assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	1	61771-61920	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|551aa|down_6|NZ_CP053592.1_69034_70687_-	NA|340aa|up_9|NZ_CP053592.1_49963_50983_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP053592.1_50986_51550_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP053592.1_51766_52798_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP053592.1_52821_53586_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP053592.1_53648_54968_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP053592.1_55034_56033_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP053592.1_56110_57613_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP053592.1_57773_58856_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP053592.1_58855_59956_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP053592.1_60222_61734_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP053592.1_62087_62531_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP053592.1_62530_65386_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP053592.1_65441_66638_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP053592.1_66830_67334_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP053592.1_67379_67796_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP053592.1_67957_68962_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|551aa|down_6|NZ_CP053592.1_69034_70687_-	NA	NA|151aa|down_7|NZ_CP053592.1_70809_71262_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP053592.1_71406_72000_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP053592.1_72070_72784_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	2	1694034-1694860	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	34,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	9,13,13,9	13	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA|47aa|up_1|NZ_CP053592.1_1692747_1692888_-,NA	NA|434aa|up_9|NZ_CP053592.1_1683444_1684746_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP053592.1_1684793_1687028_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP053592.1_1687105_1687354_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP053592.1_1687353_1687689_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP053592.1_1687759_1688551_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP053592.1_1688778_1690416_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP053592.1_1690503_1691802_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP053592.1_1691861_1692734_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP053592.1_1692747_1692888_-	NA	NA|224aa|up_0|NZ_CP053592.1_1693026_1693698_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP053592.1_1695498_1696977_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP053592.1_1697003_1698281_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP053592.1_1698599_1699385_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP053592.1_1699454_1700909_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP053592.1_1700930_1702340_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP053592.1_1702317_1703097_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP053592.1_1703093_1703954_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP053592.1_1704101_1704677_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP053592.1_1704693_1704954_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP053592.1_1704944_1706216_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	3	1713094-1713366	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	4,4,4	4	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|287aa|up_9|NZ_CP053592.1_1703093_1703954_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP053592.1_1704101_1704677_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP053592.1_1704693_1704954_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP053592.1_1704944_1706216_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|121aa|up_5|NZ_CP053592.1_1706293_1706656_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP053592.1_1706974_1708774_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP053592.1_1708773_1710486_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP053592.1_1710559_1711294_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP053592.1_1711558_1711711_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP053592.1_1711903_1713016_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP053592.1_1713447_1714485_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053592.1_1714736_1715645_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053592.1_1715646_1717074_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053592.1_1717073_1717679_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053592.1_1717728_1718052_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053592.1_1718245_1718557_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053592.1_1718575_1719286_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053592.1_1719285_1719765_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053592.1_1719761_1720811_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053592.1_1720791_1721553_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4	2193388-2193503	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GAGCCGTAGGCCGGATAAGGCGTTCACGC	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|268aa|up_9|NZ_CP053592.1_2182014_2182818_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|301aa|up_8|NZ_CP053592.1_2182858_2183761_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP053592.1_2183953_2185144_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP053592.1_2185140_2186400_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP053592.1_2186389_2188018_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP053592.1_2188290_2189649_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP053592.1_2189653_2190730_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP053592.1_2191192_2191843_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP053592.1_2191896_2192151_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP053592.1_2192150_2193281_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP053592.1_2193522_2195808_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP053592.1_2196503_2200256_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP053592.1_2200383_2201106_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP053592.1_2201252_2203880_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP053592.1_2204028_2205717_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP053592.1_2205713_2206337_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP053592.1_2206480_2210875_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP053592.1_2210875_2212525_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP053592.1_2212529_2213306_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP053592.1_2213379_2214564_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	5	2743483-2743606	5	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP053592.1_2752502_2752592_+	NA|471aa|up_9|NZ_CP053592.1_2732937_2734350_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP053592.1_2734906_2735116_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP053592.1_2735570_2736197_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP053592.1_2736217_2738320_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053592.1_2738332_2738971_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053592.1_2739034_2739703_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053592.1_2739699_2740485_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053592.1_2740488_2741301_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053592.1_2741312_2742917_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053592.1_2743042_2743348_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053592.1_2743920_2745177_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053592.1_2745217_2746591_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053592.1_2746805_2747447_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053592.1_2747486_2748635_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053592.1_2748925_2750137_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053592.1_2750249_2751182_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053592.1_2751178_2752204_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053592.1_2752502_2752592_+	NA	NA|390aa|down_8|NZ_CP053592.1_2752757_2753927_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053592.1_2754161_2754743_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	6	3362813-3362904	6	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP053592.1_3351888_3352098_-,NA	NA|70aa|up_9|NZ_CP053592.1_3351888_3352098_-	NA	NA|1321aa|up_8|NZ_CP053592.1_3352152_3356115_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053592.1_3356154_3356793_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053592.1_3357080_3358172_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053592.1_3358171_3358864_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053592.1_3358875_3359262_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053592.1_3359269_3360070_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053592.1_3360079_3360670_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053592.1_3360680_3361175_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053592.1_3361195_3362524_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053592.1_3363327_3363924_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053592.1_3363944_3364172_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053592.1_3364209_3365451_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP053592.1_3365743_3367000_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP053592.1_3367260_3368181_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP053592.1_3368180_3368486_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP053592.1_3368637_3369237_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP053592.1_3369233_3371780_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP053592.1_3371779_3372952_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP053592.1_3373081_3373774_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	7	3683706-3683850	7	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	CCTGATAAGACACGTTAAACGTCACATCAGGCATCGCTTGTCGGATGCGGCGCT	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|36aa|down_6|NZ_CP053592.1_3691938_3692046_+	NA|135aa|up_9|NZ_CP053592.1_3671472_3671877_-	PRK10800, PRK10800, acyl-CoA thioesterase YbgC; Provisional	NA|98aa|up_8|NZ_CP053592.1_3672026_3672320_-	PRK10588, PRK10588, hypothetical protein; Provisional	NA|38aa|up_7|NZ_CP053592.1_3672319_3672433_-	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown]	NA|380aa|up_6|NZ_CP053592.1_3672447_3673587_-	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II	NA|523aa|up_5|NZ_CP053592.1_3673602_3675171_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|878aa|up_4|NZ_CP053592.1_3676017_3678651_-	PRK09819, PRK09819, mannosylglycerate hydrolase	NA|639aa|up_3|NZ_CP053592.1_3678668_3680585_-	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional	NA|241aa|up_2|NZ_CP053592.1_3680753_3681476_+	PRK09764, PRK09764, GntR family transcriptional regulator	NA|290aa|up_1|NZ_CP053592.1_3681579_3682449_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|389aa|up_0|NZ_CP053592.1_3682448_3683615_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|406aa|down_0|NZ_CP053592.1_3683980_3685198_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|934aa|down_1|NZ_CP053592.1_3685212_3688014_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|239aa|down_2|NZ_CP053592.1_3688314_3689031_-	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|589aa|down_3|NZ_CP053592.1_3689046_3690813_-	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|116aa|down_4|NZ_CP053592.1_3690812_3691160_-	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|135aa|down_5|NZ_CP053592.1_3691153_3691558_-	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|36aa|down_6|NZ_CP053592.1_3691938_3692046_+	NA	NA|428aa|down_7|NZ_CP053592.1_3692251_3693535_+	PRK05614, gltA, citrate synthase	NA|189aa|down_8|NZ_CP053592.1_3693924_3694491_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|820aa|down_9|NZ_CP053592.1_3694541_3697001_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	8	4028668-4028812	8	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA|28aa|down_2|NZ_CP053592.1_4031634_4031718_-	NA|357aa|up_9|NZ_CP053592.1_4013806_4014877_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP053592.1_4014969_4015551_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP053592.1_4015555_4017373_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP053592.1_4017528_4018902_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP053592.1_4018977_4020297_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP053592.1_4020703_4021999_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP053592.1_4022056_4022746_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP053592.1_4022935_4024138_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP053592.1_4024134_4027281_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP053592.1_4027406_4028591_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP053592.1_4028835_4029744_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP053592.1_4029868_4030780_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP053592.1_4031634_4031718_-	NA	NA|95aa|down_3|NZ_CP053592.1_4032203_4032488_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP053592.1_4032559_4033237_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP053592.1_4033494_4033686_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP053592.1_4033735_4034260_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP053592.1_4034442_4034901_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP053592.1_4035020_4035830_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP053592.1_4035846_4036962_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	9	4152482-4152578	9	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Unclear	GCCAGCGTCGCATCAGGCATCCGCGCA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|153aa|up_9|NZ_CP053592.1_4144360_4144819_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_8|NZ_CP053592.1_4145079_4146537_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|186aa|up_7|NZ_CP053592.1_4146593_4147151_-	PRK08179, prfH, peptide chain release factor-like protein; Reviewed	NA|89aa|up_6|NZ_CP053592.1_4147062_4147329_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_5|NZ_CP053592.1_4147562_4148015_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|133aa|up_4|NZ_CP053592.1_4148024_4148423_-	PRK09885, PRK09885, type II toxin-antitoxin system YafO family toxin	NA|98aa|up_3|NZ_CP053592.1_4148425_4148719_-	PRK09778, PRK09778, type I toxin-antitoxin system antitoxin YafN	NA|352aa|up_2|NZ_CP053592.1_4148770_4149826_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|262aa|up_1|NZ_CP053592.1_4149896_4150682_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP053592.1_4150626_4152366_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP053592.1_4152581_4153079_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|258aa|down_1|NZ_CP053592.1_4153254_4154028_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|87aa|down_2|NZ_CP053592.1_4154213_4154474_+	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair]	NA|93aa|down_3|NZ_CP053592.1_4154476_4154755_+	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown]	NA|247aa|down_4|NZ_CP053592.1_4154910_4155651_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_5|NZ_CP053592.1_4155621_4156389_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_6|NZ_CP053592.1_4156594_4157173_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_7|NZ_CP053592.1_4157412_4159857_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_8|NZ_CP053592.1_4159899_4160373_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_9|NZ_CP053592.1_4160526_4161297_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	10	4360080-4360212	4	PILER-CR	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|126aa|up_9|NZ_CP053592.1_4350785_4351163_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP053592.1_4351169_4352012_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP053592.1_4352089_4352569_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP053592.1_4352760_4354623_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP053592.1_4354615_4355146_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP053592.1_4355253_4356585_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP053592.1_4356641_4356929_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP053592.1_4356925_4358212_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP053592.1_4358262_4359204_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP053592.1_4359218_4359989_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP053592.1_4360462_4361977_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP053592.1_4362007_4363150_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|down_2|NZ_CP053592.1_4364568_4366122_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_3|NZ_CP053592.1_4366230_4367016_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_4|NZ_CP053592.1_4367021_4367612_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_5|NZ_CP053592.1_4367820_4368216_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_6|NZ_CP053592.1_4368477_4371699_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_7|NZ_CP053592.1_4371716_4372865_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_8|NZ_CP053592.1_4373320_4374142_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_9|NZ_CP053592.1_4374308_4375223_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional
GCF_013166855.1_ASM1316685v1	NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	11	4367650-4367791	10	CRISPRCasFinder	no		DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,DinG,c2c9_V-U4,RT	NA,NA	NA|444aa|up_9|NZ_CP053592.1_4355253_4356585_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_8|NZ_CP053592.1_4356641_4356929_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_7|NZ_CP053592.1_4356925_4358212_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_6|NZ_CP053592.1_4358262_4359204_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_5|NZ_CP053592.1_4359218_4359989_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_4|NZ_CP053592.1_4360462_4361977_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_3|NZ_CP053592.1_4362007_4363150_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|518aa|up_2|NZ_CP053592.1_4364568_4366122_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP053592.1_4366230_4367016_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP053592.1_4367021_4367612_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP053592.1_4367820_4368216_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP053592.1_4368477_4371699_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP053592.1_4371716_4372865_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP053592.1_4373320_4374142_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP053592.1_4374308_4375223_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP053592.1_4375288_4376239_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP053592.1_4376240_4376690_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP053592.1_4376814_4377309_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP053592.1_4377308_4380125_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP053592.1_4380167_4381109_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
