assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013167795.1_ASM1316779v1	NZ_CP038374	Escherichia coli O157:H7 strain F3113 chromosome, complete genome	1	619918-620067	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|573aa|up_6|NZ_CP038374.1_611101_612820_+,NA	NA|238aa|up_9|NZ_CP038374.1_609004_609718_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP038374.1_609788_610382_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP038374.1_610526_610979_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|573aa|up_6|NZ_CP038374.1_611101_612820_+	NA	NA|335aa|up_5|NZ_CP038374.1_612876_613881_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP038374.1_614042_614459_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP038374.1_614504_615008_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP038374.1_615200_616397_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP038374.1_616451_619307_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP038374.1_619306_619750_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP038374.1_620103_621615_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP038374.1_621881_622982_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP038374.1_622981_624064_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP038374.1_624224_625727_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP038374.1_625856_626876_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|650aa|down_5|NZ_CP038374.1_627246_629196_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|126aa|down_6|NZ_CP038374.1_629478_629856_-	pfam13711, DUF4160, Domain of unknown function (DUF4160)	NA|111aa|down_7|NZ_CP038374.1_629977_630310_-	pfam07978, NIPSNAP, NIPSNAP	NA|156aa|down_8|NZ_CP038374.1_631313_631781_-	COG4333, COG4333, Uncharacterized protein conserved in bacteria [Function unknown]	NA|190aa|down_9|NZ_CP038374.1_631973_632543_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain
GCF_013167795.1_ASM1316779v1	NZ_CP038374	Escherichia coli O157:H7 strain F3113 chromosome, complete genome	2	849140-849274	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|75aa|down_8|NZ_CP038374.1_859973_860198_+	NA|126aa|up_9|NZ_CP038374.1_833864_834242_-	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|274aa|up_8|NZ_CP038374.1_834244_835066_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_7|NZ_CP038374.1_835062_836052_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_6|NZ_CP038374.1_836051_837338_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_5|NZ_CP038374.1_837390_839745_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_4|NZ_CP038374.1_839999_840815_+	PRK09430, djlA, co-chaperone DjlA	NA|220aa|up_3|NZ_CP038374.1_842263_842923_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP038374.1_842934_845841_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP038374.1_846004_848356_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP038374.1_848430_849126_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP038374.1_849325_850828_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP038374.1_850838_852539_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP038374.1_852877_853756_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP038374.1_853841_854606_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP038374.1_854692_855391_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP038374.1_855374_856985_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP038374.1_856960_857944_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|405aa|down_7|NZ_CP038374.1_858477_859691_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|75aa|down_8|NZ_CP038374.1_859973_860198_+	NA	NA|553aa|down_9|NZ_CP038374.1_860426_862085_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR
GCF_013167795.1_ASM1316779v1	NZ_CP038374	Escherichia coli O157:H7 strain F3113 chromosome, complete genome	3	3988004-3988096	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CCGCATCACGTATTTGCACACTT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA|116aa|up_1|NZ_CP038374.1_3986918_3987266_-,NA|152aa|down_0|NZ_CP038374.1_3988193_3988649_+,NA|104aa|down_2|NZ_CP038374.1_3989693_3990005_+,NA|141aa|down_3|NZ_CP038374.1_3990023_3990446_+,NA|112aa|down_4|NZ_CP038374.1_3990451_3990787_+,NA|94aa|down_5|NZ_CP038374.1_3990917_3991199_+,NA|107aa|down_6|NZ_CP038374.1_3991211_3991532_+,NA|78aa|down_7|NZ_CP038374.1_3991816_3992050_+,NA|197aa|down_8|NZ_CP038374.1_3992039_3992630_+	NA|300aa|up_9|NZ_CP038374.1_3978880_3979780_+	PRK05330, PRK05330, oxygen-dependent coproporphyrinogen oxidase	NA|375aa|up_8|NZ_CP038374.1_3979713_3980838_-	PRK10130, PRK10130, HTH-type transcriptional regulator EutR	NA|167aa|up_7|NZ_CP038374.1_3980883_3981384_-	PRK15466, PRK15466, ethanolamine utilization microcompartment protein EutK	NA|220aa|up_6|NZ_CP038374.1_3981396_3982056_-	PRK15405, PRK15405, ethanolamine utilization microcompartment protein EutL	NA|296aa|up_5|NZ_CP038374.1_3982065_3982953_-	COG4302, EutC, Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]	NA|454aa|up_4|NZ_CP038374.1_3982973_3984335_-	COG4303, EutB, Ethanolamine ammonia-lyase, large subunit [Amino acid transport and metabolism]	NA|403aa|up_3|NZ_CP038374.1_3984522_3985731_+	PRK09692, PRK09692, integrase; Provisional	NA|172aa|up_2|NZ_CP038374.1_3986416_3986932_-	pfam13957, YafO_toxin, Toxin YafO, type II toxin-antitoxin system	NA|116aa|up_1|NZ_CP038374.1_3986918_3987266_-	NA	NA|76aa|up_0|NZ_CP038374.1_3987538_3987766_+	pfam13730, HTH_36, Helix-turn-helix domain	NA|152aa|down_0|NZ_CP038374.1_3988193_3988649_+	NA	NA|132aa|down_1|NZ_CP038374.1_3989230_3989626_+	pfam13392, HNH_3, HNH endonuclease	NA|104aa|down_2|NZ_CP038374.1_3989693_3990005_+	NA	NA|141aa|down_3|NZ_CP038374.1_3990023_3990446_+	NA	NA|112aa|down_4|NZ_CP038374.1_3990451_3990787_+	NA	NA|94aa|down_5|NZ_CP038374.1_3990917_3991199_+	NA	NA|107aa|down_6|NZ_CP038374.1_3991211_3991532_+	NA	NA|78aa|down_7|NZ_CP038374.1_3991816_3992050_+	NA	NA|197aa|down_8|NZ_CP038374.1_3992039_3992630_+	NA	NA|733aa|down_9|NZ_CP038374.1_3992961_3995160_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain
GCF_013167795.1_ASM1316779v1	NZ_CP038374	Escherichia coli O157:H7 strain F3113 chromosome, complete genome	4	4336488-4336821	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,4	5	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|254aa|up_9|NZ_CP038374.1_4328300_4329062_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP038374.1_4329042_4330092_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP038374.1_4330088_4330568_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP038374.1_4330567_4331278_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP038374.1_4331296_4331608_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP038374.1_4331801_4332125_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP038374.1_4332174_4332780_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP038374.1_4332779_4334207_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP038374.1_4334208_4335117_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP038374.1_4335368_4336406_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP038374.1_4336917_4337211_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP038374.1_4337207_4338131_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP038374.1_4338127_4338778_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP038374.1_4338759_4339506_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP038374.1_4339516_4340572_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP038374.1_4340583_4341120_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP038374.1_4341116_4342679_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP038374.1_4342776_4345476_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP038374.1_4345667_4345820_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP038374.1_4346083_4346818_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_013167795.1_ASM1316779v1	NZ_CP038374	Escherichia coli O157:H7 strain F3113 chromosome, complete genome	5	4362512-4362725	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	Unclear	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	3,3,3	3	Unclear	DEDDh,c2c9_V-U4,cas3,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA|52aa|down_3|NZ_CP038374.1_4365275_4365431_+	NA|600aa|up_9|NZ_CP038374.1_4348603_4350403_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|121aa|up_8|NZ_CP038374.1_4350721_4351084_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP038374.1_4351161_4352433_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP038374.1_4352423_4352684_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP038374.1_4352700_4353276_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP038374.1_4354280_4355060_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP038374.1_4356467_4357922_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP038374.1_4357991_4358777_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP038374.1_4359095_4360373_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP038374.1_4360399_4361878_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP038374.1_4363064_4363736_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP038374.1_4363890_4364511_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP038374.1_4364524_4365199_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|52aa|down_3|NZ_CP038374.1_4365275_4365431_+	NA	NA|383aa|down_4|NZ_CP038374.1_4365432_4366581_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_5|NZ_CP038374.1_4366577_4367492_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_6|NZ_CP038374.1_4367551_4368850_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_7|NZ_CP038374.1_4368937_4370575_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_8|NZ_CP038374.1_4370802_4371594_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_9|NZ_CP038374.1_4371664_4372000_-	PRK09907, PRK09907, endoribonuclease MazF
