The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	15443	88191	4476260	holin,tRNA,transposase,protease	uncultured_Caudovirales_phage(12.5%)	58	NA	NA
WP_001300563.1|15443_16556_+|transposase	IS4-like element IS421 family transposase	transposase	NA	NA	NA	NA
WP_000935262.1|16749_16959_-	type I toxin-antitoxin system toxin MokC	NA	A0A0P0ZAX5	Stx2-converting_phage	73.9	8.0e-19
WP_000681360.1|17488_18655_+	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	50.3	7.5e-90
WP_001300855.1|18720_19620_+	transcriptional activator NhaR	NA	NA	NA	NA	NA
WP_000871665.1|19658_20618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000555341.1|24126_24384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001283626.1|26133_26655_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA	NA
WP_001068910.1|26651_27605_+	fec operon regulator FecR	NA	NA	NA	NA	NA
WP_000188262.1|27691_30016_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA	NA
WP_000879164.1|30060_30963_+	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA	NA
WP_000125187.1|30959_31958_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA	NA
WP_000684856.1|31954_32911_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.1	1.1e-17
WP_000175457.1|32911_33679_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	NA	G3M9Y6	Bacillus_virus	24.8	6.4e-13
WP_000177057.1|34235_34493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085947616.1|35426_36582_+|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	45.1	3.6e-68
WP_001293436.1|36736_38734_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	25.9	7.4e-21
WP_000625671.1|38796_39210_+	DUF2254 domain-containing protein	NA	NA	NA	NA	NA
WP_085948656.1|39144_40312_-|transposase	IS3-like element IS911 family transposase	transposase	Q716C2	Shigella_phage	99.3	1.8e-184
WP_000254999.1|40625_40883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000594405.1|40935_41061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611568.1|41103_42222_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_000179691.1|42233_43451_-	MFS transporter	NA	NA	NA	NA	NA
WP_000483767.1|44059_45406_+|transposase	IS4-like element IS4 family transposase	transposase	NA	NA	NA	NA
WP_000050905.1|45433_45577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001318460.1|49963_50983_+	NADPH-dependent aldehyde reductase Ahr	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.7	1.4e-44
WP_000896738.1|50986_51550_-	gluconokinase	NA	NA	NA	NA	NA
WP_001197411.1|51766_52798_+	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000998695.1|52821_53586_+	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_001128347.1|53648_54968_+	gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
WP_001309159.1|55034_56033_+	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA	NA
WP_001294573.1|56110_57613_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.2	4.6e-84
WP_001295681.1|57773_58856_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_000584114.1|58855_59956_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_000397144.1|60222_61734_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.0	6.0e-47
WP_000786393.1|62087_62531_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_000416403.1|62530_65386_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	36.7	1.3e-140
WP_000079628.1|65441_66638_-	DUF898 domain-containing protein	NA	NA	NA	NA	NA
WP_001059397.1|66830_67334_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000002953.1|67379_67796_-	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_000012907.1|67957_68962_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000036440.1|69034_70687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001319730.1|70809_71262_-	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA	NA
WP_001319729.1|71406_72000_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000500685.1|72070_72784_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_000230274.1|72914_73310_+	RidA family protein	NA	NA	NA	NA	NA
WP_001296693.1|73590_73725_+	pyr operon leader peptide	NA	NA	NA	NA	NA
WP_000013046.1|73728_74664_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	40.2	2.9e-52
WP_000148581.1|74676_75138_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_000047539.1|75210_75597_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_000471889.1|75802_78499_-	magnesium-translocating P-type ATPase	NA	M1HLC0	Paramecium_bursaria_Chlorella_virus	27.4	9.0e-46
WP_001387276.1|78639_78693_-	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA	NA
WP_001181324.1|78877_79825_+	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	21.8	7.9e-13
WP_001297258.1|79943_81365_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA	NA
WP_001320168.1|81414_83070_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA	NA
WP_000187778.1|83463_85602_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.5	1.5e-266
WP_001106238.1|85760_86225_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	K4F9T1	Cronobacter_phage	57.1	1.1e-52
WP_001232240.1|86269_86656_-	cytochrome b562	NA	NA	NA	NA	NA
WP_001162160.1|86838_88191_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
>prophage 2
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	1720791	1733974	4476260		Escherichia_phage(50.0%)	12	NA	NA
WP_001295182.1|1720791_1721553_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.0	3.4e-59
WP_000254708.1|1721546_1722173_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.7	5.7e-36
WP_001272590.1|1722312_1723452_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	1.7e-06
WP_000081550.1|1723514_1724507_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
WP_000104459.1|1724600_1725965_-	GntP family transporter	NA	NA	NA	NA	NA
WP_001136925.1|1726053_1726830_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_001278994.1|1726834_1727473_-	aldolase	NA	A0A077SK32	Escherichia_phage	75.0	1.4e-82
WP_000590371.1|1727469_1728732_-	four-carbon acid sugar kinase family protein	NA	A0A077SLJ7	Escherichia_phage	61.4	4.9e-135
WP_000847971.1|1728728_1729637_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	76.5	5.1e-118
WP_001295181.1|1729832_1730600_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	56.7	2.5e-70
WP_001141307.1|1730650_1731307_-	protein-serine/threonine phosphatase	NA	A0A077SLQ6	Escherichia_phage	46.6	8.6e-51
WP_001272928.1|1731412_1733974_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	20.6	3.0e-30
>prophage 3
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	2318762	2328204	4476260		Enterobacteria_phage(85.71%)	10	NA	NA
WP_000569344.1|2318762_2319689_+	glycine betaine ABC transporter ATP binding protein YehX	NA	G3M9Y6	Bacillus_virus	30.8	1.3e-23
WP_000783120.1|2319693_2320425_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA	NA
WP_001216966.1|2320405_2320513_-	protein YohO	NA	NA	NA	NA	NA
WP_001240403.1|2320572_2321304_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	99.5	9.7e-112
WP_001295431.1|2321525_2323211_+	two-component regulatory system sensor histidine kinase BtsS	NA	Q9EYF3	Enterobacteria_phage	99.6	2.5e-304
WP_000598641.1|2323207_2323927_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_001295430.1|2323973_2324444_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	100.0	1.8e-82
WP_001296231.1|2324484_2324946_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	99.3	3.2e-76
WP_001300967.1|2325070_2327071_-	SWIM zinc finger family protein	NA	Q9EYF6	Enterobacteria_phage	96.6	0.0e+00
WP_001300968.1|2327067_2328204_-	VWA domain-containing protein	NA	Q9EYF7	Enterobacteria_phage	97.4	3.2e-162
>prophage 4
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	2420388	2429245	4476260		Enterobacteria_phage(42.86%)	8	NA	NA
WP_001115981.1|2420388_2421783_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	33.5	1.3e-19
WP_000183060.1|2421957_2422851_+	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	42.0	1.0e-46
WP_000699450.1|2423223_2424309_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	3.9e-101
WP_001023616.1|2424308_2425208_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.5	8.2e-28
WP_000857508.1|2425266_2426145_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.1	8.7e-107
WP_001100801.1|2426149_2426695_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	53.9	1.6e-47
WP_001060532.1|2426698_2428123_+	O7 family O-antigen flippase	NA	NA	NA	NA	NA
WP_000998544.1|2428132_2429245_+	dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA	NA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	25.7	1.3e-14
>prophage 5
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	2840944	2856567	4476260	transposase	Escherichia_phage(18.75%)	23	NA	NA
WP_000379591.1|2840944_2841097_-	DUF1391 family protein	NA	M4QQ57	Salicola_phage	53.2	6.6e-07
WP_000381212.1|2841265_2841673_-	helix-turn-helix domain-containing protein	NA	I6PD69	Cronobacter_phage	51.9	7.2e-32
WP_000921596.1|2841753_2841981_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000705360.1|2841964_2842486_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000054497.1|2842466_2843432_+	hypothetical protein	NA	U5P0A0	Shigella_phage	60.2	5.0e-55
WP_000887491.1|2844036_2844249_+	type I toxin-antitoxin system Hok family toxin	NA	A0A0U2QV81	Escherichia_phage	97.1	1.7e-29
WP_000981003.1|2844465_2844717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012775982.1|2844783_2845062_+	hypothetical protein	NA	I6PCV7	Cronobacter_phage	48.4	5.7e-12
WP_001265279.1|2845063_2845714_+	DUF968 domain-containing protein	NA	Q8SBE5	Shigella_phage	70.3	2.6e-68
WP_001204787.1|2845731_2846109_+	antitermination protein	NA	Q777W5	Enterobacteria_phage	82.5	1.8e-53
WP_000780584.1|2846264_2846789_-	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	52.9	1.0e-46
WP_085947598.1|2847158_2848321_-|transposase	IS3-like element IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.6	4.0e-51
WP_164979075.1|2848344_2848521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000896277.1|2848548_2848710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000879385.1|2849029_2850283_+	hypothetical protein	NA	A0A0E3M194	Enterobacteria_phage	54.3	3.7e-127
WP_001205170.1|2850282_2850564_+	hypothetical protein	NA	A0A1X7QHA1	Escherichia_phage	47.8	4.5e-17
WP_000235975.1|2850573_2851278_+	hypothetical protein	NA	A0A1X7QGH6	Escherichia_phage	62.3	5.4e-59
WP_000355603.1|2851288_2851582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000086527.1|2851809_2852400_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000836768.1|2852715_2852949_-	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_120795384.1|2853017_2853131_-	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000347482.1|2853734_2855018_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_000527826.1|2855106_2856567_+	mannitol dehydrogenase family protein	NA	G8DCZ3	Micromonas_pusilla_virus	29.3	2.8e-41
>prophage 6
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	3022864	3043586	4476260	tRNA,lysis	Escherichia_phage(34.78%)	29	NA	NA
WP_000837924.1|3022864_3023998_+	porin OmpN	NA	Q1MVN1	Enterobacteria_phage	58.8	8.3e-118
WP_001300461.1|3024138_3024573_+	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.8	1.8e-28
WP_001157925.1|3024838_3025012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_120795384.1|3025351_3025465_+	Rac prophage; protein YnaM	NA	A0A1C9IHU6	Salmonella_phage	80.6	8.4e-07
WP_000836768.1|3025533_3025767_+	cold shock protein YdfK	NA	A0A192Y6D5	Salmonella_phage	88.3	1.1e-32
WP_000078178.1|3026083_3026674_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	38.8	1.6e-24
WP_000355360.1|3026901_3027195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000654171.1|3027207_3027486_-	hypothetical protein	NA	A0A0E3JSQ1	Enterobacteria_phage	55.4	2.9e-24
WP_012775984.1|3028167_3028563_-	ParB N-terminal domain-containing protein	NA	A0A0R6PD10	Moraxella_phage	58.7	3.1e-19
WP_001097897.1|3028700_3030158_-	potassium transporter TrkG	NA	NA	NA	NA	NA
WP_001228696.1|3030354_3030540_-|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.2	2.8e-15
WP_000992105.1|3030756_3031290_-	lysozyme	NA	K7PLY1	Enterobacteria_phage	96.0	4.8e-100
WP_000370546.1|3031395_3031668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193293.1|3031633_3031978_-	YdfR family protein	NA	K7PGU6	Enterobacteria_phage	94.0	1.4e-36
WP_012775985.1|3031982_3032195_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	96.9	3.0e-29
WP_001169151.1|3032338_3032494_+	YdaF family protein	NA	M4QQ57	Salicola_phage	55.3	6.1e-08
WP_001312793.1|3032490_3032979_-	superinfection exclusion protein B	NA	NA	NA	NA	NA
WP_000560223.1|3033420_3033642_+	killing protein KilR	NA	A0A0U2RTC4	Escherichia_phage	98.6	2.0e-36
WP_001352098.1|3033641_3033812_+	conserved protein, Rac prophage	NA	A0A0U2SHB5	Escherichia_phage	71.4	3.6e-17
WP_000632297.1|3033886_3034162_+	protein RacC	NA	A0A0U2QW85	Escherichia_phage	96.7	1.4e-42
WP_000166319.1|3035355_3036165_+	recombination protein RecT	NA	A0A1P8DTF2	Proteus_phage	71.5	8.8e-106
WP_001317028.1|3036221_3036416_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	NA	A0A0U2QQP4	Escherichia_phage	96.9	5.8e-32
WP_000276809.1|3036408_3036618_+	double-strand break reduction protein RcbA	NA	A0A0U2QL97	Escherichia_phage	98.4	6.1e-27
WP_000079604.1|3036696_3036912_+	excisionase XisR	NA	A0A0U2RY08	Escherichia_phage	100.0	1.8e-37
WP_000040858.1|3036913_3038149_+	DUF3596 domain-containing protein	NA	A0A0U2JGI6	Escherichia_phage	98.5	1.6e-239
WP_001157407.1|3038200_3039136_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	98.8	5.9e-146
WP_000123737.1|3039264_3040638_-	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.1	6.6e-53
WP_000387388.1|3041115_3042099_-	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_001301114.1|3042353_3043586_+	diguanylate cyclase DgcM	NA	A0A127AWB9	Bacillus_phage	35.0	3.1e-17
>prophage 7
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	3490314	3563627	4476260	tail,terminase,plate,capsid,tRNA,protease,integrase,portal,lysis	Salmonella_phage(35.14%)	71	3483277:3483292	3566714:3566729
3483277:3483292	attL	GTTACCGCCATCGCCA	NA	NA	NA	NA
WP_000886683.1|3490314_3491607_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.2	1.5e-94
WP_000067755.1|3491697_3493041_-	replication-associated recombination protein RarA	NA	G3MBE0	Bacillus_virus	40.8	2.1e-80
WP_001295343.1|3493051_3493663_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_000077053.1|3493817_3497846_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	48.7	1.2e-86
WP_000228473.1|3497980_3498475_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
WP_000537418.1|3499019_3499985_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.6	8.5e-63
WP_001043577.1|3500107_3501874_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	24.3	7.0e-23
WP_001202189.1|3501874_3503596_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	25.2	2.9e-21
WP_001241678.1|3503637_3504342_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_001040187.1|3504626_3504845_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_000934045.1|3505882_3508159_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	2.5e-166
WP_000520781.1|3508189_3508510_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	1.6e-13
WP_000410785.1|3508832_3509057_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	61.2	2.3e-16
WP_000188180.1|3509129_3511076_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	40.1	1.1e-37
WP_000746443.1|3511072_3512188_-	macrolide transporter subunit MacA	NA	NA	NA	NA	NA
WP_001355621.1|3512338_3513295_+	VirK/YbjX family protein	NA	NA	NA	NA	NA
WP_000599802.1|3513291_3514950_-	ATP-dependent endonuclease	NA	NA	NA	NA	NA
WP_001298299.1|3515374_3516070_+	aquaporin Z	NA	NA	NA	NA	NA
WP_000491142.1|3516564_3517464_+	L-lysine exporter LysO	NA	NA	NA	NA	NA
WP_000458809.1|3517607_3519260_+	hydroxylamine reductase	NA	NA	NA	NA	NA
WP_000178677.1|3519271_3520240_+	NADH oxidoreductase	NA	NA	NA	NA	NA
WP_000815335.1|3520372_3522091_+	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.0	2.3e-31
WP_000566356.1|3522127_3523129_+	low-specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_001136577.1|3523139_3524570_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_001338420.1|3524668_3525682_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_001255168.1|3525678_3526509_-	N-acetylmuramoyl-L-alanine amidase AmiD	NA	A0A1B0UZW5	Roseobacter_phage	30.0	5.7e-07
WP_001160737.1|3526505_3526829_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001270734.1|3526954_3527470_+	lipoprotein	NA	NA	NA	NA	NA
WP_000027205.1|3527687_3528416_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	36.7	6.0e-29
WP_000756569.1|3528433_3529165_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001001691.1|3529171_3529888_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA	NA
WP_000464491.1|3529887_3530556_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA	NA
WP_001295905.1|3530846_3531578_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001149743.1|3531776_3532904_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	27.0	6.0e-28
WP_000389260.1|3532944_3533433_-	YbjO family protein	NA	NA	NA	NA	NA
WP_001061667.1|3533492_3534338_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
WP_000105444.1|3534334_3535288_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
WP_000996005.1|3535297_3536431_-	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.0	1.4e-29
WP_000126069.1|3536525_3537638_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
WP_000203025.1|3537988_3538465_-	YbjN domain-containing protein	NA	NA	NA	NA	NA
WP_000684321.1|3538552_3539455_-	30S ribosomal protein S6--L-glutamate ligase	NA	I3ULC9	Synechococcus_phage	34.4	2.6e-37
WP_000189159.1|3539515_3540238_-	nitroreductase NfsA	NA	NA	NA	NA	NA
WP_001201560.1|3540221_3540509_-	DUF1418 family protein	NA	NA	NA	NA	NA
WP_001195240.1|3540668_3540926_+	glutaredoxin 1	NA	A0A2I7SAE2	Vibrio_phage	61.9	8.6e-23
WP_000681108.1|3540955_3541333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001024876.1|3541602_3543288_+	aspartate:alanine antiporter	NA	NA	NA	NA	NA
WP_000972391.1|3543523_3543742_-	ogr/Delta-like zinc finger family protein	NA	Q53ZE7	Salmonella_virus	69.0	7.5e-20
WP_012767713.1|3544500_3545043_+|tail	tail fiber protein	tail	A0A0F7LCR3	Escherichia_phage	62.5	1.9e-56
WP_000368077.1|3545042_3545645_+|tail	tail fiber assembly protein	tail	M1SV83	Escherichia_phage	89.5	2.3e-98
WP_000280166.1|3545616_3546054_-|tail	tail assembly chaperone	tail	A0A0F7LDZ0	Escherichia_phage	75.0	1.7e-55
WP_000104800.1|3546055_3547678_-|tail	phage tail protein	tail	M1TAS6	Escherichia_phage	78.5	6.2e-151
WP_001086815.1|3547674_3548280_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	93.0	2.3e-111
WP_000268294.1|3548272_3549181_-|plate	baseplate assembly protein	plate	A0A1S6KZY6	Salmonella_phage	91.1	4.1e-144
WP_000177591.1|3549167_3549527_-	GPW/gp25 family protein	NA	A0A1S6KZZ4	Salmonella_phage	85.7	8.0e-51
WP_000993743.1|3549523_3550102_-|plate	phage baseplate assembly protein V	plate	A0A1S6KZX7	Salmonella_phage	85.9	3.6e-93
WP_000115390.1|3550205_3551012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000829156.1|3550953_3551400_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	83.7	7.6e-59
WP_001039932.1|3551392_3551824_-|tail	phage tail protein	tail	E5G6N3	Salmonella_phage	93.0	3.8e-71
WP_000196203.1|3551919_3552348_-|lysis	LysB family phage lysis regulatory protein	lysis	E5G6N2	Salmonella_phage	88.7	8.1e-58
WP_000216259.1|3552484_3553237_-|capsid	GPO family capsid scaffolding protein	capsid	A0A1S6KZW9	Salmonella_phage	94.7	3.1e-113
WP_001098413.1|3553379_3555146_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	99.1	0.0e+00
WP_000520360.1|3555145_3556171_+|portal	phage portal protein	portal	A0A1S6KZW5	Salmonella_phage	86.7	7.6e-171
WP_001320043.1|3556188_3557151_-	RNA-directed DNA polymerase	NA	NA	NA	NA	NA
WP_001034589.1|3557313_3558237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001059831.1|3558709_3559045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217575.1|3559237_3559471_-	DinI family protein	NA	E5G6M1	Salmonella_phage	100.0	4.7e-36
WP_001154431.1|3559481_3559670_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	96.8	1.6e-26
WP_001247707.1|3561300_3561522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001047321.1|3561647_3562217_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	43.4	3.8e-39
WP_001321204.1|3562232_3562424_+	hypothetical protein	NA	A0A0R6PIH8	Moraxella_phage	68.2	4.0e-09
WP_000290930.1|3562610_3563627_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	56.7	3.2e-105
3566714:3566729	attR	TGGCGATGGCGGTAAC	NA	NA	NA	NA
>prophage 8
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	3648395	3656806	4476260	integrase,tail,terminase	Escherichia_phage(44.44%)	11	3644790:3644804	3656880:3656894
3644790:3644804	attL	TTAGTATAAAAAAGC	NA	NA	NA	NA
WP_000204789.1|3648395_3649421_+	acyltransferase	NA	G9L6E5	Escherichia_phage	28.9	2.4e-15
WP_001104982.1|3649462_3649858_-|tail	tail fiber assembly protein	tail	A0A0M4S6V4	Salmonella_phage	36.6	1.6e-12
WP_001130801.1|3651126_3652749_-	hypothetical protein	NA	A0A0M5M1R6	Salmonella_phage	95.4	0.0e+00
WP_001218995.1|3652751_3653303_-|terminase	terminase small subunit	terminase	G0ZND3	Cronobacter_phage	69.8	7.2e-67
WP_001472362.1|3653256_3653871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000113283.1|3654003_3654189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000376718.1|3654698_3654983_+	DUF4752 family protein	NA	G9L657	Escherichia_phage	94.7	3.2e-47
WP_000002107.1|3654975_3655260_+	ASCH domain-containing protein	NA	A0A2D1GLL3	Escherichia_phage	100.0	1.8e-50
WP_000545729.1|3655332_3655500_+	hypothetical protein	NA	A0A0K2FJ46	Enterobacteria_phage	96.4	2.9e-27
WP_001303849.1|3655539_3655758_+	excisionase	NA	Q77WA4	Escherichia_phage	100.0	3.7e-35
WP_000533643.1|3655735_3656806_+|integrase	tyrosine-type recombinase/integrase	integrase	K7P6P6	Enterobacteria_phage	100.0	3.9e-202
3656880:3656894	attR	TTAGTATAAAAAAGC	NA	NA	NA	NA
>prophage 9
NZ_CP053592	Escherichia coli strain NEBExpress_Iq chromosome, complete genome	4476260	3857667	3871382	4476260	integrase,lysis	Enterobacteria_phage(62.5%)	21	3865285:3865298	3872602:3872615
WP_001415975.1|3857667_3857862_+	YlcI/YnfO family protein	NA	A0A0K2FIR8	Escherichia_phage	96.9	4.3e-27
WP_000738423.1|3858222_3858516_+	increased serum survival lipoprotein Iss	NA	K7PL54	Enterobacteria_phage	91.8	2.0e-44
WP_001228695.1|3858606_3858789_-|lysis	prophage lysis lipoprotein RzoD	lysis	K7PHU6	Enterobacteria_phage	98.3	2.9e-17
WP_001135280.1|3859005_3859503_-	lysozyme RrrD	NA	M1FJA0	Enterobacteria_phage	97.6	1.1e-90
WP_000839596.1|3859502_3859718_-|lysis	phage lysis protein EssD	lysis	A5LH82	Enterobacteria_phage	100.0	9.0e-34
WP_001204780.1|3862355_3862739_-	antitermination protein QuuD	NA	A0A088CD47	Shigella_phage	84.2	4.0e-56
WP_000971071.1|3862824_3862965_-	YlcG family protein	NA	K7PHH3	Enterobacteria_phage	69.8	2.5e-08
WP_001099655.1|3862961_3863324_-	RusA family crossover junction endodeoxyribonuclease	NA	K7PM48	Enterobacteria_phage	97.4	7.3e-60
WP_000774479.1|3863320_3863611_-	DUF1364 domain-containing protein	NA	K7PGZ6	Enterobacteria_phage	95.8	2.3e-48
WP_000224907.1|3863603_3863774_-	hypothetical protein	NA	K7P7K0	Enterobacteria_phage	67.9	5.3e-13
WP_001054340.1|3863773_3864229_-	DNA base-flipping protein YbcN	NA	I6PD71	Cronobacter_phage	66.9	4.1e-60
WP_001303586.1|3864225_3864327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000881075.1|3864443_3865241_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001306955.1|3865250_3865802_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA	NA
3865285:3865298	attL	GTTGCGATTTTATT	NA	NA	NA	NA
WP_000709082.1|3866266_3867793_-	recombinase family protein	NA	Q3HQV4	Burkholderia_phage	27.8	7.9e-31
WP_001299444.1|3867850_3868000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001070454.1|3868047_3868380_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA	NA
WP_001386642.1|3869095_3869377_+	cell division protein ZapA	NA	A0A0P0ZE02	Stx2-converting_phage	98.9	5.5e-47
WP_000763373.1|3869475_3869694_+	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	95.8	1.8e-34
WP_000488419.1|3869741_3870020_+	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	98.9	1.7e-48
WP_001318654.1|3870218_3871382_+|integrase	site-specific integrase	integrase	A0A088CD23	Shigella_phage	86.0	1.3e-198
3872602:3872615	attR	AATAAAATCGCAAC	NA	NA	NA	NA
>prophage 1
NZ_CP053593	Escherichia coli strain NEBExpress_Iq plasmid pMiniF_lacIq, complete sequence	7606	57	6817	7606	integrase	Macacine_betaherpesvirus(66.67%)	6	1272:1283	4510:4521
WP_000805902.1|57_1140_-	DNA-binding transcriptional repressor LacI	NA	C6ZCU4	Enterobacteria_phage	100.0	7.5e-193
1272:1283	attL	CTTATTATCACT	NA	NA	NA	NA
WP_000412211.1|1337_1997_-	type A-1 chloramphenicol O-acetyltransferase	NA	G3CFL0	Escherichia_phage	100.0	8.4e-131
WP_171831280.1|2050_2563_+|integrase	tyrosine-type recombinase/integrase	integrase	I3WFA4	Macacine_betaherpesvirus	100.0	4.8e-57
WP_000852146.1|3336_4092_+	replication initiation protein RepE	NA	I3WF20	Macacine_betaherpesvirus	100.0	3.8e-143
WP_000772446.1|4679_5846_+	plasmid-partitioning protein SopA	NA	A0A2I6B2X3	Macacine_betaherpesvirus	100.0	7.0e-229
4510:4521	attR	AGTGATAATAAG	NA	NA	NA	NA
WP_000817031.1|5845_6817_+	ParB/RepB/Spo0J family plasmid partition protein	NA	I3WF22	Macacine_betaherpesvirus	100.0	4.8e-175
