assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013170785.1_ASM1317078v1	NZ_CP033507	Mesorhizobium jarvisii strain ATCC 700743 chromosome, complete genome	1	3316586-3316665	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,RT,cas3	Orphan	TCCCCTGAAAATGCGCAGCATTT	23	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,RT,cas3	NA|422aa|up_9|NZ_CP033507.1_3309017_3310283_+,NA|194aa|up_8|NZ_CP033507.1_3310482_3311064_-,NA|199aa|up_7|NZ_CP033507.1_3311060_3311657_-,NA|194aa|up_6|NZ_CP033507.1_3311653_3312235_-,NA|140aa|up_5|NZ_CP033507.1_3312334_3312754_-,NA|101aa|up_4|NZ_CP033507.1_3312870_3313173_+,NA|126aa|down_0|NZ_CP033507.1_3316784_3317162_+,NA|198aa|down_1|NZ_CP033507.1_3317336_3317930_+,NA|101aa|down_2|NZ_CP033507.1_3317988_3318291_-	NA|422aa|up_9|NZ_CP033507.1_3309017_3310283_+	NA	NA|194aa|up_8|NZ_CP033507.1_3310482_3311064_-	NA	NA|199aa|up_7|NZ_CP033507.1_3311060_3311657_-	NA	NA|194aa|up_6|NZ_CP033507.1_3311653_3312235_-	NA	NA|140aa|up_5|NZ_CP033507.1_3312334_3312754_-	NA	NA|101aa|up_4|NZ_CP033507.1_3312870_3313173_+	NA	NA|235aa|up_3|NZ_CP033507.1_3313228_3313933_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|226aa|up_2|NZ_CP033507.1_3314521_3315199_+	COG5352, COG5352, Uncharacterized protein conserved in bacteria [Function unknown]	NA|106aa|up_1|NZ_CP033507.1_3315398_3315716_-	pfam06169, DUF982, Protein of unknown function (DUF982)	NA|94aa|up_0|NZ_CP033507.1_3315800_3316082_-	pfam06169, DUF982, Protein of unknown function (DUF982)	NA|126aa|down_0|NZ_CP033507.1_3316784_3317162_+	NA	NA|198aa|down_1|NZ_CP033507.1_3317336_3317930_+	NA	NA|101aa|down_2|NZ_CP033507.1_3317988_3318291_-	NA	NA|657aa|down_3|NZ_CP033507.1_3318483_3320454_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|166aa|down_4|NZ_CP033507.1_3320592_3321090_-	COG5395, COG5395, Predicted membrane protein [Function unknown]	NA|102aa|down_5|NZ_CP033507.1_3321225_3321531_-	pfam06945, DUF1289, Protein of unknown function (DUF1289)	NA|276aa|down_6|NZ_CP033507.1_3321979_3322807_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|427aa|down_7|NZ_CP033507.1_3322809_3324090_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|351aa|down_8|NZ_CP033507.1_3324096_3325149_-	cd13589, PBP2_polyamine_RpCGA009, The periplasmic-binding component of an uncharacterized ABC transport system from Rhodopseudomonas palustris CGA009 and related proteins; contains the type 2 periplasmic-binding fold	NA|378aa|down_9|NZ_CP033507.1_3325192_3326326_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
GCF_013170785.1_ASM1317078v1	NZ_CP033507	Mesorhizobium jarvisii strain ATCC 700743 chromosome, complete genome	2	3554515-3554964	1	CRT	no		csa3,WYL,DEDDh,RT,cas3	Orphan	CCTTGCCCTGGGCCTGCT	18	1	1	3554893-3554910	NZ_CP033507.1_2630240-2630223	NA	12	12	Orphan	csa3,WYL,DEDDh,RT,cas3	NA|495aa|up_7|NZ_CP033507.1_3545143_3546628_-,NA|152aa|up_4|NZ_CP033507.1_3550141_3550597_-,NA|76aa|up_3|NZ_CP033507.1_3550930_3551158_+,NA|55aa|up_1|NZ_CP033507.1_3553491_3553656_-,NA|77aa|up_0|NZ_CP033507.1_3553832_3554063_+,NA|101aa|down_1|NZ_CP033507.1_3556569_3556872_-,NA|99aa|down_6|NZ_CP033507.1_3560646_3560943_-	NA|358aa|up_9|NZ_CP033507.1_3541786_3542860_+	PRK01966, ddl, D-alanine--D-alanine ligase	NA|659aa|up_8|NZ_CP033507.1_3543070_3545047_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|495aa|up_7|NZ_CP033507.1_3545143_3546628_-	NA	NA|299aa|up_6|NZ_CP033507.1_3546904_3547801_+	cd05155, APH_ChoK_like_1, Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase and Choline kinase	NA|739aa|up_5|NZ_CP033507.1_3547928_3550145_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|152aa|up_4|NZ_CP033507.1_3550141_3550597_-	NA	NA|76aa|up_3|NZ_CP033507.1_3550930_3551158_+	NA	NA|730aa|up_2|NZ_CP033507.1_3551248_3553438_-	COG4249, COG4249, Uncharacterized protein containing caspase domain [General function prediction only]	NA|55aa|up_1|NZ_CP033507.1_3553491_3553656_-	NA	NA|77aa|up_0|NZ_CP033507.1_3553832_3554063_+	NA	NA|335aa|down_0|NZ_CP033507.1_3555378_3556383_-	cd19076, AKR_AKR13A_13D, AKR13A and AKR13D families of aldo-keto reductase (AKR)	NA|101aa|down_1|NZ_CP033507.1_3556569_3556872_-	NA	NA|80aa|down_2|NZ_CP033507.1_3557145_3557385_+	PRK02967, PRK02967, nickel-responsive transcriptional regulator NikR	NA|386aa|down_3|NZ_CP033507.1_3557463_3558621_+	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|78aa|down_4|NZ_CP033507.1_3558804_3559038_-	COG2155, COG2155, Uncharacterized conserved protein [Function unknown]	NA|82aa|down_5|NZ_CP033507.1_3559157_3559403_-	pfam06169, DUF982, Protein of unknown function (DUF982)	NA|99aa|down_6|NZ_CP033507.1_3560646_3560943_-	NA	NA|161aa|down_7|NZ_CP033507.1_3561346_3561829_-	pfam16242, Pyrid_ox_like, Pyridoxamine 5'-phosphate oxidase like	NA|179aa|down_8|NZ_CP033507.1_3561985_3562522_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|301aa|down_9|NZ_CP033507.1_3562518_3563421_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold
GCF_013170785.1_ASM1317078v1	NZ_CP033507	Mesorhizobium jarvisii strain ATCC 700743 chromosome, complete genome	3	4602005-4606126	2	CRT	no		csa3,WYL,DEDDh,RT,cas3	Orphan	GCNCCGGTCGAGCCNGTNGC	20	3	11	4603411-4603435|4603411-4603435|4603411-4603435|4604149-4604173|4605049-4605073|4605049-4605073|4605049-4605073|4605049-4605073|4605049-4605073|4605049-4605073|4605049-4605073	NZ_CP033507.1_4594130-4594154|NZ_CP033507.1_4593212-4593236|NZ_CP033507.1_4594697-4594721|NZ_CP033507.1_4598664-4598688|NZ_CP033507.1_4598898-4598922|NZ_CP033507.1_4594247-4594271|NZ_CP033507.1_4594445-4594469|NZ_CP033507.1_4596333-4596357|NZ_CP033507.1_4596747-4596771|NZ_CP033507.1_4597620-4597644|NZ_CP033507.1_4598016-4598040	NA	61	61	Orphan	csa3,WYL,DEDDh,RT,cas3	NA,NA|105aa|down_0|NZ_CP033507.1_4607126_4607441_-	NA|324aa|up_9|NZ_CP033507.1_4582571_4583543_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|320aa|up_8|NZ_CP033507.1_4583539_4584499_+	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|327aa|up_7|NZ_CP033507.1_4584507_4585488_+	PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional	NA|101aa|up_6|NZ_CP033507.1_4585607_4585910_+	pfam06169, DUF982, Protein of unknown function (DUF982)	NA|122aa|up_5|NZ_CP033507.1_4586007_4586373_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|579aa|up_4|NZ_CP033507.1_4586463_4588200_-	sd00010, SLR, Sel1-like repeat	NA|469aa|up_3|NZ_CP033507.1_4588229_4589636_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|765aa|up_2|NZ_CP033507.1_4589677_4591972_-	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|1085aa|up_1|NZ_CP033507.1_4592179_4595434_-	PRK08026, PRK08026, FliC/FljB family flagellin	NA|281aa|up_0|NZ_CP033507.1_4599990_4600833_-	pfam14252, DUF4347, Domain of unknown function (DUF4347)	NA|105aa|down_0|NZ_CP033507.1_4607126_4607441_-	NA	NA|935aa|down_1|NZ_CP033507.1_4608973_4611778_+	COG3306, COG3306, Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]	NA|204aa|down_2|NZ_CP033507.1_4611929_4612541_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|784aa|down_3|NZ_CP033507.1_4612630_4614982_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|333aa|down_4|NZ_CP033507.1_4618458_4619457_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|236aa|down_5|NZ_CP033507.1_4619459_4620167_-	COG3577, COG3577, Predicted aspartyl protease [General function prediction only]	NA|77aa|down_6|NZ_CP033507.1_4620279_4620510_-	COG3313, COG3313, Predicted Fe-S protein [General function prediction only]	NA|333aa|down_7|NZ_CP033507.1_4620707_4621706_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|176aa|down_8|NZ_CP033507.1_4621726_4622254_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|507aa|down_9|NZ_CP033507.1_4622306_4623827_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_013170785.1_ASM1317078v1	NZ_CP033507	Mesorhizobium jarvisii strain ATCC 700743 chromosome, complete genome	4	4993261-4993348	2	CRISPRCasFinder	no		csa3,WYL,DEDDh,RT,cas3	Orphan	CGCAAGACCGGATTCCACTTTTGCTGATCGC	31	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,RT,cas3	NA,NA	NA|423aa|up_9|NZ_CP033507.1_4982902_4984171_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|252aa|up_8|NZ_CP033507.1_4984190_4984946_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|506aa|up_7|NZ_CP033507.1_4984973_4986491_-	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	NA|388aa|up_6|NZ_CP033507.1_4986678_4987842_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|225aa|up_5|NZ_CP033507.1_4988082_4988757_+	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|217aa|up_4|NZ_CP033507.1_4988778_4989429_+	COG2808, PaiB, Transcriptional regulator [Transcription]	NA|277aa|up_3|NZ_CP033507.1_4989425_4990256_-	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily	NA|550aa|up_2|NZ_CP033507.1_4990301_4991951_-	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]	NA|111aa|up_1|NZ_CP033507.1_4991992_4992325_-	COG3952, COG3952, Predicted membrane protein [Function unknown]	NA|245aa|up_0|NZ_CP033507.1_4992317_4993052_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|418aa|down_0|NZ_CP033507.1_4993419_4994673_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|1127aa|down_1|NZ_CP033507.1_4994679_4998060_-	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein	NA|156aa|down_2|NZ_CP033507.1_4998155_4998623_+	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|377aa|down_3|NZ_CP033507.1_4998673_4999804_-	COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]	NA|333aa|down_4|NZ_CP033507.1_4999800_5000799_-	COG3000, ERG3, Sterol desaturase [Lipid metabolism]	NA|435aa|down_5|NZ_CP033507.1_5001106_5002411_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|480aa|down_6|NZ_CP033507.1_5002665_5004105_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|248aa|down_7|NZ_CP033507.1_5004101_5004845_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|148aa|down_8|NZ_CP033507.1_5004841_5005285_+	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|343aa|down_9|NZ_CP033507.1_5005368_5006397_+	pfam09084, NMT1, NMT1/THI5 like
