assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013166995.1_ASM1316699v1	NZ_CP053603	Escherichia coli strain Dam_Dcm chromosome, complete genome	1	413191-413335	1	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_2|NZ_CP053603.1_411061_411145_+,NA	NA|372aa|up_9|NZ_CP053603.1_405817_406933_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP053603.1_406949_407759_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP053603.1_407878_408337_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP053603.1_408519_409044_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP053603.1_409093_409285_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP053603.1_409542_410220_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP053603.1_410291_410576_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP053603.1_411061_411145_+	NA	NA|304aa|up_1|NZ_CP053603.1_411222_412134_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP053603.1_412258_413167_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP053603.1_413411_414596_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP053603.1_414721_417868_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP053603.1_417864_419067_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP053603.1_419256_419946_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP053603.1_420003_421299_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP053603.1_421705_423025_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP053603.1_423100_424474_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP053603.1_424629_426447_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP053603.1_426451_427033_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP053603.1_427125_428196_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_013166995.1_ASM1316699v1	NZ_CP053603	Escherichia coli strain Dam_Dcm chromosome, complete genome	2	554258-554354	2	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP053603.1_542038_543400_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP053603.1_543456_544758_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP053603.1_544779_545925_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP053603.1_546152_546938_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP053603.1_546948_548184_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP053603.1_548205_549255_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP053603.1_549571_551239_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP053603.1_551248_552508_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP053603.1_552518_553334_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP053603.1_553330_554224_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP053603.1_554418_555486_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP053603.1_555482_555992_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP053603.1_556109_556832_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP053603.1_556834_557329_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP053603.1_557502_558888_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP053603.1_558923_559445_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP053603.1_559552_559765_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP053603.1_559766_560633_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP053603.1_561103_561646_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP053603.1_561865_562558_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_013166995.1_ASM1316699v1	NZ_CP053603	Escherichia coli strain Dam_Dcm chromosome, complete genome	3	2330512-2330638	3	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|441aa|up_9|NZ_CP053603.1_2308066_2309389_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_8|NZ_CP053603.1_2309419_2310604_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_7|NZ_CP053603.1_2310677_2311454_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_6|NZ_CP053603.1_2311458_2313108_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_5|NZ_CP053603.1_2317646_2318270_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP053603.1_2318266_2319955_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP053603.1_2320103_2322731_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP053603.1_2322877_2323600_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP053603.1_2323727_2327480_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP053603.1_2328175_2330461_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP053603.1_2330694_2331825_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP053603.1_2331824_2332079_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP053603.1_2332132_2332783_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP053603.1_2333245_2334322_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP053603.1_2334326_2335685_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP053603.1_2335957_2337586_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP053603.1_2337575_2338835_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP053603.1_2338831_2340022_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_8|NZ_CP053603.1_2340214_2341114_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP053603.1_2341126_2341312_+	PRK09956, PRK09956, ISNCY family transposase
GCF_013166995.1_ASM1316699v1	NZ_CP053603	Escherichia coli strain Dam_Dcm chromosome, complete genome	4	2855559-2856321	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,9	12	TypeI-E	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP053603.1_2847370_2848132_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP053603.1_2848112_2849162_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP053603.1_2849158_2849638_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP053603.1_2849637_2850348_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP053603.1_2850366_2850678_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP053603.1_2850871_2851195_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP053603.1_2851244_2851850_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP053603.1_2851849_2853277_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP053603.1_2853278_2854187_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP053603.1_2854438_2855476_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP053603.1_2856426_2856711_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP053603.1_2856712_2857630_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP053603.1_2857645_2858245_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP053603.1_2858231_2858906_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP053603.1_2858908_2860000_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP053603.1_2860012_2860495_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP053603.1_2860487_2861996_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP053603.1_2862410_2865077_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP053603.1_2865435_2866170_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP053603.1_2866244_2867957_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_013166995.1_ASM1316699v1	NZ_CP053603	Escherichia coli strain Dam_Dcm chromosome, complete genome	5	2881872-2882265	5,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,5	6	Unclear	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP053603.1_2883414_2883555_+	NA|424aa|up_9|NZ_CP053603.1_2870514_2871786_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP053603.1_2871776_2872037_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP053603.1_2872053_2872629_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP053603.1_2872776_2873637_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP053603.1_2873633_2874413_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP053603.1_2874390_2875800_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP053603.1_2875821_2877276_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP053603.1_2877345_2878131_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP053603.1_2878449_2879727_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP053603.1_2879753_2881232_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP053603.1_2882604_2883276_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP053603.1_2883414_2883555_+	NA	NA|291aa|down_2|NZ_CP053603.1_2883568_2884441_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP053603.1_2884500_2885799_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP053603.1_2885886_2887524_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP053603.1_2887751_2888543_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP053603.1_2888613_2888949_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP053603.1_2888948_2889197_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP053603.1_2889274_2891509_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP053603.1_2891556_2892858_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
GCF_013166995.1_ASM1316699v1	NZ_CP053603	Escherichia coli strain Dam_Dcm chromosome, complete genome	6	3561626-3561766	6	CRISPRCasFinder	no		DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|357aa|down_1|NZ_CP053603.1_3564220_3565291_-	NA|184aa|up_9|NZ_CP053603.1_3551347_3551899_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP053603.1_3551903_3553148_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP053603.1_3553546_3554512_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP053603.1_3554794_3555781_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP053603.1_3555859_3556552_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP053603.1_3556628_3557132_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP053603.1_3557216_3558353_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP053603.1_3558636_3558951_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP053603.1_3558947_3559364_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP053603.1_3559408_3561427_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP053603.1_3561852_3564204_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP053603.1_3564220_3565291_-	NA	NA|478aa|down_2|NZ_CP053603.1_3565424_3566858_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP053603.1_3566920_3567370_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP053603.1_3567366_3570459_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP053603.1_3570642_3571626_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP053603.1_3571844_3572177_+	PRK10089, PRK10089, chaperone CsaA	NA|460aa|down_7|NZ_CP053603.1_3572218_3573598_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP053603.1_3574015_3575536_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP053603.1_3575689_3576313_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
