assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013171305.1_ASM1317130v1	NZ_CP053042	Proteus cibarius strain HNCF44W chromosome, complete genome	1	2243027-2243100	1	CRISPRCasFinder	no		csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	Orphan	CACGGTGAAGAAGGCGGATGCTG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	NA,NA|53aa|down_3|NZ_CP053042.1_2245679_2245838_-	NA|327aa|up_9|NZ_CP053042.1_2228404_2229385_-	PRK10985, PRK10985, putative hydrolase; Provisional	NA|202aa|up_8|NZ_CP053042.1_2229484_2230090_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|287aa|up_7|NZ_CP053042.1_2230802_2231663_+	PRK11557, PRK11557, MurR/RpiR family transcriptional regulator	NA|515aa|up_6|NZ_CP053042.1_2231812_2233357_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|582aa|up_5|NZ_CP053042.1_2233456_2235202_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|563aa|up_4|NZ_CP053042.1_2235742_2237431_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|645aa|up_3|NZ_CP053042.1_2237762_2239697_-	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional	NA|182aa|up_2|NZ_CP053042.1_2239818_2240364_+	PRK04930, PRK04930, glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional	NA|618aa|up_1|NZ_CP053042.1_2240369_2242223_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|68aa|up_0|NZ_CP053042.1_2242236_2242440_+	COG3529, COG3529, Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]	NA|73aa|down_0|NZ_CP053042.1_2243247_2243466_-	PRK02793, PRK02793, phi X174 lysis protein; Provisional	NA|251aa|down_1|NZ_CP053042.1_2243800_2244553_+	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|294aa|down_2|NZ_CP053042.1_2244651_2245533_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|53aa|down_3|NZ_CP053042.1_2245679_2245838_-	NA	NA|235aa|down_4|NZ_CP053042.1_2246185_2246890_+	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown]	NA|132aa|down_5|NZ_CP053042.1_2246899_2247295_+	PRK00207, PRK00207, sulfurtransferase complex subunit TusD	NA|123aa|down_6|NZ_CP053042.1_2247294_2247663_+	PRK00211, PRK00211, sulfurtransferase complex subunit TusC	NA|98aa|down_7|NZ_CP053042.1_2247694_2247988_+	PRK13510, PRK13510, sulfurtransferase complex subunit TusB	NA|125aa|down_8|NZ_CP053042.1_2248115_2248490_+	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|157aa|down_9|NZ_CP053042.1_2248588_2249059_+	PRK05302, PRK05302, 30S ribosomal protein S7; Validated
GCF_013171305.1_ASM1317130v1	NZ_CP053042	Proteus cibarius strain HNCF44W chromosome, complete genome	2	2880802-2880917	2	CRISPRCasFinder	no		csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	Orphan	ATGGAAACGTCGAAAGCGAGGAATC	25	0	0	NA	NA	NA	2	2	Orphan	csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	NA|125aa|up_7|NZ_CP053042.1_2876459_2876834_-,NA|165aa|up_6|NZ_CP053042.1_2877244_2877739_+,NA|68aa|up_5|NZ_CP053042.1_2877950_2878154_-,NA|153aa|up_2|NZ_CP053042.1_2879491_2879950_+,NA|70aa|up_1|NZ_CP053042.1_2880038_2880248_+,NA|131aa|down_1|NZ_CP053042.1_2882179_2882572_+,NA|83aa|down_7|NZ_CP053042.1_2886968_2887217_+	NA|166aa|up_9|NZ_CP053042.1_2875010_2875508_-	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional	NA|276aa|up_8|NZ_CP053042.1_2875566_2876394_-	pfam10065, DUF2303, Uncharacterized conserved protein (DUF2303)	NA|125aa|up_7|NZ_CP053042.1_2876459_2876834_-	NA	NA|165aa|up_6|NZ_CP053042.1_2877244_2877739_+	NA	NA|68aa|up_5|NZ_CP053042.1_2877950_2878154_-	NA	NA|221aa|up_4|NZ_CP053042.1_2878506_2879169_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|71aa|up_3|NZ_CP053042.1_2879209_2879422_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|153aa|up_2|NZ_CP053042.1_2879491_2879950_+	NA	NA|70aa|up_1|NZ_CP053042.1_2880038_2880248_+	NA	NA|60aa|up_0|NZ_CP053042.1_2880237_2880417_+	pfam13973, DUF4222, Domain of unknown function (DUF4222)	NA|213aa|down_0|NZ_CP053042.1_2881544_2882183_+	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam)	NA|131aa|down_1|NZ_CP053042.1_2882179_2882572_+	NA	NA|57aa|down_2|NZ_CP053042.1_2882571_2882742_+	TIGR03655, hypothetical_protein_VT2-Sap32, restriction alleviation protein, Lar family	NA|268aa|down_3|NZ_CP053042.1_2883205_2884009_+	pfam04383, KilA-N, KilA-N domain	NA|342aa|down_4|NZ_CP053042.1_2884005_2885031_+	pfam06147, DUF968, Protein of unknown function (DUF968)	NA|128aa|down_5|NZ_CP053042.1_2885058_2885442_+	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|389aa|down_6|NZ_CP053042.1_2885682_2886849_+	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|83aa|down_7|NZ_CP053042.1_2886968_2887217_+	NA	NA|130aa|down_8|NZ_CP053042.1_2887545_2887935_+	pfam16931, Phage_holin_8, Putative phage holin	NA|100aa|down_9|NZ_CP053042.1_2887931_2888231_+	pfam05449, Phage_holin_3_7, Putative 3TM holin, Phage_holin_3
GCF_013171305.1_ASM1317130v1	NZ_CP053042	Proteus cibarius strain HNCF44W chromosome, complete genome	3	3166704-3166792	3	CRISPRCasFinder	no		csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	Orphan	TGTTCACTGCCACATAGGCAGCTTAGAAA	29	0	0	NA	NA	I-F	1	1	Orphan	csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	NA,NA	NA|128aa|up_9|NZ_CP053042.1_3154161_3154545_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|115aa|up_8|NZ_CP053042.1_3154954_3155299_-	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486)	NA|135aa|up_7|NZ_CP053042.1_3155755_3156160_+	pfam07007, LprI, Lysozyme inhibitor LprI	NA|235aa|up_6|NZ_CP053042.1_3156283_3156988_-	COG1556, COG1556, Uncharacterized conserved protein [Function unknown]	NA|474aa|up_5|NZ_CP053042.1_3156989_3158411_-	TIGR00273, Uncharacterized_electron_transport_protein_YkgF, iron-sulfur cluster-binding protein	NA|240aa|up_4|NZ_CP053042.1_3158423_3159143_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|509aa|up_3|NZ_CP053042.1_3159262_3160789_-	COG1620, LldP, L-lactate permease [Energy production and conversion]	NA|517aa|up_2|NZ_CP053042.1_3162716_3164267_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|193aa|up_1|NZ_CP053042.1_3164774_3165353_+	cd07067, HP_PGM_like, Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction	NA|296aa|up_0|NZ_CP053042.1_3165443_3166331_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|385aa|down_0|NZ_CP053042.1_3167146_3168301_+	pfam06958, Pyocin_S, S-type Pyocin	NA|179aa|down_1|NZ_CP053042.1_3168319_3168856_+	pfam01024, Colicin, Colicin pore forming domain	NA|114aa|down_2|NZ_CP053042.1_3168877_3169219_-	pfam03526, Microcin, Colicin E1 (microcin) immunity protein	NA|161aa|down_3|NZ_CP053042.1_3170136_3170619_-	PRK05422, smpB, SsrA-binding protein SmpB	NA|145aa|down_4|NZ_CP053042.1_3170775_3171210_+	PRK10724, PRK10724, type II toxin-antitoxin system RatA family toxin	NA|98aa|down_5|NZ_CP053042.1_3171202_3171496_+	PRK01777, PRK01777, RnfH family protein	NA|121aa|down_6|NZ_CP053042.1_3171702_3172065_-	PRK11548, PRK11548, outer membrane protein assembly factor BamE	NA|554aa|down_7|NZ_CP053042.1_3172178_3173840_-	PRK10869, PRK10869, recombination and repair protein; Provisional	NA|300aa|down_8|NZ_CP053042.1_3173927_3174827_-	PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|204aa|down_9|NZ_CP053042.1_3174927_3175539_+	PRK14150, PRK14150, heat shock protein GrpE; Provisional
GCF_013171305.1_ASM1317130v1	NZ_CP053042	Proteus cibarius strain HNCF44W chromosome, complete genome	4	3266684-3266836	4	CRISPRCasFinder	no		csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	Orphan	TGACCTCTTGCATGCCATGCAAGCGCTCTCCCAACTGAGCTATAACCCCA	50	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	NA|194aa|up_7|NZ_CP053042.1_3258614_3259196_+,NA	NA|86aa|up_9|NZ_CP053042.1_3256887_3257145_-	PRK10850, PRK10850, phosphocarrier protein Hpr	NA|318aa|up_8|NZ_CP053042.1_3257476_3258430_-	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|194aa|up_7|NZ_CP053042.1_3258614_3259196_+	NA	NA|257aa|up_6|NZ_CP053042.1_3259309_3260080_-	PRK04949, PRK04949, putative sulfate transport protein CysZ; Validated	NA|343aa|up_5|NZ_CP053042.1_3260303_3261332_+	PRK03427, PRK03427, cell division protein ZipA; Provisional	NA|676aa|up_4|NZ_CP053042.1_3261387_3263415_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|395aa|up_3|NZ_CP053042.1_3263643_3264828_+	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|72aa|up_2|NZ_CP053042.1_3264994_3265210_+	pfam12843, QSregVF_b, Putative quorum-sensing-regulated virulence factor	NA|147aa|up_1|NZ_CP053042.1_3265212_3265653_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|251aa|up_0|NZ_CP053042.1_3265836_3266589_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|473aa|down_0|NZ_CP053042.1_3266992_3268411_-	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed	NA|101aa|down_1|NZ_CP053042.1_3271669_3271972_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|349aa|down_2|NZ_CP053042.1_3272568_3273615_-	cd01142, TroA_e, Periplasmic binding protein TroA_e	NA|710aa|down_3|NZ_CP053042.1_3273627_3275757_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|260aa|down_4|NZ_CP053042.1_3276039_3276819_-	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|193aa|down_5|NZ_CP053042.1_3276815_3277394_-	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|760aa|down_6|NZ_CP053042.1_3277408_3279688_-	PRK15488, PRK15488, thiosulfate reductase PhsA; Provisional	NA|268aa|down_7|NZ_CP053042.1_3280561_3281365_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|259aa|down_8|NZ_CP053042.1_3281469_3282246_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|68aa|down_9|NZ_CP053042.1_3282911_3283115_+	pfam10547, P22_AR_N, P22_AR N-terminal domain
GCF_013171305.1_ASM1317130v1	NZ_CP053043	Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence	1	11288-11760	1	CRISPRCasFinder	no			Orphan	AAAGGTCGTCGTTGGTGCAGTAT	23	0	0	NA	NA	NA	7	7	Orphan	csa3,DEDDh,RT,DinG,cas3,TnsE_C,WYL	NA|280aa|up_9|NZ_CP053043.1_3253_4093_-,NA|187aa|up_8|NZ_CP053043.1_4092_4653_-,NA|185aa|up_7|NZ_CP053043.1_4649_5204_-,NA|153aa|up_5|NZ_CP053043.1_6228_6687_+,NA|140aa|up_4|NZ_CP053043.1_7022_7442_-,NA|164aa|up_0|NZ_CP053043.1_10229_10721_+,NA|76aa|down_1|NZ_CP053043.1_12895_13123_+,NA|99aa|down_3|NZ_CP053043.1_14214_14511_+,NA|142aa|down_4|NZ_CP053043.1_14507_14933_+,NA|119aa|down_5|NZ_CP053043.1_14949_15306_+,NA|276aa|down_7|NZ_CP053043.1_16959_17787_+	NA|280aa|up_9|NZ_CP053043.1_3253_4093_-	NA	NA|187aa|up_8|NZ_CP053043.1_4092_4653_-	NA	NA|185aa|up_7|NZ_CP053043.1_4649_5204_-	NA	NA|183aa|up_6|NZ_CP053043.1_5193_5742_-	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins	NA|153aa|up_5|NZ_CP053043.1_6228_6687_+	NA	NA|140aa|up_4|NZ_CP053043.1_7022_7442_-	NA	NA|271aa|up_3|NZ_CP053043.1_7765_8578_+	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|320aa|up_2|NZ_CP053043.1_8874_9834_+	pfam06406, StbA, StbA protein	NA|127aa|up_1|NZ_CP053043.1_9838_10219_+	pfam10784, Plasmid_stab_B, Plasmid stability protein	NA|164aa|up_0|NZ_CP053043.1_10229_10721_+	NA	NA|279aa|down_0|NZ_CP053043.1_12056_12893_+	pfam01051, Rep_3, Initiator Replication protein	NA|76aa|down_1|NZ_CP053043.1_12895_13123_+	NA	NA|278aa|down_2|NZ_CP053043.1_13384_14218_+	PRK02951, PRK02951, DNA replication terminus site-binding protein; Provisional	NA|99aa|down_3|NZ_CP053043.1_14214_14511_+	NA	NA|142aa|down_4|NZ_CP053043.1_14507_14933_+	NA	NA|119aa|down_5|NZ_CP053043.1_14949_15306_+	NA	NA|394aa|down_6|NZ_CP053043.1_15740_16921_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|276aa|down_7|NZ_CP053043.1_16959_17787_+	NA	NA|139aa|down_8|NZ_CP053043.1_18010_18427_+	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit	NA|421aa|down_9|NZ_CP053043.1_18426_19689_+	PRK03609, umuC, translesion error-prone DNA polymerase V subunit UmuC
