assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	1	1095229-1095317	1	CRISPRCasFinder	no	cas3	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACC	28	0	0	NA	NA	I-E	1	1	Unclear	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA	NA|83aa|up_9|NZ_CP038287.1_1085705_1085954_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|NZ_CP038287.1_1085953_1086289_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|NZ_CP038287.1_1086359_1087151_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP038287.1_1087378_1089016_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP038287.1_1089103_1090402_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP038287.1_1090461_1091376_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP038287.1_1091372_1092521_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|225aa|up_2|NZ_CP038287.1_1092754_1093429_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|207aa|up_1|NZ_CP038287.1_1093442_1094063_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP038287.1_1094217_1094889_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP038287.1_1095951_1097430_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP038287.1_1097456_1098734_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP038287.1_1099052_1099838_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP038287.1_1099907_1101362_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|260aa|down_4|NZ_CP038287.1_1102769_1103549_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|192aa|down_5|NZ_CP038287.1_1104553_1105129_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_6|NZ_CP038287.1_1105145_1105406_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_7|NZ_CP038287.1_1105396_1106668_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|down_8|NZ_CP038287.1_1106745_1107108_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_9|NZ_CP038287.1_1107426_1109226_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	2	1121008-1121220	1,1,2	PILER-CR,CRT,CRISPRCasFinder	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Type I-E	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,30,29	0	0	NA	NA	I-E:I-E:I-E	2,3,3	3	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA	NA|245aa|up_9|NZ_CP038287.1_1111011_1111746_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP038287.1_1112009_1112162_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP038287.1_1112353_1115053_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP038287.1_1115150_1116713_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP038287.1_1116709_1117246_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|352aa|up_4|NZ_CP038287.1_1117257_1118313_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP038287.1_1118323_1119070_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP038287.1_1119051_1119702_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP038287.1_1119698_1120622_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP038287.1_1120618_1120912_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP038287.1_1121301_1122339_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP038287.1_1122590_1123499_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP038287.1_1123500_1124928_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP038287.1_1124927_1125533_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP038287.1_1125582_1125906_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP038287.1_1126099_1126411_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP038287.1_1126429_1127140_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP038287.1_1127139_1127619_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP038287.1_1127615_1128665_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP038287.1_1128645_1129407_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	3	1644043-1644148	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	CCGAGCCGTAGGCCGGATTAGGCGTT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|357aa|up_5|NZ_CP038287.1_1638022_1639093_-,NA	NA|397aa|up_9|NZ_CP038287.1_1631022_1632213_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_8|NZ_CP038287.1_1632209_1633469_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_7|NZ_CP038287.1_1633458_1635087_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_6|NZ_CP038287.1_1635359_1636718_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|357aa|up_5|NZ_CP038287.1_1638022_1639093_-	NA	NA|293aa|up_4|NZ_CP038287.1_1639556_1640435_-	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|397aa|up_3|NZ_CP038287.1_1640586_1641777_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|217aa|up_2|NZ_CP038287.1_1641857_1642508_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP038287.1_1642561_1642816_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP038287.1_1642815_1643946_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP038287.1_1644172_1646458_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP038287.1_1647153_1650906_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP038287.1_1651046_1651769_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP038287.1_1651915_1654543_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|543aa|down_4|NZ_CP038287.1_1654750_1656379_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP038287.1_1656375_1656999_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP038287.1_1657142_1661537_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|265aa|down_7|NZ_CP038287.1_1661537_1662332_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|261aa|down_8|NZ_CP038287.1_1662404_1663187_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_9|NZ_CP038287.1_1663191_1663968_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	4	2226476-2226625	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Unclear	TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACA	53	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|22aa|up_2|NZ_CP038287.1_2224563_2224629_+,NA	NA|273aa|up_9|NZ_CP038287.1_2218530_2219349_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP038287.1_2219345_2219912_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP038287.1_2220221_2221994_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP038287.1_2222111_2222564_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP038287.1_2222592_2223333_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP038287.1_2223367_2223889_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP038287.1_2223890_2224493_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP038287.1_2224563_2224629_+	NA	NA|204aa|up_1|NZ_CP038287.1_2224767_2225379_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP038287.1_2225387_2226398_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP038287.1_2226643_2227429_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP038287.1_2227425_2228181_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP038287.1_2228259_2229192_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP038287.1_2229207_2230530_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP038287.1_2230649_2231621_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP038287.1_2231751_2233194_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP038287.1_2233321_2234191_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP038287.1_2234528_2236004_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP038287.1_2236238_2238050_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP038287.1_2238086_2238728_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	5	2426400-2426523	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA|30aa|down_7|NZ_CP038287.1_2435419_2435509_+	NA|471aa|up_9|NZ_CP038287.1_2415853_2417266_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP038287.1_2417822_2418032_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP038287.1_2418487_2419114_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP038287.1_2419134_2421237_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP038287.1_2421249_2421888_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP038287.1_2421951_2422620_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP038287.1_2422616_2423402_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP038287.1_2423405_2424218_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP038287.1_2424229_2425834_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP038287.1_2425959_2426265_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP038287.1_2426837_2428094_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP038287.1_2428134_2429508_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP038287.1_2429722_2430364_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP038287.1_2430403_2431552_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP038287.1_2431842_2433054_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP038287.1_2433166_2434099_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP038287.1_2434095_2435121_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP038287.1_2435419_2435509_+	NA	NA|390aa|down_8|NZ_CP038287.1_2435674_2436844_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP038287.1_2436989_2437571_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	6	3135800-3135913	2	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	1	1	3135870-3135894	NZ_CP038287.1_1784857-1784833	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|47aa|up_9|NZ_CP038287.1_3130259_3130400_-,NA|41aa|up_3|NZ_CP038287.1_3133749_3133872_-,NA|101aa|up_1|NZ_CP038287.1_3134336_3134639_-,NA|79aa|down_0|NZ_CP038287.1_3136261_3136498_+	NA|47aa|up_9|NZ_CP038287.1_3130259_3130400_-	NA	NA|121aa|up_8|NZ_CP038287.1_3130396_3130759_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP038287.1_3130755_3131046_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_6|NZ_CP038287.1_3131038_3131209_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_5|NZ_CP038287.1_3131208_3131664_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|509aa|up_4|NZ_CP038287.1_3132165_3133692_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|41aa|up_3|NZ_CP038287.1_3133749_3133872_-	NA	NA|111aa|up_2|NZ_CP038287.1_3133936_3134269_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP038287.1_3134336_3134639_-	NA	NA|234aa|up_0|NZ_CP038287.1_3134635_3135337_-	pfam06992, Phage_lambda_P, Replication protein P	NA|79aa|down_0|NZ_CP038287.1_3136261_3136498_+	NA	NA|381aa|down_1|NZ_CP038287.1_3136487_3137630_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|417aa|down_2|NZ_CP038287.1_3137743_3138994_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|218aa|down_3|NZ_CP038287.1_3139165_3139819_+	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE	NA|154aa|down_4|NZ_CP038287.1_3139828_3140290_+	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|369aa|down_5|NZ_CP038287.1_3140343_3141450_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|214aa|down_6|NZ_CP038287.1_3141485_3142127_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|457aa|down_7|NZ_CP038287.1_3142130_3143501_+	PRK09285, PRK09285, adenylosuccinate lyase; Provisional	NA|224aa|down_8|NZ_CP038287.1_3143669_3144341_+	PRK10816, PRK10816, two-component system response regulator PhoP	NA|487aa|down_9|NZ_CP038287.1_3144340_3145801_+	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	7	4629106-4629240	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|190aa|up_7|NZ_CP038287.1_4619494_4620064_-,NA|246aa|down_4|NZ_CP038287.1_4636533_4637271_-	NA|44aa|up_9|NZ_CP038287.1_4617387_4617519_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|553aa|up_8|NZ_CP038287.1_4617607_4619266_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|190aa|up_7|NZ_CP038287.1_4619494_4620064_-	NA	NA|328aa|up_6|NZ_CP038287.1_4620435_4621419_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP038287.1_4621394_4623005_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP038287.1_4622988_4623687_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP038287.1_4623773_4624538_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP038287.1_4624623_4625502_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP038287.1_4625840_4627541_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP038287.1_4627551_4629054_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP038287.1_4629253_4629949_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP038287.1_4630023_4632375_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP038287.1_4632538_4635445_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP038287.1_4635456_4636116_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|246aa|down_4|NZ_CP038287.1_4636533_4637271_-	NA	NA|272aa|down_5|NZ_CP038287.1_4637565_4638381_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_6|NZ_CP038287.1_4638635_4640990_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_7|NZ_CP038287.1_4641042_4642329_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_8|NZ_CP038287.1_4642328_4643318_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_9|NZ_CP038287.1_4643314_4644136_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	8	4653992-4654128	3	PILER-CR	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	TGAATCACCAATATTGAAAAT	21	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA,NA	NA|105aa|up_9|NZ_CP038287.1_4645367_4645682_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP038287.1_4645684_4645918_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP038287.1_4646003_4646483_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP038287.1_4646674_4648537_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP038287.1_4648529_4649060_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP038287.1_4649167_4650499_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP038287.1_4650556_4650844_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP038287.1_4650840_4652127_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP038287.1_4652177_4653119_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP038287.1_4653133_4653904_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP038287.1_4654377_4655892_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP038287.1_4655922_4657065_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP038287.1_4657193_4658411_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP038287.1_4658484_4660038_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP038287.1_4660146_4660932_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP038287.1_4660937_4661528_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP038287.1_4661646_4662042_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP038287.1_4662302_4665524_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP038287.1_4665541_4666690_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP038287.1_4667145_4667967_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_013167175.1_ASM1316717v1	NZ_CP038287	Escherichia coli O157:H7 strain TX 376-2 chromosome, complete genome	9	4863104-4863253	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	NA|245aa|up_7|NZ_CP038287.1_4853291_4854026_-,NA|579aa|down_6|NZ_CP038287.1_4870350_4872087_-	NA|191aa|up_9|NZ_CP038287.1_4851111_4851684_+	pfam07455, Psu, Phage polarity suppression protein (Psu)	NA|415aa|up_8|NZ_CP038287.1_4852009_4853254_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|245aa|up_7|NZ_CP038287.1_4853291_4854026_-	NA	NA|102aa|up_6|NZ_CP038287.1_4854102_4854408_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|425aa|up_5|NZ_CP038287.1_4854575_4855850_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP038287.1_4856294_4857314_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP038287.1_4857443_4858946_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP038287.1_4859106_4860189_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP038287.1_4860188_4861289_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP038287.1_4861555_4863067_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP038287.1_4863420_4863864_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP038287.1_4863863_4866719_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP038287.1_4866773_4867970_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP038287.1_4868162_4868666_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP038287.1_4868711_4869128_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP038287.1_4869289_4870294_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|579aa|down_6|NZ_CP038287.1_4870350_4872087_-	NA	NA|151aa|down_7|NZ_CP038287.1_4872209_4872662_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP038287.1_4872806_4873400_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|238aa|down_9|NZ_CP038287.1_4873470_4874184_+	PRK12742, PRK12742, SDR family oxidoreductase
