assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013138145.1_ASM1313814v1	NZ_CP053336	Salmonella bongori serovar 48:z81:- strain 08-0158 chromosome, complete genome	1	1065270-1065522	1	CRISPRCasFinder	no		DEDDh,DinG,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	GCATTAAAATACGCATCAGATAGGTTAA	28	0	0	NA	NA	NA	3	3	Orphan	DEDDh,DinG,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|553aa|up_9|NZ_CP053336.1_1050988_1052647_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|up_8|NZ_CP053336.1_1052847_1053747_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|up_7|NZ_CP053336.1_1053889_1055542_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|up_6|NZ_CP053336.1_1055552_1056521_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional	NA|573aa|up_5|NZ_CP053336.1_1056712_1058431_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|334aa|up_4|NZ_CP053336.1_1058469_1059471_+	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|478aa|up_3|NZ_CP053336.1_1059481_1060915_+	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|338aa|up_2|NZ_CP053336.1_1061010_1062024_+	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]	NA|277aa|up_1|NZ_CP053336.1_1062020_1062851_-	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|108aa|up_0|NZ_CP053336.1_1062847_1063171_-	PRK02877, PRK02877, hypothetical protein; Provisional	NA|172aa|down_0|NZ_CP053336.1_1066305_1066821_+	PRK10533, PRK10533, putative lipoprotein; Provisional	NA|243aa|down_1|NZ_CP053336.1_1067044_1067773_+	PRK11124, artP, arginine transporter ATP-binding subunit; Provisional	NA|244aa|down_2|NZ_CP053336.1_1067790_1068522_+	PRK15007, PRK15007, arginine ABC transporter substrate-binding protein	NA|239aa|down_3|NZ_CP053336.1_1068528_1069245_+	PRK11123, PRK11123, arginine ABC transporter permease ArtQ	NA|223aa|down_4|NZ_CP053336.1_1069244_1069913_+	PRK11122, artM, arginine ABC transporter permease ArtM	NA|244aa|down_5|NZ_CP053336.1_1070147_1070879_+	cd13700, PBP2_Arg_STM4351, Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold	NA|471aa|down_6|NZ_CP053336.1_1071055_1072468_+	pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST)	NA|496aa|down_7|NZ_CP053336.1_1072553_1074041_-	COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion transport and metabolism]	NA|107aa|down_8|NZ_CP053336.1_1074050_1074371_-	COG3414, SgaB, Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]	NA|448aa|down_9|NZ_CP053336.1_1074402_1075746_-	PRK12997, PRK12997, PTS sugar transporter subunit IIC
GCF_013138145.1_ASM1313814v1	NZ_CP053336	Salmonella bongori serovar 48:z81:- strain 08-0158 chromosome, complete genome	2	3611930-3612812	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	2	2	3612019-3612051|3612020-3612051	NZ_CP053336.1_2060754-2060722|NZ_CP053336.1_2060753-2060722	I-E:I-E:I-E	14,14,14	14	TypeI-E	DEDDh,DinG,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|447aa|up_9|NZ_CP053336.1_3595865_3597206_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|447aa|up_8|NZ_CP053336.1_3597226_3598567_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_7|NZ_CP053336.1_3598645_3599788_+	pfam02595, Gly_kinase, Glycerate kinase family	NA|919aa|up_6|NZ_CP053336.1_3599917_3602674_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_5|NZ_CP053336.1_3602731_3604027_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_4|NZ_CP053336.1_3604078_3606313_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_3|NZ_CP053336.1_3606430_3607222_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP053336.1_3607449_3609087_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP053336.1_3609169_3610468_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP053336.1_3610968_3611640_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP053336.1_3612903_3613701_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP053336.1_3613781_3614144_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP053336.1_3614449_3616249_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP053336.1_3616248_3617961_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP053336.1_3618044_3618779_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP053336.1_3618864_3619818_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP053336.1_3620254_3622918_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_7|NZ_CP053336.1_3622929_3624489_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|down_8|NZ_CP053336.1_3624485_3625040_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_9|NZ_CP053336.1_3625053_3626109_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_013138145.1_ASM1313814v1	NZ_CP053336	Salmonella bongori serovar 48:z81:- strain 08-0158 chromosome, complete genome	3	3628805-3629444	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	DEDDh,DinG,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	6	6	3628833-3628865|3628894-3628927|3628956-3628988|3628834-3628865|3628895-3628927|3628957-3628988	NZ_CP053336.1_2121006-2121038|NZ_CP053336.1_2047193-2047226|NZ_CP053336.1_2062339-2062371|NZ_CP053336.1_2121007-2121038|NZ_CP053336.1_2047194-2047226|NZ_CP053336.1_2062340-2062371	I-E:I-E:I-E	9,10,10	10	TypeI-E	DEDDh,DinG,cas3,cas14j,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|245aa|up_9|NZ_CP053336.1_3618044_3618779_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP053336.1_3618864_3619818_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP053336.1_3620254_3622918_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NZ_CP053336.1_3622929_3624489_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|185aa|up_5|NZ_CP053336.1_3624485_3625040_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP053336.1_3625053_3626109_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP053336.1_3626119_3626866_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP053336.1_3626847_3627498_+	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas1|307aa|up_1|NZ_CP053336.1_3627494_3628415_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP053336.1_3628414_3628708_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|351aa|down_0|NZ_CP053336.1_3629585_3630638_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053336.1_3630890_3631799_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP053336.1_3631808_3633248_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053336.1_3633234_3633840_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|104aa|down_4|NZ_CP053336.1_3634403_3634715_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|NZ_CP053336.1_3634733_3635444_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|NZ_CP053336.1_3635443_3635923_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|NZ_CP053336.1_3635919_3636969_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_CP053336.1_3636949_3637711_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_CP053336.1_3637704_3638331_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
