assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	1	61772-61921	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|551aa|down_6|NZ_CP053599.1_69035_70688_-	NA|340aa|up_9|NZ_CP053599.1_49964_50984_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP053599.1_50987_51551_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP053599.1_51767_52799_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP053599.1_52822_53587_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP053599.1_53649_54969_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP053599.1_55035_56034_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP053599.1_56111_57614_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP053599.1_57774_58857_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP053599.1_58856_59957_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP053599.1_60223_61735_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP053599.1_62088_62532_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP053599.1_62531_65387_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP053599.1_65442_66639_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP053599.1_66831_67335_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP053599.1_67380_67797_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP053599.1_67958_68963_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|NZ_CP053599.1_69035_70688_-	NA	NA|151aa|down_7|NZ_CP053599.1_70810_71263_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP053599.1_71407_72001_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP053599.1_72071_72785_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	2	1694062-1694888	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	34,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	9,13,13,9	13	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_CP053599.1_1692775_1692916_-,NA	NA|434aa|up_9|NZ_CP053599.1_1683472_1684774_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP053599.1_1684821_1687056_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP053599.1_1687133_1687382_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP053599.1_1687381_1687717_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP053599.1_1687787_1688579_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP053599.1_1688806_1690444_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP053599.1_1690531_1691830_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP053599.1_1691889_1692762_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP053599.1_1692775_1692916_-	NA	NA|224aa|up_0|NZ_CP053599.1_1693054_1693726_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP053599.1_1695526_1697005_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP053599.1_1697031_1698309_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP053599.1_1698627_1699413_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP053599.1_1699482_1700937_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP053599.1_1700958_1702368_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP053599.1_1702345_1703125_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP053599.1_1703121_1703982_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP053599.1_1704129_1704705_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP053599.1_1704721_1704982_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP053599.1_1704972_1706244_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	3	1713122-1713394	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|287aa|up_9|NZ_CP053599.1_1703121_1703982_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP053599.1_1704129_1704705_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP053599.1_1704721_1704982_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP053599.1_1704972_1706244_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NZ_CP053599.1_1706321_1706684_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP053599.1_1707002_1708802_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP053599.1_1708801_1710514_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP053599.1_1710587_1711322_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP053599.1_1711586_1711739_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP053599.1_1711931_1713044_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP053599.1_1713475_1714513_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053599.1_1714764_1715673_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053599.1_1715674_1717102_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053599.1_1717101_1717707_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053599.1_1717756_1718080_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053599.1_1718273_1718585_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053599.1_1718603_1719314_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053599.1_1719313_1719793_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053599.1_1719789_1720839_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053599.1_1720819_1721581_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	4	2193416-2193531	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GAGCCGTAGGCCGGATAAGGCGTTCACGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|268aa|up_9|NZ_CP053599.1_2182042_2182846_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP053599.1_2182886_2183789_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP053599.1_2183981_2185172_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP053599.1_2185168_2186428_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP053599.1_2186417_2188046_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP053599.1_2188318_2189677_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP053599.1_2189681_2190758_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP053599.1_2191220_2191871_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP053599.1_2191924_2192179_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP053599.1_2192178_2193309_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP053599.1_2193550_2195836_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP053599.1_2196531_2200284_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP053599.1_2200411_2201134_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP053599.1_2201280_2203908_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP053599.1_2204056_2205745_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP053599.1_2205741_2206365_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP053599.1_2206508_2210903_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP053599.1_2210903_2212553_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP053599.1_2212557_2213334_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP053599.1_2213407_2214592_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	5	2743512-2743635	5	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP053599.1_2752531_2752621_+	NA|471aa|up_9|NZ_CP053599.1_2732966_2734379_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP053599.1_2734935_2735145_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP053599.1_2735599_2736226_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP053599.1_2736246_2738349_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053599.1_2738361_2739000_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053599.1_2739063_2739732_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053599.1_2739728_2740514_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053599.1_2740517_2741330_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053599.1_2741341_2742946_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053599.1_2743071_2743377_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053599.1_2743949_2745206_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053599.1_2745246_2746620_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053599.1_2746834_2747476_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053599.1_2747515_2748664_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053599.1_2748954_2750166_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053599.1_2750278_2751211_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053599.1_2751207_2752233_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053599.1_2752531_2752621_+	NA	NA|390aa|down_8|NZ_CP053599.1_2752786_2753956_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053599.1_2754190_2754772_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	6	3362842-3362933	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP053599.1_3351917_3352127_-,NA	NA|70aa|up_9|NZ_CP053599.1_3351917_3352127_-	NA	NA|1321aa|up_8|NZ_CP053599.1_3352181_3356144_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053599.1_3356183_3356822_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053599.1_3357109_3358201_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053599.1_3358200_3358893_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053599.1_3358904_3359291_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053599.1_3359298_3360099_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053599.1_3360108_3360699_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053599.1_3360709_3361204_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053599.1_3361224_3362553_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053599.1_3363356_3363953_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053599.1_3363973_3364201_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053599.1_3364238_3365480_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP053599.1_3365772_3367029_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP053599.1_3367289_3368210_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP053599.1_3368209_3368515_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP053599.1_3368666_3369266_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP053599.1_3369262_3371809_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP053599.1_3371808_3372981_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP053599.1_3373110_3373803_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	7	3683736-3683880	7	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	CCTGATAAGACACGTTAAACGTCACATCAGGCATCGCTTGTCGGATGCGGCGCT	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|36aa|down_6|NZ_CP053599.1_3691968_3692076_+	NA|135aa|up_9|NZ_CP053599.1_3671502_3671907_-	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|98aa|up_8|NZ_CP053599.1_3672056_3672350_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_7|NZ_CP053599.1_3672349_3672463_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_6|NZ_CP053599.1_3672477_3673617_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_5|NZ_CP053599.1_3673632_3675201_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|878aa|up_4|NZ_CP053599.1_3676047_3678681_-	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|639aa|up_3|NZ_CP053599.1_3678698_3680615_-	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|241aa|up_2|NZ_CP053599.1_3680783_3681506_+	PRK09764, PRK09764, GntR family transcriptional regulator	NA|290aa|up_1|NZ_CP053599.1_3681609_3682479_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_0|NZ_CP053599.1_3682478_3683645_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|down_0|NZ_CP053599.1_3684010_3685228_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|down_1|NZ_CP053599.1_3685242_3688044_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_2|NZ_CP053599.1_3688344_3689061_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_3|NZ_CP053599.1_3689076_3690843_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_4|NZ_CP053599.1_3690842_3691190_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|135aa|down_5|NZ_CP053599.1_3691183_3691588_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_6|NZ_CP053599.1_3691968_3692076_+	NA	NA|428aa|down_7|NZ_CP053599.1_3692281_3693565_+	PRK05614, gltA, citrate synthase	NA|189aa|down_8|NZ_CP053599.1_3693954_3694521_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|down_9|NZ_CP053599.1_3694571_3697031_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	8	4028698-4028842	8	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_2|NZ_CP053599.1_4031664_4031748_-	NA|357aa|up_9|NZ_CP053599.1_4013836_4014907_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP053599.1_4014999_4015581_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP053599.1_4015585_4017403_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP053599.1_4017558_4018932_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP053599.1_4019007_4020327_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP053599.1_4020733_4022029_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP053599.1_4022086_4022776_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP053599.1_4022965_4024168_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP053599.1_4024164_4027311_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP053599.1_4027436_4028621_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP053599.1_4028865_4029774_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP053599.1_4029898_4030810_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP053599.1_4031664_4031748_-	NA	NA|95aa|down_3|NZ_CP053599.1_4032233_4032518_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP053599.1_4032589_4033267_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP053599.1_4033524_4033716_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP053599.1_4033765_4034290_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP053599.1_4034472_4034931_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP053599.1_4035050_4035860_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP053599.1_4035876_4036992_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	9	4152512-4152608	9	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|153aa|up_9|NZ_CP053599.1_4144390_4144849_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_CP053599.1_4145109_4146567_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|186aa|up_7|NZ_CP053599.1_4146623_4147181_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_CP053599.1_4147092_4147359_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_CP053599.1_4147592_4148045_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP053599.1_4148054_4148453_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP053599.1_4148455_4148749_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP053599.1_4148800_4149856_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP053599.1_4149926_4150712_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP053599.1_4150656_4152396_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP053599.1_4152611_4153109_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP053599.1_4153284_4154058_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP053599.1_4154243_4154504_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP053599.1_4154506_4154785_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP053599.1_4154940_4155681_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP053599.1_4155651_4156419_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP053599.1_4156624_4157203_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP053599.1_4157442_4159887_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP053599.1_4159929_4160403_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP053599.1_4160556_4161327_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_013166935.1_ASM1316693v1	NZ_CP053599	Escherichia coli strain NEBExpress chromosome, complete genome	10	4367680-4367821	10	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|444aa|up_9|NZ_CP053599.1_4355283_4356615_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_8|NZ_CP053599.1_4356671_4356959_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_7|NZ_CP053599.1_4356955_4358242_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_6|NZ_CP053599.1_4358292_4359234_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_5|NZ_CP053599.1_4359248_4360019_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_4|NZ_CP053599.1_4360492_4362007_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_3|NZ_CP053599.1_4362037_4363180_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|up_2|NZ_CP053599.1_4364598_4366152_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP053599.1_4366260_4367046_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP053599.1_4367051_4367642_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP053599.1_4367850_4368246_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP053599.1_4368507_4371729_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP053599.1_4371746_4372895_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP053599.1_4373350_4374172_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP053599.1_4374338_4375253_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP053599.1_4375318_4376269_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP053599.1_4376270_4376720_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP053599.1_4376844_4377339_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP053599.1_4377338_4380155_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP053599.1_4380197_4381139_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
