assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	1	1159604-1159939	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA	NA|83aa|up_9|NZ_CP038336.1_1150080_1150329_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|NZ_CP038336.1_1150328_1150664_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|NZ_CP038336.1_1150734_1151526_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP038336.1_1151753_1153391_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP038336.1_1153478_1154777_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP038336.1_1154836_1155751_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP038336.1_1155747_1156896_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|225aa|up_2|NZ_CP038336.1_1157129_1157804_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|207aa|up_1|NZ_CP038336.1_1157817_1158438_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP038336.1_1158592_1159264_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP038336.1_1160575_1162054_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|262aa|down_1|NZ_CP038336.1_1163677_1164463_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_2|NZ_CP038336.1_1164532_1165987_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|260aa|down_3|NZ_CP038336.1_1167345_1168125_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|192aa|down_4|NZ_CP038336.1_1169129_1169705_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_5|NZ_CP038336.1_1169721_1169982_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_6|NZ_CP038336.1_1169972_1171244_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_7|NZ_CP038336.1_1171321_1171684_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_8|NZ_CP038336.1_1172002_1173802_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_9|NZ_CP038336.1_1173801_1175514_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	2	1185585-1185919	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	1	1	1185614-1185646	NZ_CP038338.1_49735-49767	I-E:I-E:I-E	4,5,5	5	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA	NA|245aa|up_9|NZ_CP038336.1_1175587_1176322_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP038336.1_1176585_1176738_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP038336.1_1176929_1179629_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP038336.1_1179726_1181289_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP038336.1_1181285_1181822_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP038336.1_1181833_1182889_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP038336.1_1182899_1183646_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP038336.1_1183627_1184278_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP038336.1_1184274_1185198_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP038336.1_1185194_1185488_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP038336.1_1186000_1187038_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP038336.1_1187289_1188198_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP038336.1_1188199_1189627_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP038336.1_1189626_1190232_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP038336.1_1190281_1190605_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP038336.1_1190798_1191110_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP038336.1_1191128_1191839_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP038336.1_1191838_1192318_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP038336.1_1192314_1193364_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP038336.1_1193344_1194106_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	3	1744509-1744614	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	CCGAGCCGTAGGCCGGATTAGGCGTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|357aa|up_5|NZ_CP038336.1_1738488_1739559_-,NA	NA|420aa|up_9|NZ_CP038336.1_1732675_1733935_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_8|NZ_CP038336.1_1733924_1735553_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_7|NZ_CP038336.1_1735825_1737184_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_6|NZ_CP038336.1_1737188_1738265_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|357aa|up_5|NZ_CP038336.1_1738488_1739559_-	NA	NA|293aa|up_4|NZ_CP038336.1_1740022_1740901_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|397aa|up_3|NZ_CP038336.1_1741052_1742243_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP038336.1_1742323_1742974_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP038336.1_1743027_1743282_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP038336.1_1743281_1744412_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP038336.1_1744638_1746924_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP038336.1_1747619_1751372_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP038336.1_1751512_1752235_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP038336.1_1752381_1755009_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|543aa|down_4|NZ_CP038336.1_1755216_1756845_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP038336.1_1756841_1757465_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|265aa|down_6|NZ_CP038336.1_1762001_1762796_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|261aa|down_7|NZ_CP038336.1_1762868_1763651_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP038336.1_1763655_1764432_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|950aa|down_9|NZ_CP038336.1_1764706_1767556_+	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	4	2250203-2250352	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Unclear	TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACA	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|22aa|up_2|NZ_CP038336.1_2248290_2248356_+,NA	NA|273aa|up_9|NZ_CP038336.1_2242257_2243076_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP038336.1_2243072_2243639_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP038336.1_2243948_2245721_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP038336.1_2245838_2246291_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP038336.1_2246319_2247060_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP038336.1_2247094_2247616_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP038336.1_2247617_2248220_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP038336.1_2248290_2248356_+	NA	NA|204aa|up_1|NZ_CP038336.1_2248494_2249106_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP038336.1_2249114_2250125_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP038336.1_2250370_2251156_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP038336.1_2251152_2251908_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP038336.1_2251986_2252919_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP038336.1_2252934_2254257_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP038336.1_2254376_2255348_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP038336.1_2255478_2256921_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP038336.1_2257048_2257918_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP038336.1_2258255_2259731_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP038336.1_2259965_2261777_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP038336.1_2261813_2262455_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	5	2448812-2448935	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA|30aa|down_7|NZ_CP038336.1_2457831_2457921_+	NA|471aa|up_9|NZ_CP038336.1_2438265_2439678_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP038336.1_2440234_2440444_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP038336.1_2440899_2441526_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP038336.1_2441546_2443649_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP038336.1_2443661_2444300_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP038336.1_2444363_2445032_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP038336.1_2445028_2445814_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP038336.1_2445817_2446630_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP038336.1_2446641_2448246_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP038336.1_2448371_2448677_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP038336.1_2449249_2450506_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP038336.1_2450546_2451920_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP038336.1_2452134_2452776_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP038336.1_2452815_2453964_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP038336.1_2454254_2455466_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP038336.1_2455578_2456511_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP038336.1_2456507_2457533_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP038336.1_2457831_2457921_+	NA	NA|390aa|down_8|NZ_CP038336.1_2458086_2459256_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP038336.1_2459401_2459983_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	6	3187954-3188067	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|47aa|up_9|NZ_CP038336.1_3182413_3182554_-,NA|41aa|up_3|NZ_CP038336.1_3185903_3186026_-,NA|101aa|up_1|NZ_CP038336.1_3186490_3186793_-,NA|94aa|down_9|NZ_CP038336.1_3193138_3193420_+	NA|47aa|up_9|NZ_CP038336.1_3182413_3182554_-	NA	NA|121aa|up_8|NZ_CP038336.1_3182550_3182913_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP038336.1_3182909_3183200_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_6|NZ_CP038336.1_3183192_3183363_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_5|NZ_CP038336.1_3183362_3183818_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|509aa|up_4|NZ_CP038336.1_3184319_3185846_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|41aa|up_3|NZ_CP038336.1_3185903_3186026_-	NA	NA|111aa|up_2|NZ_CP038336.1_3186090_3186423_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP038336.1_3186490_3186793_-	NA	NA|234aa|up_0|NZ_CP038336.1_3186789_3187491_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP038336.1_3188503_3189043_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP038336.1_3189112_3189343_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP038336.1_3189447_3190137_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|69aa|down_3|NZ_CP038336.1_3190738_3190945_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP038336.1_3191020_3191317_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP038336.1_3191322_3192108_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP038336.1_3192104_3192785_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP038336.1_3192781_3192964_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP038336.1_3192936_3193128_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP038336.1_3193138_3193420_+	NA
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	7	3423640-3423731	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|70aa|up_8|NZ_CP038336.1_3412891_3413101_-,NA	NA|503aa|up_9|NZ_CP038336.1_3411224_3412733_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|70aa|up_8|NZ_CP038336.1_3412891_3413101_-	NA	NA|1321aa|up_7|NZ_CP038336.1_3413155_3417118_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_6|NZ_CP038336.1_3417157_3417796_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_5|NZ_CP038336.1_3418083_3419175_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_4|NZ_CP038336.1_3419174_3419867_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_3|NZ_CP038336.1_3419878_3420265_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|197aa|up_2|NZ_CP038336.1_3421081_3421672_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP038336.1_3421682_3422177_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP038336.1_3422197_3423526_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP038336.1_3424153_3424750_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP038336.1_3424770_3424998_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP038336.1_3425035_3426277_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP038336.1_3426567_3427824_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP038336.1_3428083_3429004_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP038336.1_3429003_3429309_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP038336.1_3429462_3430062_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP038336.1_3430058_3432605_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP038336.1_3432604_3433777_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP038336.1_3433906_3434599_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	8	4245907-4246048	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAGTCGTG	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA	NA|514aa|up_9|NZ_CP038336.1_4234167_4235709_+	COG3851, UhpB, Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]	NA|439aa|up_8|NZ_CP038336.1_4235781_4237098_+	cd17488, MFS_UhpC, Membrane sensor protein UhpC of the Major Facilitator Superfamily of transporters	NA|344aa|up_7|NZ_CP038336.1_4237094_4238126_+	cd13544, PBP2_Fbp_like_1, Substrate binding domain of a putative ferric iron transporter, a member of the type 2 periplasmic binding fold superfamily	NA|693aa|up_6|NZ_CP038336.1_4238194_4240273_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|349aa|up_5|NZ_CP038336.1_4240284_4241331_+	PRK11432, fbpC, ferric ABC transporter ATP-binding protein	NA|92aa|up_4|NZ_CP038336.1_4241490_4241766_+	PRK11352, PRK11352, formaldehyde-responsive transcriptional repressor FrmR	NA|370aa|up_3|NZ_CP038336.1_4241800_4242910_+	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases	NA|278aa|up_2|NZ_CP038336.1_4243002_4243836_+	TIGR02821, S-formylglutathione_hydrolase, S-formylglutathione hydrolase	NA|180aa|up_1|NZ_CP038336.1_4243960_4244500_-	COG3122, COG3122, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_0|NZ_CP038336.1_4244601_4245813_-	PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional	NA|338aa|down_0|NZ_CP038336.1_4246089_4247103_-	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated	NA|317aa|down_1|NZ_CP038336.1_4247099_4248050_-	PRK08300, PRK08300, acetaldehyde dehydrogenase; Validated	NA|270aa|down_2|NZ_CP038336.1_4248046_4248856_-	PRK11342, mhpD, 2-keto-4-pentenoate hydratase; Provisional	NA|289aa|down_3|NZ_CP038336.1_4248865_4249732_-	TIGR03343, 2-hydroxy-6-oxo-6-phenylhexa-24-dienoate_hydrolase, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	NA|315aa|down_4|NZ_CP038336.1_4249749_4250694_-	cd07365, MhpB_like, Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), which catalyzes the oxidization and subsequent ring-opening of 2,3-dihydroxyphenylpropionate	NA|555aa|down_5|NZ_CP038336.1_4250695_4252360_-	PRK06183, mhpA, bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase	NA|316aa|down_6|NZ_CP038336.1_4252436_4253384_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|259aa|down_7|NZ_CP038336.1_4253498_4254275_+	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|318aa|down_8|NZ_CP038336.1_4254294_4255248_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|361aa|down_9|NZ_CP038336.1_4255284_4256367_+	PRK09526, lacI, lac repressor; Reviewed
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	9	4663045-4663179	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|190aa|up_7|NZ_CP038336.1_4653433_4654003_-,NA|246aa|down_4|NZ_CP038336.1_4670472_4671210_-	NA|44aa|up_9|NZ_CP038336.1_4651326_4651458_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|553aa|up_8|NZ_CP038336.1_4651546_4653205_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|190aa|up_7|NZ_CP038336.1_4653433_4654003_-	NA	NA|328aa|up_6|NZ_CP038336.1_4654374_4655358_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP038336.1_4655333_4656944_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP038336.1_4656927_4657626_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP038336.1_4657712_4658477_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP038336.1_4658562_4659441_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP038336.1_4659779_4661480_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP038336.1_4661490_4662993_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP038336.1_4663192_4663888_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP038336.1_4663962_4666314_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP038336.1_4666477_4669384_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP038336.1_4669395_4670055_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|246aa|down_4|NZ_CP038336.1_4670472_4671210_-	NA	NA|272aa|down_5|NZ_CP038336.1_4671504_4672320_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|NZ_CP038336.1_4672574_4674929_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP038336.1_4674981_4676268_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP038336.1_4676267_4677257_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP038336.1_4677253_4678075_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	10	4687931-4688067	4	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	TGAATCACCAATATTGAAAAT	21	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA	NA|105aa|up_9|NZ_CP038336.1_4679306_4679621_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP038336.1_4679623_4679857_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP038336.1_4679942_4680422_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP038336.1_4680613_4682476_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP038336.1_4682468_4682999_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP038336.1_4683106_4684438_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP038336.1_4684495_4684783_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP038336.1_4684779_4686066_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP038336.1_4686116_4687058_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP038336.1_4687072_4687843_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP038336.1_4688316_4689831_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP038336.1_4689861_4691004_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP038336.1_4691132_4692350_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP038336.1_4692423_4693977_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP038336.1_4694085_4694871_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP038336.1_4694876_4695467_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP038336.1_4695585_4695981_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP038336.1_4696241_4699463_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP038336.1_4699480_4700629_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP038336.1_4701084_4701906_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_013167495.1_ASM1316749v1	NZ_CP038336	Escherichia coli O157:H7 strain LSU61 chromosome, complete genome	11	4884075-4884224	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA|573aa|down_6|NZ_CP038336.1_4891321_4893040_-	NA|551aa|up_9|NZ_CP038336.1_4870632_4872285_+	pfam01618, MotA_ExbB, MotA/TolQ/ExbB proton channel family	NA|236aa|up_8|NZ_CP038336.1_4872291_4872999_+	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]	NA|368aa|up_7|NZ_CP038336.1_4873002_4874106_+	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|284aa|up_6|NZ_CP038336.1_4874646_4875498_+	COG3440, COG3440, Predicted restriction endonuclease [Defense mechanisms]	NA|276aa|up_5|NZ_CP038336.1_4875957_4876785_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP038336.1_4877265_4878285_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP038336.1_4878414_4879917_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP038336.1_4880077_4881160_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP038336.1_4881159_4882260_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP038336.1_4882526_4884038_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP038336.1_4884391_4884835_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP038336.1_4884834_4887690_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP038336.1_4887744_4888941_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP038336.1_4889133_4889637_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP038336.1_4889682_4890099_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP038336.1_4890260_4891265_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|573aa|down_6|NZ_CP038336.1_4891321_4893040_-	NA	NA|151aa|down_7|NZ_CP038336.1_4893162_4893615_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP038336.1_4893759_4894353_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP038336.1_4894423_4895137_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_013167495.1_ASM1316749v1	NZ_CP038337	Escherichia coli O157:H7 strain LSU61 plasmid pLSU61-2, complete sequence	1	26019-26127	1	CRISPRCasFinder	no			Orphan	ACCATAAATCTGTCCCTCTTTGACCATAAAT	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|98aa|up_7|NZ_CP038337.1_20187_20481_-,NA|78aa|up_3|NZ_CP038337.1_23068_23302_+,NA|108aa|down_0|NZ_CP038337.1_27401_27725_+,NA|75aa|down_1|NZ_CP038337.1_27767_27992_+,NA|89aa|down_3|NZ_CP038337.1_28362_28629_+,NA|110aa|down_5|NZ_CP038337.1_29299_29629_+,NA|93aa|down_6|NZ_CP038337.1_29686_29965_+,NA|235aa|down_9|NZ_CP038337.1_31069_31774_-	NA|246aa|up_9|NZ_CP038337.1_16565_17303_-	cd16424, VirB8, periplasmic domain of VirB8 protein	NA|107aa|up_8|NZ_CP038337.1_19809_20130_-	COG3702, VirB3, Type IV secretory pathway, VirB3 components [Intracellular trafficking and secretion]	NA|98aa|up_7|NZ_CP038337.1_20187_20481_-	NA	NA|204aa|up_6|NZ_CP038337.1_20473_21085_-	cd16892, LT_VirB1-like, VirB1-like subfamily	NA|332aa|up_5|NZ_CP038337.1_21417_22413_+	pfam04610, TrbL, TrbL/VirB6 plasmid conjugal transfer protein	NA|214aa|up_4|NZ_CP038337.1_22414_23056_+	pfam07996, T4SS, Type IV secretion system proteins	NA|78aa|up_3|NZ_CP038337.1_23068_23302_+	NA	NA|96aa|up_2|NZ_CP038337.1_23342_23630_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|113aa|up_1|NZ_CP038337.1_23828_24167_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|335aa|up_0|NZ_CP038337.1_24694_25699_-	pfam01051, Rep_3, Initiator Replication protein	NA|108aa|down_0|NZ_CP038337.1_27401_27725_+	NA	NA|75aa|down_1|NZ_CP038337.1_27767_27992_+	NA	NA|75aa|down_2|NZ_CP038337.1_28087_28312_+	cd04702, ASRGL1_like, Metazoan L-Asparaginase type 2	NA|89aa|down_3|NZ_CP038337.1_28362_28629_+	NA	NA|81aa|down_4|NZ_CP038337.1_28618_28861_+	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|110aa|down_5|NZ_CP038337.1_29299_29629_+	NA	NA|93aa|down_6|NZ_CP038337.1_29686_29965_+	NA	NA|61aa|down_7|NZ_CP038337.1_30396_30579_+	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|146aa|down_8|NZ_CP038337.1_30603_31041_+	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|235aa|down_9|NZ_CP038337.1_31069_31774_-	NA
