assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013171325.1_ASM1317132v1	NZ_CP053045	Escherichia fergusonii strain HNCF11W chromosome, complete genome	1	989675-990313	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cas1,cas2	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	Type I-E	GAGTTCCCCACGCCAGCGGGGATAAACCG,GAGTTCCCCACGCCAGCGGGGATAAACCG,GAGTTCCCCACGCCAGCGGGGATAAACCG	29,29,29	1	1	990070-990101	NZ_CP053046.1_69907-69938	I-E:I-E:I-E	8,10,10	10	TypeI-E	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	NA,NA|88aa|down_0|NZ_CP053045.1_990377_990641_+	NA|112aa|up_9|NZ_CP053045.1_978978_979314_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_8|NZ_CP053045.1_979384_980176_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_7|NZ_CP053045.1_980403_982041_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_6|NZ_CP053045.1_982128_983427_+	PRK00077, eno, enolase; Provisional	NA|443aa|up_5|NZ_CP053045.1_983481_984810_-	pfam13006, Nterm_IS4, Insertion element 4 transposase N-terminal	NA|291aa|up_4|NZ_CP053045.1_984926_985799_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP053045.1_985804_986953_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|303aa|up_2|NZ_CP053045.1_986967_987876_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP053045.1_987889_988492_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP053045.1_988664_989336_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|88aa|down_0|NZ_CP053045.1_990377_990641_+	NA	NA|121aa|down_1|NZ_CP053045.1_991001_991364_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP053045.1_991682_993482_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP053045.1_993481_995194_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP053045.1_995267_996002_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_5|NZ_CP053045.1_996268_996421_+	pfam01848, HOK_GEF, Hok/gef family	cas3|886aa|down_6|NZ_CP053045.1_996656_999314_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|476aa|down_7|NZ_CP053045.1_999411_1000839_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas1|308aa|down_8|NZ_CP053045.1_1000835_1001759_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|down_9|NZ_CP053045.1_1001755_1002049_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional
GCF_013171325.1_ASM1317132v1	NZ_CP053045	Escherichia fergusonii strain HNCF11W chromosome, complete genome	2	1002146-1003518	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cas1,cas2	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	22,21,7	22	TypeI-E	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	NA|88aa|up_9|NZ_CP053045.1_990377_990641_+,NA	NA|88aa|up_9|NZ_CP053045.1_990377_990641_+	NA	NA|121aa|up_8|NZ_CP053045.1_991001_991364_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP053045.1_991682_993482_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP053045.1_993481_995194_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP053045.1_995267_996002_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP053045.1_996268_996421_+	pfam01848, HOK_GEF, Hok/gef family	cas3|886aa|up_3|NZ_CP053045.1_996656_999314_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|476aa|up_2|NZ_CP053045.1_999411_1000839_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas1|308aa|up_1|NZ_CP053045.1_1000835_1001759_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP053045.1_1001755_1002049_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP053045.1_1003537_1004575_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053045.1_1004826_1005735_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053045.1_1005736_1007164_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053045.1_1007163_1007769_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053045.1_1007818_1008142_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053045.1_1008316_1008628_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053045.1_1008646_1009357_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053045.1_1009356_1009836_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053045.1_1009832_1010882_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053045.1_1010862_1011624_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013171325.1_ASM1317132v1	NZ_CP053045	Escherichia fergusonii strain HNCF11W chromosome, complete genome	3	2063867-2063990	3	CRISPRCasFinder	no	DEDDh	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	NA,NA	NA|249aa|up_9|NZ_CP053045.1_2054093_2054840_+	PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed	NA|424aa|up_8|NZ_CP053045.1_2054814_2056086_+	PRK10948, PRK10948, Fe-S cluster assembly protein SufD	NA|407aa|up_7|NZ_CP053045.1_2056082_2057303_+	PRK09295, PRK09295, cysteine desulfurase SufS	NA|139aa|up_6|NZ_CP053045.1_2057315_2057732_+	PRK09296, PRK09296, cysteine desulfuration protein SufE	NA|334aa|up_5|NZ_CP053045.1_2057880_2058882_+	PRK10190, PRK10190, L,D-transpeptidase; Provisional	NA|79aa|up_4|NZ_CP053045.1_2058935_2059172_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_3|NZ_CP053045.1_2059480_2060893_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_2|NZ_CP053045.1_2061406_2061616_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|537aa|up_1|NZ_CP053045.1_2061654_2063265_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053045.1_2063425_2063731_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|458aa|down_0|NZ_CP053045.1_2064148_2065522_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|216aa|down_1|NZ_CP053045.1_2065739_2066387_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_2|NZ_CP053045.1_2066427_2067576_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|402aa|down_3|NZ_CP053045.1_2067865_2069071_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_4|NZ_CP053045.1_2069184_2070117_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_5|NZ_CP053045.1_2070113_2071139_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_6|NZ_CP053045.1_2071435_2071525_+	PRK14756, small_mem_YnhF, YnhF family membrane protein; Validated	NA|389aa|down_7|NZ_CP053045.1_2071691_2072858_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_8|NZ_CP053045.1_2072903_2073485_-	PRK10543, PRK10543, superoxide dismutase [Fe]	NA|280aa|down_9|NZ_CP053045.1_2073690_2074530_-	pfam00877, NLPC_P60, NlpC/P60 family
GCF_013171325.1_ASM1317132v1	NZ_CP053045	Escherichia fergusonii strain HNCF11W chromosome, complete genome	4	2877740-2877873	4	CRISPRCasFinder	no		cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	Orphan	TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	38	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	NA,NA	NA|368aa|up_9|NZ_CP053045.1_2867215_2868319_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|156aa|up_8|NZ_CP053045.1_2868315_2868783_-	cd03358, LbH_WxcM_N_like, WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain	NA|132aa|up_7|NZ_CP053045.1_2868779_2869175_-	pfam05523, FdtA, WxcM-like, C-terminal	NA|288aa|up_6|NZ_CP053045.1_2869178_2870042_-	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form	NA|362aa|up_5|NZ_CP053045.1_2870041_2871127_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_4|NZ_CP053045.1_2871487_2872381_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|332aa|up_3|NZ_CP053045.1_2872623_2873619_-	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs	NA|465aa|up_2|NZ_CP053045.1_2873776_2875171_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_1|NZ_CP053045.1_2875181_2876402_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_0|NZ_CP053045.1_2876398_2877679_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|down_0|NZ_CP053045.1_2877954_2879433_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|down_1|NZ_CP053045.1_2879434_2880829_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|down_2|NZ_CP053045.1_2880883_2882254_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_3|NZ_CP053045.1_2882446_2883883_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_4|NZ_CP053045.1_2883885_2885109_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_5|NZ_CP053045.1_2885105_2885585_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_6|NZ_CP053045.1_2885587_2886553_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_7|NZ_CP053045.1_2886555_2887677_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_8|NZ_CP053045.1_2887703_2888252_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_9|NZ_CP053045.1_2888267_2889014_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE
GCF_013171325.1_ASM1317132v1	NZ_CP053047	Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-tetX4, complete sequence	1	9831-9950	1	CRISPRCasFinder	no			Orphan	TGAAAGGTGGATGGGTACGCACTGAAAGGTGGATAGGTACGCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,cas8e,cas1,cas2,csa3,DinG,c2c9_V-U4,PD-DExK	NA|386aa|up_9|NZ_CP053047.1_4307_5465_-,NA|182aa|up_8|NZ_CP053047.1_5467_6013_-,NA|91aa|up_7|NZ_CP053047.1_6339_6612_-,NA|50aa|up_6|NZ_CP053047.1_6624_6774_-,NA|110aa|up_5|NZ_CP053047.1_7060_7390_-,NA|72aa|up_4|NZ_CP053047.1_7482_7698_-,NA|82aa|up_3|NZ_CP053047.1_7687_7933_-,NA|108aa|up_2|NZ_CP053047.1_7977_8301_-,NA|149aa|down_1|NZ_CP053047.1_11100_11547_+,NA|118aa|down_2|NZ_CP053047.1_11683_12037_+,NA|98aa|down_4|NZ_CP053047.1_13066_13360_-	NA|386aa|up_9|NZ_CP053047.1_4307_5465_-	NA	NA|182aa|up_8|NZ_CP053047.1_5467_6013_-	NA	NA|91aa|up_7|NZ_CP053047.1_6339_6612_-	NA	NA|50aa|up_6|NZ_CP053047.1_6624_6774_-	NA	NA|110aa|up_5|NZ_CP053047.1_7060_7390_-	NA	NA|72aa|up_4|NZ_CP053047.1_7482_7698_-	NA	NA|82aa|up_3|NZ_CP053047.1_7687_7933_-	NA	NA|108aa|up_2|NZ_CP053047.1_7977_8301_-	NA	NA|94aa|up_1|NZ_CP053047.1_8446_8728_-	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|84aa|up_0|NZ_CP053047.1_8717_8969_-	PRK02854, PRK02854, primosomal protein DnaT	NA|279aa|down_0|NZ_CP053047.1_10224_11061_+	pfam01051, Rep_3, Initiator Replication protein	NA|149aa|down_1|NZ_CP053047.1_11100_11547_+	NA	NA|118aa|down_2|NZ_CP053047.1_11683_12037_+	NA	NA|323aa|down_3|NZ_CP053047.1_12096_13065_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|98aa|down_4|NZ_CP053047.1_13066_13360_-	NA	NA|77aa|down_5|NZ_CP053047.1_13375_13606_-	pfam09274, ParG, ParG	NA|207aa|down_6|NZ_CP053047.1_13657_14278_-	cd02042, ParAB_family, partition proteins ParAB family	NA|213aa|down_7|NZ_CP053047.1_14563_15202_+	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|235aa|down_8|NZ_CP053047.1_15892_16597_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|264aa|down_9|NZ_CP053047.1_17396_18188_+	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional
