	1.0e-28
WP_000673785.1|295741_296170_+	ImmA/IrrE family metallo-endopeptidase	NA	Q9T201	Bacillus_phage	54.4	2.4e-33
