assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	1	1530986-1531482	1	CRT	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	NCANGGCTACGGCCAGCAG	19	0	0	NA	NA	NA	8	8	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA|101aa|up_2|NZ_CP053564.1_1529000_1529303_+,NA	NA|231aa|up_9|NZ_CP053564.1_1523326_1524019_+	cd02588, HAD_L2-DEX, L-2-haloacid dehalogenase	NA|159aa|up_8|NZ_CP053564.1_1524168_1524645_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|249aa|up_7|NZ_CP053564.1_1524661_1525408_-	pfam08241, Methyltransf_11, Methyltransferase domain	NA|378aa|up_6|NZ_CP053564.1_1525404_1526538_-	PRK06520, PRK06520, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	NA|281aa|up_5|NZ_CP053564.1_1526585_1527428_+	TIGR03619, F420_Rv2161c, probable F420-dependent oxidoreductase, Rv2161c family	NA|263aa|up_4|NZ_CP053564.1_1527475_1528264_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|219aa|up_3|NZ_CP053564.1_1528283_1528940_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|101aa|up_2|NZ_CP053564.1_1529000_1529303_+	NA	NA|81aa|up_1|NZ_CP053564.1_1529322_1529565_+	pfam10944, DUF2630, Protein of unknown function (DUF2630)	NA|205aa|up_0|NZ_CP053564.1_1529570_1530185_+	PRK06696, PRK06696, uridine kinase; Validated	NA|155aa|down_0|NZ_CP053564.1_1531759_1532224_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|444aa|down_1|NZ_CP053564.1_1532270_1533602_+	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|474aa|down_2|NZ_CP053564.1_1533603_1535025_+	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning]	NA|492aa|down_3|NZ_CP053564.1_1535021_1536497_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|408aa|down_4|NZ_CP053564.1_1536582_1537806_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|641aa|down_5|NZ_CP053564.1_1537912_1539835_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|212aa|down_6|NZ_CP053564.1_1539862_1540498_+	PRK07765, PRK07765, aminodeoxychorismate/anthranilate synthase component II	NA|90aa|down_7|NZ_CP053564.1_1540580_1540850_+	PRK00159, PRK00159, putative septation inhibitor protein; Reviewed	NA|149aa|down_8|NZ_CP053564.1_1540912_1541359_+	pfam10756, bPH_6, Bacterial PH domain	NA|287aa|down_9|NZ_CP053564.1_1541344_1542205_-	pfam01694, Rhomboid, Rhomboid family
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	2	2727641-2727738	1	CRISPRCasFinder	no	csa3	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Type I-A	CGGTGATCACCGGCTCGTGATCGTCG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA|158aa|up_9|NZ_CP053564.1_2718939_2719413_-,NA|69aa|up_0|NZ_CP053564.1_2726905_2727112_+,NA	NA|158aa|up_9|NZ_CP053564.1_2718939_2719413_-	NA	NA|547aa|up_8|NZ_CP053564.1_2719462_2721103_-	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|430aa|up_7|NZ_CP053564.1_2721209_2722499_+	pfam13941, MutL, MutL protein	NA|152aa|up_6|NZ_CP053564.1_2722515_2722971_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|171aa|up_5|NZ_CP053564.1_2722967_2723480_-	TIGR02983, putative_RNA_polymerase_ECF-subfamily_sigma_factor, RNA polymerase sigma-70 factor, sigma-E family	NA|187aa|up_4|NZ_CP053564.1_2723476_2724037_-	cd05829, Sortase_F, Sortase domain found in the class F family of sortases	NA|120aa|up_3|NZ_CP053564.1_2724033_2724393_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|501aa|up_2|NZ_CP053564.1_2724681_2726184_+	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|142aa|up_1|NZ_CP053564.1_2726363_2726789_+	pfam07366, SnoaL, SnoaL-like polyketide cyclase	NA|69aa|up_0|NZ_CP053564.1_2726905_2727112_+	NA	NA|225aa|down_0|NZ_CP053564.1_2728626_2729301_+	PRK07933, PRK07933, dTMP kinase	NA|229aa|down_1|NZ_CP053564.1_2729308_2729995_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|585aa|down_2|NZ_CP053564.1_2730017_2731772_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|577aa|down_3|NZ_CP053564.1_2731768_2733499_+	PRK13616, PRK13616, MtrAB system accessory protein LpqB	NA|204aa|down_4|NZ_CP053564.1_2733723_2734335_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|222aa|down_5|NZ_CP053564.1_2734584_2735250_+	TIGR00741, Probable_sigma54_modulation_protein_ORF3_ORF95	NA|1002aa|down_6|NZ_CP053564.1_2735414_2738420_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|227aa|down_7|NZ_CP053564.1_2738499_2739180_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|126aa|down_8|NZ_CP053564.1_2739802_2740180_+	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED	NA|99aa|down_9|NZ_CP053564.1_2740258_2740555_-	pfam14013, MT0933_antitox, MT0933-like antitoxin protein
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	3	3361205-3361275	2	CRISPRCasFinder	no	csa3	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Type I-A	CCACTCACGGGTGCTCGTGAGCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA|82aa|up_5|NZ_CP053564.1_3356182_3356428_-,NA	NA|277aa|up_9|NZ_CP053564.1_3352775_3353606_-	COG1277, NosY, ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]	NA|303aa|up_8|NZ_CP053564.1_3353602_3354511_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|372aa|up_7|NZ_CP053564.1_3354581_3355697_-	cd16327, RseB, RseB, a sensor in periplasmic stress	NA|147aa|up_6|NZ_CP053564.1_3355745_3356186_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|82aa|up_5|NZ_CP053564.1_3356182_3356428_-	NA	NA|189aa|up_4|NZ_CP053564.1_3356432_3356999_-	smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain	NA|340aa|up_3|NZ_CP053564.1_3357055_3358075_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|384aa|up_2|NZ_CP053564.1_3358126_3359278_+	PRK14278, PRK14278, chaperone protein DnaJ; Provisional	NA|251aa|up_1|NZ_CP053564.1_3359283_3360036_+	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|290aa|up_0|NZ_CP053564.1_3360295_3361165_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|178aa|down_0|NZ_CP053564.1_3361290_3361824_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|430aa|down_1|NZ_CP053564.1_3361816_3363106_-	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|1285aa|down_2|NZ_CP053564.1_3363107_3366962_-	TIGR02353, NON-RIBOSOMAL_PEPTIDE_SYNTHETASE, non-ribosomal peptide synthetase terminal domain of unknown function	NA|339aa|down_3|NZ_CP053564.1_3367193_3368210_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|527aa|down_4|NZ_CP053564.1_3368294_3369875_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|408aa|down_5|NZ_CP053564.1_3369903_3371127_-	TIGR01678, D-arabinono-14-lactone_oxidase, sugar 1,4-lactone oxidases	NA|179aa|down_6|NZ_CP053564.1_3371168_3371705_+	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|449aa|down_7|NZ_CP053564.1_3371724_3373071_+	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|410aa|down_8|NZ_CP053564.1_3373067_3374297_+	PRK11728, PRK11728, L-2-hydroxyglutarate oxidase	NA|308aa|down_9|NZ_CP053564.1_3374370_3375294_+	PRK00089, era, GTPase Era; Reviewed
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	4	4760026-4760241	2	CRT	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	CCGCGTTCCGCGGAACGC	18	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA,NA|433aa|down_6|NZ_CP053564.1_4768403_4769702_+	NA|299aa|up_9|NZ_CP053564.1_4749905_4750802_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|270aa|up_8|NZ_CP053564.1_4750888_4751698_+	cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase supgroup	NA|660aa|up_7|NZ_CP053564.1_4751734_4753714_+	cd11324, AmyAc_Amylosucrase, Alpha amylase catalytic domain found in Amylosucrase	NA|223aa|up_6|NZ_CP053564.1_4753733_4754402_-	COG2013, COG2013, Uncharacterized conserved protein [Function unknown]	NA|216aa|up_5|NZ_CP053564.1_4754491_4755139_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|198aa|up_4|NZ_CP053564.1_4755150_4755744_-	pfam01987, AIM24, Mitochondrial biogenesis AIM24	NA|321aa|up_3|NZ_CP053564.1_4755823_4756786_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|333aa|up_2|NZ_CP053564.1_4756941_4757940_+	cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems	NA|244aa|up_1|NZ_CP053564.1_4757936_4758668_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|404aa|up_0|NZ_CP053564.1_4758667_4759879_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|294aa|down_0|NZ_CP053564.1_4761763_4762645_+	cd08946, SDR_e, extended (e) SDRs	NA|144aa|down_1|NZ_CP053564.1_4762718_4763150_+	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|320aa|down_2|NZ_CP053564.1_4763192_4764152_+	pfam01674, Lipase_2, Lipase (class 2)	NA|474aa|down_3|NZ_CP053564.1_4764138_4765560_-	PLN02880, PLN02880, tyrosine decarboxylase	NA|506aa|down_4|NZ_CP053564.1_4765578_4767096_-	PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated	NA|385aa|down_5|NZ_CP053564.1_4767231_4768386_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|433aa|down_6|NZ_CP053564.1_4768403_4769702_+	NA	NA|167aa|down_7|NZ_CP053564.1_4769779_4770280_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|114aa|down_8|NZ_CP053564.1_4770289_4770631_-	pfam11774, Lsr2, Lsr2	NA|217aa|down_9|NZ_CP053564.1_4770593_4771244_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	5	5011249-5011502	3	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	CCGGGTGGTCGTGCGTTCCGCGGAAC	26	0	0	NA	NA	NA	4	4	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA,NA	NA|308aa|up_9|NZ_CP053564.1_5001353_5002277_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|534aa|up_8|NZ_CP053564.1_5002286_5003888_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|283aa|up_7|NZ_CP053564.1_5003886_5004735_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|476aa|up_6|NZ_CP053564.1_5004731_5006159_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|394aa|up_5|NZ_CP053564.1_5006155_5007337_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|254aa|up_4|NZ_CP053564.1_5007362_5008124_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|421aa|up_3|NZ_CP053564.1_5008138_5009401_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|148aa|up_2|NZ_CP053564.1_5009402_5009846_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|116aa|up_1|NZ_CP053564.1_5009884_5010232_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|306aa|up_0|NZ_CP053564.1_5010280_5011198_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|484aa|down_0|NZ_CP053564.1_5012239_5013691_-	TIGR03356, BGL, beta-galactosidase	NA|247aa|down_1|NZ_CP053564.1_5013687_5014428_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|321aa|down_2|NZ_CP053564.1_5014571_5015534_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|441aa|down_3|NZ_CP053564.1_5015545_5016868_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|344aa|down_4|NZ_CP053564.1_5017014_5018046_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|274aa|down_5|NZ_CP053564.1_5018120_5018942_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|638aa|down_6|NZ_CP053564.1_5018941_5020855_-	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|406aa|down_7|NZ_CP053564.1_5020890_5022108_-	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|569aa|down_8|NZ_CP053564.1_5022139_5023846_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|979aa|down_9|NZ_CP053564.1_5023876_5026813_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	6	5011754-5011823	4	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	CCGGGTGGTCGTGCGTTCCGCGGAAC	26	1	2	5011780-5011797|5011780-5011797	NZ_CP053564.1_4487191-4487208|NZ_CP053564.1_4949713-4949730	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA,NA	NA|308aa|up_9|NZ_CP053564.1_5001353_5002277_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|534aa|up_8|NZ_CP053564.1_5002286_5003888_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|283aa|up_7|NZ_CP053564.1_5003886_5004735_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|476aa|up_6|NZ_CP053564.1_5004731_5006159_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|394aa|up_5|NZ_CP053564.1_5006155_5007337_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|254aa|up_4|NZ_CP053564.1_5007362_5008124_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|421aa|up_3|NZ_CP053564.1_5008138_5009401_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|148aa|up_2|NZ_CP053564.1_5009402_5009846_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|116aa|up_1|NZ_CP053564.1_5009884_5010232_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|306aa|up_0|NZ_CP053564.1_5010280_5011198_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|484aa|down_0|NZ_CP053564.1_5012239_5013691_-	TIGR03356, BGL, beta-galactosidase	NA|247aa|down_1|NZ_CP053564.1_5013687_5014428_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|321aa|down_2|NZ_CP053564.1_5014571_5015534_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|441aa|down_3|NZ_CP053564.1_5015545_5016868_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|344aa|down_4|NZ_CP053564.1_5017014_5018046_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|274aa|down_5|NZ_CP053564.1_5018120_5018942_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|638aa|down_6|NZ_CP053564.1_5018941_5020855_-	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|406aa|down_7|NZ_CP053564.1_5020890_5022108_-	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|569aa|down_8|NZ_CP053564.1_5022139_5023846_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|979aa|down_9|NZ_CP053564.1_5023876_5026813_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	7	5012080-5012203	1	PILER-CR	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	GCGTTCCGCGGAACGCACCGAACCG	25	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA,NA	NA|308aa|up_9|NZ_CP053564.1_5001353_5002277_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|534aa|up_8|NZ_CP053564.1_5002286_5003888_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|283aa|up_7|NZ_CP053564.1_5003886_5004735_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|476aa|up_6|NZ_CP053564.1_5004731_5006159_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|394aa|up_5|NZ_CP053564.1_5006155_5007337_+	TIGR01981, UPF0051_protein_Rv1462/MT1509, FeS assembly protein SufD	NA|254aa|up_4|NZ_CP053564.1_5007362_5008124_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|421aa|up_3|NZ_CP053564.1_5008138_5009401_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|148aa|up_2|NZ_CP053564.1_5009402_5009846_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	NA|116aa|up_1|NZ_CP053564.1_5009884_5010232_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|306aa|up_0|NZ_CP053564.1_5010280_5011198_+	pfam00296, Bac_luciferase, Luciferase-like monooxygenase	NA|484aa|down_0|NZ_CP053564.1_5012239_5013691_-	TIGR03356, BGL, beta-galactosidase	NA|247aa|down_1|NZ_CP053564.1_5013687_5014428_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|321aa|down_2|NZ_CP053564.1_5014571_5015534_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|441aa|down_3|NZ_CP053564.1_5015545_5016868_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|344aa|down_4|NZ_CP053564.1_5017014_5018046_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|274aa|down_5|NZ_CP053564.1_5018120_5018942_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|638aa|down_6|NZ_CP053564.1_5018941_5020855_-	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|406aa|down_7|NZ_CP053564.1_5020890_5022108_-	PRK14498, PRK14498, putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional	NA|569aa|down_8|NZ_CP053564.1_5022139_5023846_-	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion]	NA|979aa|down_9|NZ_CP053564.1_5023876_5026813_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	8	5417846-5417939	5	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	GCGCCTCCGGCACCCGTGAGTGG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA|61aa|up_9|NZ_CP053564.1_5408247_5408430_+,NA|163aa|down_6|NZ_CP053564.1_5423593_5424082_-	NA|61aa|up_9|NZ_CP053564.1_5408247_5408430_+	NA	NA|527aa|up_8|NZ_CP053564.1_5408603_5410184_+	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|112aa|up_7|NZ_CP053564.1_5410132_5410468_+	pfam11338, DUF3140, Protein of unknown function (DUF3140)	NA|66aa|up_6|NZ_CP053564.1_5411500_5411698_-	pfam11387, DUF2795, Protein of unknown function (DUF2795)	NA|385aa|up_5|NZ_CP053564.1_5411761_5412916_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|257aa|up_4|NZ_CP053564.1_5412927_5413698_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|319aa|up_3|NZ_CP053564.1_5413694_5414651_-	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	NA|313aa|up_2|NZ_CP053564.1_5414650_5415589_-	cd07239, BphC5-RK37_C_like, C-terminal, catalytic domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase)	NA|377aa|up_1|NZ_CP053564.1_5415607_5416738_-	PRK06847, PRK06847, hypothetical protein; Provisional	NA|330aa|up_0|NZ_CP053564.1_5416763_5417753_-	pfam04199, Cyclase, Putative cyclase	NA|252aa|down_0|NZ_CP053564.1_5417975_5418731_-	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|257aa|down_1|NZ_CP053564.1_5418796_5419567_+	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|260aa|down_2|NZ_CP053564.1_5419567_5420347_+	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only]	NA|576aa|down_3|NZ_CP053564.1_5420356_5422084_-	PRK08316, PRK08316, acyl-CoA synthetase; Validated	NA|254aa|down_4|NZ_CP053564.1_5422145_5422907_+	PRK06494, PRK06494, enoyl-CoA hydratase; Provisional	NA|216aa|down_5|NZ_CP053564.1_5422910_5423558_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|163aa|down_6|NZ_CP053564.1_5423593_5424082_-	NA	NA|154aa|down_7|NZ_CP053564.1_5424179_5424641_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|130aa|down_8|NZ_CP053564.1_5424771_5425161_+	cd00454, TrHb1_N, truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 1 (N)	NA|376aa|down_9|NZ_CP053564.1_5425247_5426375_-	TIGR03886, hypothetical_protein_SlinDRAFT_56750, spore photoproduct lyase family protein
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	9	5970738-5970844	6	CRISPRCasFinder	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	GTCACGTCACACTCCCGGCGATCAC	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA|106aa|up_7|NZ_CP053564.1_5962316_5962634_+,NA|62aa|up_0|NZ_CP053564.1_5969912_5970098_+,NA|109aa|down_8|NZ_CP053564.1_5980675_5981002_-,NA|100aa|down_9|NZ_CP053564.1_5980998_5981298_-	NA|269aa|up_9|NZ_CP053564.1_5960285_5961092_-	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|334aa|up_8|NZ_CP053564.1_5961100_5962102_-	pfam09084, NMT1, NMT1/THI5 like	NA|106aa|up_7|NZ_CP053564.1_5962316_5962634_+	NA	NA|392aa|up_6|NZ_CP053564.1_5962810_5963986_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|485aa|up_5|NZ_CP053564.1_5964029_5965484_-	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]	NA|258aa|up_4|NZ_CP053564.1_5965483_5966257_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|372aa|up_3|NZ_CP053564.1_5966327_5967443_-	cd19995, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems	NA|321aa|up_2|NZ_CP053564.1_5967690_5968653_+	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family	NA|271aa|up_1|NZ_CP053564.1_5968756_5969569_-	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|62aa|up_0|NZ_CP053564.1_5969912_5970098_+	NA	NA|558aa|down_0|NZ_CP053564.1_5971276_5972950_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|346aa|down_1|NZ_CP053564.1_5973114_5974152_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|567aa|down_2|NZ_CP053564.1_5974148_5975849_+	TIGR01839, Poly3-hydroxyalkanoate_polymerase_1, poly(R)-hydroxyalkanoic acid synthase, class II	NA|263aa|down_3|NZ_CP053564.1_5975878_5976667_+	TIGR02240, Poly3-hydroxyalkanoate_depolymerase, poly(3-hydroxyalkanoate) depolymerase	NA|208aa|down_4|NZ_CP053564.1_5978009_5978633_-	pfam13489, Methyltransf_23, Methyltransferase domain	NA|83aa|down_5|NZ_CP053564.1_5978658_5978907_-	pfam11238, DUF3039, Protein of unknown function (DUF3039)	NA|313aa|down_6|NZ_CP053564.1_5978905_5979844_+	pfam04227, Indigoidine_A, Indigoidine synthase A like protein	NA|282aa|down_7|NZ_CP053564.1_5979840_5980686_+	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP)	NA|109aa|down_8|NZ_CP053564.1_5980675_5981002_-	NA	NA|100aa|down_9|NZ_CP053564.1_5980998_5981298_-	NA
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	10	6008198-6008294	7	CRISPRCasFinder	no	csa3,DEDDh	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Type I-A	CGCGGACCATCAGCCCTTGATCG	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA|117aa|up_0|NZ_CP053564.1_6007354_6007705_-,NA|202aa|down_3|NZ_CP053564.1_6011932_6012538_+	NA|142aa|up_9|NZ_CP053564.1_5997966_5998392_+	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|485aa|up_8|NZ_CP053564.1_5998518_5999973_+	pfam02720, DUF222, Domain of unknown function (DUF222)	NA|125aa|up_7|NZ_CP053564.1_6000677_6001052_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|588aa|up_6|NZ_CP053564.1_6001076_6002840_-	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I	NA|308aa|up_5|NZ_CP053564.1_6003056_6003980_+	TIGR01836, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit	NA|141aa|up_4|NZ_CP053564.1_6003889_6004312_+	COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]	NA|314aa|up_3|NZ_CP053564.1_6004609_6005551_+	PRK07921, PRK07921, RNA polymerase sigma factor SigB; Reviewed	NA|320aa|up_2|NZ_CP053564.1_6005559_6006519_+	cd19098, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein	NA|157aa|up_1|NZ_CP053564.1_6006684_6007155_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|117aa|up_0|NZ_CP053564.1_6007354_6007705_-	NA	NA|181aa|down_0|NZ_CP053564.1_6009226_6009769_-	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase	NA|172aa|down_1|NZ_CP053564.1_6009773_6010289_-	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|505aa|down_2|NZ_CP053564.1_6010317_6011832_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|202aa|down_3|NZ_CP053564.1_6011932_6012538_+	NA	NA|151aa|down_4|NZ_CP053564.1_6012534_6012987_+	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|790aa|down_5|NZ_CP053564.1_6012997_6015367_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|280aa|down_6|NZ_CP053564.1_6015384_6016224_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|265aa|down_7|NZ_CP053564.1_6016248_6017043_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|396aa|down_8|NZ_CP053564.1_6017184_6018372_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	DEDDh|591aa|down_9|NZ_CP053564.1_6019371_6021144_+	PRK06063, PRK06063, DEDDh family exonuclease
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	11	6018967-6019072	8	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Unclear	GTCGTCAGCAGGGCGCTCACGTCACA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA|117aa|up_9|NZ_CP053564.1_6007354_6007705_-,NA|202aa|up_5|NZ_CP053564.1_6011932_6012538_+,NA|415aa|down_2|NZ_CP053564.1_6022070_6023315_-,NA|83aa|down_3|NZ_CP053564.1_6023311_6023560_-	NA|117aa|up_9|NZ_CP053564.1_6007354_6007705_-	NA	NA|181aa|up_8|NZ_CP053564.1_6009226_6009769_-	PRK03759, PRK03759, isopentenyl-diphosphate Delta-isomerase	NA|172aa|up_7|NZ_CP053564.1_6009773_6010289_-	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|505aa|up_6|NZ_CP053564.1_6010317_6011832_-	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon	NA|202aa|up_5|NZ_CP053564.1_6011932_6012538_+	NA	NA|151aa|up_4|NZ_CP053564.1_6012534_6012987_+	cd08352, VOC_Bs_YwkD_like, vicinal oxygen chelate (VOC) family protein  Bacillus subtilis YwkD and similar proteins	NA|790aa|up_3|NZ_CP053564.1_6012997_6015367_-	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c	NA|280aa|up_2|NZ_CP053564.1_6015384_6016224_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|265aa|up_1|NZ_CP053564.1_6016248_6017043_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|396aa|up_0|NZ_CP053564.1_6017184_6018372_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	DEDDh|591aa|down_0|NZ_CP053564.1_6019371_6021144_+	PRK06063, PRK06063, DEDDh family exonuclease	NA|287aa|down_1|NZ_CP053564.1_6021151_6022012_-	cd01146, FhuD, Fe3+-siderophore binding domain FhuD	NA|415aa|down_2|NZ_CP053564.1_6022070_6023315_-	NA	NA|83aa|down_3|NZ_CP053564.1_6023311_6023560_-	NA	NA|210aa|down_4|NZ_CP053564.1_6023556_6024186_-	COG0346, GloA, Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]	NA|235aa|down_5|NZ_CP053564.1_6024244_6024949_-	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain	NA|248aa|down_6|NZ_CP053564.1_6024977_6025721_-	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|531aa|down_7|NZ_CP053564.1_6025717_6027310_-	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|494aa|down_8|NZ_CP053564.1_6027306_6028788_-	PRK08255, PRK08255, bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase	NA|708aa|down_9|NZ_CP053564.1_6028905_6031029_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
GCF_013155125.1_ASM1315512v1	NZ_CP053564	Pseudonocardia sp. Gen01 chromosome, complete genome	12	6164803-6165237	3	CRT	no		DEDDh,csa3,DinG,WYL,cas3,RT,cas4	Orphan	GTGAGCAAGGACTGGAACTGA	21	0	0	NA	NA	NA	7	7	Orphan	DEDDh,csa3,DinG,WYL,cas3,RT,cas4	NA,NA|283aa|down_9|NZ_CP053564.1_6176374_6177223_-	NA|465aa|up_9|NZ_CP053564.1_6152489_6153884_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|362aa|up_8|NZ_CP053564.1_6153880_6154966_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|246aa|up_7|NZ_CP053564.1_6154964_6155702_+	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|218aa|up_6|NZ_CP053564.1_6155997_6156651_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|422aa|up_5|NZ_CP053564.1_6156647_6157913_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|370aa|up_4|NZ_CP053564.1_6157934_6159044_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|222aa|up_3|NZ_CP053564.1_6159043_6159709_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|640aa|up_2|NZ_CP053564.1_6159708_6161628_-	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional	NA|434aa|up_1|NZ_CP053564.1_6161663_6162965_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|453aa|up_0|NZ_CP053564.1_6163046_6164405_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|409aa|down_0|NZ_CP053564.1_6165241_6166468_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|207aa|down_1|NZ_CP053564.1_6166529_6167150_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|147aa|down_2|NZ_CP053564.1_6167152_6167593_-	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]	NA|154aa|down_3|NZ_CP053564.1_6167634_6168096_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|723aa|down_4|NZ_CP053564.1_6168162_6170331_+	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX	NA|535aa|down_5|NZ_CP053564.1_6170344_6171949_-	PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed	NA|412aa|down_6|NZ_CP053564.1_6171945_6173181_-	cd17365, MFS_PcaK_like, 4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily	NA|239aa|down_7|NZ_CP053564.1_6173232_6173949_-	COG1414, IclR, Transcriptional regulator [Transcription]	NA|772aa|down_8|NZ_CP053564.1_6174057_6176373_+	cd11336, AmyAc_MTSase, Alpha amylase catalytic domain found in maltooligosyl trehalose synthase (MTSase)	NA|283aa|down_9|NZ_CP053564.1_6176374_6177223_-	NA
