The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	598432	607327	2824877	integrase	Xylella_phage(50.0%)	11	594494:594506	604624:604636
594494:594506	attL	TAGCCGCTGGCGT	NA	NA	NA	NA
WP_038273275.1|598432_599494_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	58.1	5.4e-103
WP_069636229.1|599506_599743_-	DUF4224 domain-containing protein	NA	A0A2H4JF29	uncultured_Caudovirales_phage	53.6	6.5e-09
WP_038273354.1|599793_600330_-	pilin	NA	NA	NA	NA	NA
WP_114867068.1|600326_601712_-	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	84.1	1.7e-234
WP_114867069.1|601787_602093_+	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_114867070.1|602094_602367_-	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	78.9	4.4e-33
WP_081755417.1|602693_603047_-	DUF2815 family protein	NA	C8CLG2	Xylella_phage	67.8	4.5e-38
WP_038270871.1|603043_604321_-	DUF2800 domain-containing protein	NA	C8CLG3	Xylella_phage	62.0	4.9e-143
WP_038270872.1|604317_604548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152536598.1|605370_605910_+	hypothetical protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	46.9	4.3e-24
604624:604636	attR	TAGCCGCTGGCGT	NA	NA	NA	NA
WP_114867072.1|606208_607327_+	cyclopropane fatty acyl phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	38.6	2.7e-68
>prophage 2
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	739103	748147	2824877	integrase,holin	Xylella_phage(66.67%)	15	738341:738355	751064:751078
738341:738355	attL	TGCACGTTTGGCTGA	NA	NA	NA	NA
WP_038270998.1|739103_740123_-|integrase	tyrosine-type recombinase/integrase	integrase	C8CLF4	Xylella_phage	82.3	2.3e-159
WP_081755423.1|740122_740371_-	DUF4224 domain-containing protein	NA	C8CLF5	Xylella_phage	69.5	6.1e-26
WP_038273354.1|740425_740962_-	pilin	NA	NA	NA	NA	NA
WP_114867068.1|740958_742344_-	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	84.1	1.7e-234
WP_114867078.1|742419_742704_+	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_114867070.1|742705_742978_-	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	78.9	4.4e-33
WP_114867079.1|744131_744830_+	hypothetical protein	NA	C8CLH7	Xylella_phage	68.3	5.0e-81
WP_038273333.1|744890_745169_+	BrnT family toxin	NA	NA	NA	NA	NA
WP_038273331.1|745134_745446_+	BrnA antitoxin family protein	NA	NA	NA	NA	NA
WP_114867080.1|745666_746188_+	lysozyme	NA	V5YSX1	Pseudomonas_phage	50.3	1.7e-30
WP_038272732.1|746180_746507_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_038272730.1|746496_746958_+	hypothetical protein	NA	A0A0S0N8C8	Pseudomonas_phage	33.1	1.2e-09
WP_038272727.1|746959_747175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038272739.1|747185_747923_+	site-specific DNA-methyltransferase	NA	A0A097EWK8	Mycobacterium_phage	52.1	3.8e-63
WP_038272724.1|747922_748147_+	hypothetical protein	NA	C8CLI3	Xylella_phage	71.6	6.1e-25
751064:751078	attR	TGCACGTTTGGCTGA	NA	NA	NA	NA
>prophage 3
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	898463	905594	2824877	plate	Mycoplasma_phage(16.67%)	8	NA	NA
WP_038270680.1|898463_899324_+	sulfate ABC transporter permease subunit CysT	NA	Q6GZ02	Mycoplasma_phage	28.7	7.2e-05
WP_051482278.1|899335_900280_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA	NA
WP_038270717.1|900293_901340_+	sulfate/molybdate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.2	2.1e-27
WP_162814073.1|902026_902623_-	phage late control D family protein	NA	V5YTN9	Pseudomonas_phage	58.9	6.9e-31
WP_038270682.1|903689_904583_-|plate	baseplate J/gp47 family protein	plate	R4JDM0	Burkholderia_phage	49.8	1.2e-71
WP_038270719.1|904582_904921_-	GPW/gp25 family protein	NA	A0A088FV58	Escherichia_phage	57.7	8.1e-29
WP_038270683.1|905012_905291_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_081755408.1|905294_905594_+	HigA family addiction module antidote protein	NA	M9MUN2	Rhodococcus_phage	49.4	1.2e-15
>prophage 4
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	1254458	1261515	2824877	terminase	Xylella_phage(66.67%)	9	NA	NA
WP_160165226.1|1254458_1255175_-	hypothetical protein	NA	C8CLI5	Xylella_phage	49.2	5.2e-41
WP_114867106.1|1255171_1256278_-|terminase	PBSX family phage terminase large subunit	terminase	A0A088F6U9	Sulfitobacter_phage	60.3	1.1e-125
WP_114867107.1|1256274_1256676_-	lysozyme	NA	A0A1V0EFL1	unidentified_phage	59.0	2.8e-28
WP_038273322.1|1256928_1257264_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA	NA
WP_038273324.1|1257260_1257515_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA	NA
WP_114867108.1|1257616_1258315_-	hypothetical protein	NA	C8CLH7	Xylella_phage	66.4	2.9e-81
WP_114867070.1|1259468_1259741_+	VRR-NUC domain-containing protein	NA	C8CLF9	Xylella_phage	78.9	4.4e-33
WP_114867109.1|1259742_1260093_-	DUF1640 domain-containing protein	NA	NA	NA	NA	NA
WP_114867110.1|1260168_1261515_+	DEAD/DEAH box helicase	NA	C8CLF7	Xylella_phage	79.6	3.0e-215
>prophage 5
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	1312583	1319228	2824877	portal	Stenotrophomonas_phage(16.67%)	8	NA	NA
WP_114867113.1|1312583_1313054_+|portal	phage portal protein	portal	B7SYD6	Stenotrophomonas_phage	49.6	2.7e-22
WP_038272147.1|1313280_1313898_+	glycoside hydrolase family 25 protein	NA	A0A1U9WQS3	Geobacillus_phage	32.7	3.0e-21
WP_038272149.1|1314836_1315037_+	hypothetical protein	NA	C8CLH7	Xylella_phage	69.0	8.2e-13
WP_171898051.1|1315452_1315752_+	putative addiction module antidote protein	NA	A4JWV1	Burkholderia_virus	42.5	3.9e-11
WP_038272150.1|1316067_1316436_+	DUF4054 domain-containing protein	NA	B5AX60	Iodobacteriophage	31.4	6.2e-06
WP_038272151.1|1316483_1317050_-	pilin	NA	NA	NA	NA	NA
WP_160199346.1|1317097_1317553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038272154.1|1318715_1319228_+	hypothetical protein	NA	G8CLC0	Synechococcus_phage	37.3	2.1e-12
>prophage 6
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	1322266	1333331	2824877	integrase,protease	Stenotrophomonas_phage(44.44%)	16	1316263:1316278	1332662:1332677
1316263:1316278	attL	GATGCCGCCGCCGCCG	NA	NA	NA	NA
WP_038273097.1|1322266_1323415_+	replication initiation factor domain-containing protein	NA	S0F3F7	Stenotrophomonas_phage	44.9	5.1e-75
WP_038273093.1|1323460_1323754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038273092.1|1323756_1323963_+	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	66.7	3.7e-16
WP_051482398.1|1323971_1324190_+	hypothetical protein	NA	A0A1W6DXZ2	Xanthomonas_phage	51.0	1.1e-05
WP_152536670.1|1324657_1325725_+	hypothetical protein	NA	A0A1W6DXV5	Xanthomonas_phage	52.9	4.5e-49
WP_038273089.1|1325728_1326070_+	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	49.5	7.9e-24
WP_069636227.1|1326069_1327218_+	hypothetical protein	NA	S0F3F8	Stenotrophomonas_phage	59.1	1.4e-128
WP_038271291.1|1327222_1327534_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_038271292.1|1327521_1327794_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_051482318.1|1328135_1329008_+|integrase	site-specific integrase	integrase	Q7Y5X7	Haemophilus_phage	44.3	2.6e-63
WP_051482319.1|1329020_1329413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160165178.1|1329599_1329758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081755441.1|1329754_1330333_-	lysozyme	NA	C8CLH9	Xylella_phage	57.5	2.1e-53
WP_038271294.1|1330348_1330561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038271295.1|1330638_1331013_-	DUF2190 family protein	NA	NA	NA	NA	NA
WP_081755442.1|1331075_1333331_-|protease	Clp protease ClpP	protease	B7SYD7	Stenotrophomonas_phage	43.5	1.1e-81
1332662:1332677	attR	CGGCGGCGGCGGCATC	NA	NA	NA	NA
>prophage 7
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	1463962	1471097	2824877		Stenotrophomonas_phage(42.86%)	10	NA	NA
WP_069636227.1|1463962_1465111_-	hypothetical protein	NA	S0F3F8	Stenotrophomonas_phage	59.1	1.4e-128
WP_038273089.1|1465110_1465452_-	DUF2523 domain-containing protein	NA	A0A1D6ZIU0	Xanthomonas_phage	49.5	7.9e-24
WP_152536670.1|1465455_1466523_-	hypothetical protein	NA	A0A1W6DXV5	Xanthomonas_phage	52.9	4.5e-49
WP_051482398.1|1466990_1467209_-	hypothetical protein	NA	A0A1W6DXZ2	Xanthomonas_phage	51.0	1.1e-05
WP_038273092.1|1467217_1467424_-	hypothetical protein	NA	S0F2M5	Stenotrophomonas_phage	66.7	3.7e-16
WP_038273093.1|1467426_1467720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038273097.1|1467765_1468914_-	replication initiation factor domain-containing protein	NA	S0F3F7	Stenotrophomonas_phage	44.9	5.1e-75
WP_114867130.1|1469344_1469527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152536640.1|1469557_1469818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038271631.1|1470428_1471097_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	36.7	5.3e-24
>prophage 8
NZ_CP053627	Xylella taiwanensis strain PLS229 chromosome, complete genome	2824877	1550261	1558815	2824877	holin	Xylella_phage(28.57%)	11	NA	NA
WP_038272997.1|1550261_1552790_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	36.4	6.0e-68
WP_081755492.1|1553977_1554373_+	hypothetical protein	NA	C8CLH5	Xylella_phage	45.2	7.8e-15
WP_114867133.1|1554564_1555074_+	lysozyme	NA	V5YSX1	Pseudomonas_phage	48.8	1.7e-30
WP_038272608.1|1555066_1555393_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_038272606.1|1555382_1555844_+	hypothetical protein	NA	A0A0S0N8C8	Pseudomonas_phage	32.3	2.0e-09
WP_038272603.1|1555845_1556061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051482374.1|1556065_1556599_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_038272601.1|1556591_1557098_+	hypothetical protein	NA	C8CLJ7	Xylella_phage	71.2	2.6e-23
WP_081755479.1|1557505_1557928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038272599.1|1558137_1558440_+	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	49.5	2.3e-19
WP_038272597.1|1558455_1558815_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	66.1	3.5e-38
