The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053468	Fusobacterium nucleatum strain Fn12230 chromosome, complete genome	2421837	274188	306337	2421837	capsid,integrase,holin,transposase,portal,terminase,plate	Fusobacterium_phage(30.0%)	45	268262:268279	310590:310607
268262:268279	attL	AAAAGAAGAATTAAAAGA	NA	NA	NA	NA
WP_096917706.1|274188_274950_+|integrase	phage integrase N-terminal SAM-like domain-containing protein	integrase	NA	NA	NA	NA
WP_005899911.1|275132_275537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899910.1|275549_277409_+|transposase	Mu transposase C-terminal domain-containing protein	transposase	A0A2H4JGQ6	uncultured_Caudovirales_phage	24.8	7.4e-15
WP_005899909.1|277417_278365_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005899907.1|278378_278615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899906.1|278713_278896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899905.1|278892_279198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_171487406.1|279200_279344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899904.1|279325_280009_+	DUF3164 family protein	NA	NA	NA	NA	NA
WP_005899903.1|279980_280367_+	DUF1018 domain-containing protein	NA	NA	NA	NA	NA
WP_005899902.1|280359_280656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899901.1|280657_280846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899900.1|280845_281430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899899.1|281443_282019_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005899898.1|282554_283325_+	SHOCT domain-containing protein	NA	X5JB37	Clostridium_phage	36.3	1.2e-32
WP_005899896.1|283348_283576_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005899895.1|283984_284212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899894.1|284257_284443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899892.1|284815_285214_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005899891.1|285182_286454_+|terminase	PBSX family phage terminase large subunit	terminase	S5MC58	Brevibacillus_phage	59.9	5.1e-140
WP_005899890.1|286443_287694_+|portal	phage portal protein	portal	A0A0K1LLE7	Bacillus_phage	26.0	2.0e-19
WP_005899889.1|287690_288428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899888.1|288439_290224_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_005899887.1|290269_290773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899886.1|290769_291270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096917707.1|291271_291607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899884.1|291599_292112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899883.1|292111_293149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899882.1|293148_293538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096917711.1|293549_293945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096917708.1|293883_294081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899875.1|296730_297351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899873.1|297368_297692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096917709.1|297691_298648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096917710.1|298592_299177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899865.1|299176_299515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899862.1|299507_300614_+|plate	baseplate J/gp47 family protein	plate	A0A2H4J8D2	uncultured_Caudovirales_phage	25.2	9.5e-18
WP_005899860.1|300613_301240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143403388.1|302371_302683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005899857.1|302734_303709_+|integrase	site-specific integrase	integrase	A0A0E3U2P3	Fusobacterium_phage	68.8	4.4e-128
WP_005899856.1|303727_304516_+	hypothetical protein	NA	A0A0E3U2P7	Fusobacterium_phage	42.4	4.9e-08
WP_005899848.1|304530_305049_+	M15 family metallopeptidase	NA	A0A0E3Y6B0	Fusobacterium_phage	54.6	5.2e-43
WP_005899846.1|305061_305433_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899844.1|305419_305872_+	DUF1353 domain-containing protein	NA	A0A291AXJ8	Shigella_phage	36.9	6.8e-07
WP_005899843.1|305881_306337_+|holin	phage holin family protein	holin	S6AVT9	Thermus_phage	36.8	1.3e-13
310590:310607	attR	AAAAGAAGAATTAAAAGA	NA	NA	NA	NA
>prophage 2
NZ_CP053468	Fusobacterium nucleatum strain Fn12230 chromosome, complete genome	2421837	925906	968586	2421837	capsid,tail,integrase,portal,holin,protease,terminase,plate	Fusobacterium_phage(96.3%)	68	916000:916019	972201:972220
916000:916019	attL	CCTTTTGAAACTATATTTTT	NA	NA	NA	NA
WP_005899138.1|925906_926683_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	2.4e-15
WP_096917651.1|926820_926958_+	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_060798680.1|926954_927677_-	NAD-dependent protein deacylase	NA	S5M4R0	Bacillus_phage	32.6	5.1e-28
WP_005899136.1|927744_929163_-	recombinase family protein	NA	NA	NA	NA	NA
WP_005899132.1|929299_929587_-	hypothetical protein	NA	A0A0E3Y667	Fusobacterium_phage	64.2	1.1e-29
WP_005899130.1|929596_929989_-	hypothetical protein	NA	A0A0E3Y6C4	Fusobacterium_phage	96.9	4.6e-68
WP_096917650.1|929998_930574_-	hypothetical protein	NA	A0A0E3U2M3	Fusobacterium_phage	92.7	2.6e-96
WP_008692946.1|930633_930837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005899123.1|930949_931126_-	hypothetical protein	NA	A0A0E3U2M4	Fusobacterium_phage	100.0	5.0e-22
WP_005899121.1|931122_931749_-	hypothetical protein	NA	A0A0E3U242	Fusobacterium_phage	98.6	2.1e-107
WP_005899119.1|931741_932449_-	ParA family protein	NA	A0A0E3Y677	Fusobacterium_phage	98.7	1.4e-126
WP_005899116.1|932458_932839_-	hypothetical protein	NA	A0A0E3Y6D7	Fusobacterium_phage	96.0	2.8e-62
WP_005899114.1|932850_933060_-	hypothetical protein	NA	A0A0E3Y5C9	Fusobacterium_phage	98.6	5.2e-34
WP_005899112.1|933071_934118_-	phage replisome organizer N-terminal domain-containing protein	NA	A0A0E3U2M6	Fusobacterium_phage	92.2	3.2e-148
WP_005899110.1|934128_934392_-	hypothetical protein	NA	A0A0E3U243	Fusobacterium_phage	98.9	5.5e-41
WP_005899108.1|934404_934581_-	hypothetical protein	NA	A0A0E3Y606	Fusobacterium_phage	96.6	6.9e-24
WP_005899105.1|934590_934827_-	hypothetical protein	NA	A0A0E3Y4U1	Fusobacterium_phage	80.8	1.9e-29
WP_096917649.1|934836_935019_-	hypothetical protein	NA	A0A0E3Y682	Fusobacterium_phage	91.7	2.5e-24
WP_005899099.1|935293_935569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005899097.1|935743_935959_+	helix-turn-helix transcriptional regulator	NA	A0A0E3U244	Fusobacterium_phage	51.4	8.8e-13
WP_005899096.1|936067_936802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899095.1|936822_937266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899094.1|937266_937548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005899092.1|937673_938048_+	hypothetical protein	NA	A0A0E3Y6E2	Fusobacterium_phage	53.1	1.3e-19
WP_005899091.1|938047_938539_+	hypothetical protein	NA	A0A0E3Y5D4	Fusobacterium_phage	82.4	3.2e-66
WP_005899090.1|938604_939015_+	DUF2513 domain-containing protein	NA	A0A0E3Y611	Fusobacterium_phage	100.0	3.2e-72
WP_005899089.1|938985_939225_-	hypothetical protein	NA	A0A0E3U2N0	Fusobacterium_phage	97.5	1.2e-34
WP_005899088.1|939369_939591_-	hypothetical protein	NA	A0A0E3U245	Fusobacterium_phage	98.6	3.0e-32
WP_005899087.1|939814_940279_+	hypothetical protein	NA	A0A0E3Y4U2	Fusobacterium_phage	97.5	4.8e-56
WP_005899086.1|940401_940704_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_005899085.1|940696_940957_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_005899084.1|941117_941342_+	hypothetical protein	NA	A0A0E3Y6E5	Fusobacterium_phage	82.4	4.7e-33
WP_005899081.1|941513_942602_+	hypothetical protein	NA	A0A0E3U246	Fusobacterium_phage	63.3	3.4e-129
WP_005899079.1|942779_944096_+	DNA modification methylase	NA	A0A0E3Y5D8	Fusobacterium_phage	95.9	9.3e-246
WP_005899078.1|944092_944764_+	hypothetical protein	NA	A0A0E3Y615	Fusobacterium_phage	70.9	1.5e-82
WP_005899077.1|944875_945349_+	hypothetical protein	NA	A0A0E3Y4U4	Fusobacterium_phage	95.5	2.5e-76
WP_101462519.1|945287_947084_+|terminase	phage terminase large subunit family protein	terminase	A0A0E3U2N4	Fusobacterium_phage	99.3	0.0e+00
WP_005899075.1|947083_947302_+	hypothetical protein	NA	A0A0E3U247	Fusobacterium_phage	100.0	7.0e-34
WP_005899074.1|947311_948847_+|portal	phage portal protein	portal	A0A0E3Y693	Fusobacterium_phage	99.6	9.0e-293
WP_005899073.1|948846_949950_+|protease	Clp protease ClpP	protease	A0A0E3Y6E9	Fusobacterium_phage	98.6	1.1e-186
WP_005899072.1|949961_950279_+	hypothetical protein	NA	A0A0E3Y5E3	Fusobacterium_phage	99.0	1.1e-51
WP_005899070.1|950291_951299_+|capsid	major capsid protein	capsid	A0A0E3U2N5	Fusobacterium_phage	99.4	2.1e-189
WP_005899069.1|951350_951578_+	hypothetical protein	NA	A0A0E3U249	Fusobacterium_phage	80.0	1.3e-14
WP_005899068.1|951577_951892_+	hypothetical protein	NA	A0A0E3Y618	Fusobacterium_phage	99.0	7.5e-53
WP_005899067.1|951891_952500_+|tail	phage tail protein	tail	A0A0E3Y4U7	Fusobacterium_phage	97.5	7.6e-86
WP_005899066.1|952496_952973_+	hypothetical protein	NA	A0A0E3Y698	Fusobacterium_phage	100.0	1.0e-85
WP_005899065.1|952974_953328_+	hypothetical protein	NA	A0A0E3U2N7	Fusobacterium_phage	94.9	3.4e-30
WP_005899064.1|953328_954729_+|tail	phage tail protein	tail	A0A0E3U251	Fusobacterium_phage	97.2	2.0e-267
WP_005899063.1|954740_955274_+|tail	phage major tail tube protein	tail	A0A0E3Y6F4	Fusobacterium_phage	98.3	1.0e-94
WP_005899062.1|955284_955620_+	hypothetical protein	NA	A0A0E3Y5E7	Fusobacterium_phage	91.0	8.0e-53
WP_032840093.1|955793_956024_+	hypothetical protein	NA	A0A0E3Y621	Fusobacterium_phage	80.3	1.3e-25
WP_005899059.1|956096_958844_+|tail	phage tail tape measure protein	tail	A0A0E3U2N9	Fusobacterium_phage	95.4	0.0e+00
WP_008700839.1|958806_959043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899057.1|959042_960128_+	hypothetical protein	NA	A0A0E3U253	Fusobacterium_phage	100.0	2.6e-201
WP_005899056.1|960124_960658_+|plate	phage baseplate assembly protein V	plate	A0A0E3Y4V1	Fusobacterium_phage	98.3	1.1e-85
WP_005899055.1|960657_961044_+|tail	phage tail protein	tail	A0A0E3Y6A2	Fusobacterium_phage	100.0	1.2e-65
WP_005899054.1|961043_961358_+	hypothetical protein	NA	A0A0E3Y6F8	Fusobacterium_phage	100.0	6.5e-49
WP_005899052.1|961350_962451_+|plate	baseplate J/gp47 family protein	plate	A0A0E3U2P1	Fusobacterium_phage	97.8	6.2e-203
WP_005899051.1|962443_963079_+|tail	phage tail protein I	tail	A0A0E3U255	Fusobacterium_phage	85.8	6.3e-99
WP_096917941.1|964091_964349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_059222758.1|964350_964665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_143403403.1|964668_964983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005899046.1|965031_966006_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0E3U2P3	Fusobacterium_phage	90.7	6.2e-154
WP_005899044.1|966196_966946_+	hypothetical protein	NA	A0A0E3U2P7	Fusobacterium_phage	47.0	9.2e-57
WP_005899043.1|966942_967554_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A0E3Y6A6	Fusobacterium_phage	40.4	7.3e-36
WP_005899042.1|967564_967930_+	hypothetical protein	NA	A0A0E3Y6G3	Fusobacterium_phage	83.5	2.9e-56
WP_005899039.1|967926_968169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005899036.1|968181_968586_+|holin	phage holin family protein	holin	A0A0E3Y658	Fusobacterium_phage	95.0	6.4e-57
972201:972220	attR	CCTTTTGAAACTATATTTTT	NA	NA	NA	NA
>prophage 3
NZ_CP053468	Fusobacterium nucleatum strain Fn12230 chromosome, complete genome	2421837	1215255	1221670	2421837		Synechococcus_phage(33.33%)	7	NA	NA
WP_005896886.1|1215255_1215729_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	46.9	3.8e-24
WP_005896888.1|1215957_1216671_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	G8EYA2	Synechococcus_phage	43.2	1.9e-43
WP_005900177.1|1216717_1218064_+	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	32.0	2.5e-52
WP_005900179.1|1218075_1219095_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SQF5	Cyanophage	43.8	6.6e-66
WP_005900180.1|1219082_1219667_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.2	9.4e-25
WP_032835437.1|1219833_1220130_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096917737.1|1220155_1221670_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	43.0	3.4e-58
>prophage 1
NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	46251	0	22545	46251	integrase	Fusobacterium_phage(50.0%)	27	2963:2979	21305:21321
WP_005901511.1|1085_1301_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005901512.1|1332_1932_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_171487427.1|1953_2097_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005901513.1|2204_2441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005901514.1|2451_3423_-	hypothetical protein	NA	NA	NA	NA	NA
2963:2979	attL	AAATTATATTTTTCTTT	NA	NA	NA	NA
WP_032834775.1|3431_4055_-	S26 family signal peptidase	NA	NA	NA	NA	NA
WP_005901516.1|4018_6490_-	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_005901517.1|6501_6789_-	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_005901518.1|6781_7768_-	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA	NA
WP_096917859.1|7760_8192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005901520.1|8200_10462_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_005901521.1|10464_11790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005901522.1|11798_11975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005901523.1|11983_12757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005901524.1|12803_14045_-	conjugal transfer protein TrbI	NA	NA	NA	NA	NA
WP_005901525.1|14054_14777_-	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA	NA
WP_005901526.1|14843_15515_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_005901527.1|15514_15847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032834772.1|15980_16598_-|integrase	tyrosine-type recombinase/integrase	integrase	A3F636	Streptococcus_phage	30.2	1.8e-13
WP_005901531.1|17289_17589_+	hypothetical protein	NA	A0A0E3Y5I4	Fusobacterium_phage	48.1	1.0e-11
WP_005901532.1|17851_18964_+	ParA family protein	NA	A0A0E3Y677	Fusobacterium_phage	38.3	8.9e-32
WP_032834805.1|18965_19658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005901534.1|19670_19934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005901535.1|20144_20732_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_005901536.1|20736_21627_-	zeta toxin family protein	NA	NA	NA	NA	NA
21305:21321	attR	AAATTATATTTTTCTTT	NA	NA	NA	NA
WP_005901537.1|21626_21872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005901538.1|21915_22545_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	29.0	8.3e-11
>prophage 2
NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	46251	28896	29973	46251		Listeria_phage(100.0%)	1	NA	NA
WP_005901477.1|28896_29973_-	toprim domain-containing protein	NA	S4U728	Listeria_phage	26.8	2.4e-05
>prophage 3
NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	46251	43461	44820	46251		Fusobacterium_phage(100.0%)	1	NA	NA
WP_005901508.1|43461_44820_-	phage replisome organizer N-terminal domain-containing protein	NA	A0A0E3U2M6	Fusobacterium_phage	46.4	1.1e-23
