assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013122565.1_ASM1312256v1	NZ_CP053258	Escherichia coli strain GF4-3 chromosome, complete genome	1	450384-450507	1	CRISPRCasFinder	no	DEDDh	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	NA,NA|30aa|down_7|NZ_CP053258.1_459403_459493_+	NA|471aa|up_9|NZ_CP053258.1_439838_441251_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP053258.1_441807_442017_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP053258.1_442471_443098_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP053258.1_443118_445221_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053258.1_445233_445872_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053258.1_445935_446604_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053258.1_446600_447386_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053258.1_447389_448202_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053258.1_448213_449818_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053258.1_449943_450249_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053258.1_450821_452078_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053258.1_452118_453492_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053258.1_453706_454348_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053258.1_454387_455536_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053258.1_455826_457038_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053258.1_457150_458083_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053258.1_458079_459105_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053258.1_459403_459493_+	NA	NA|390aa|down_8|NZ_CP053258.1_459658_460828_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053258.1_460973_461555_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013122565.1_ASM1312256v1	NZ_CP053258	Escherichia coli strain GF4-3 chromosome, complete genome	2	1126247-1126338	2	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	NA,NA	NA|503aa|up_9|NZ_CP053258.1_1113831_1115340_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP053258.1_1115762_1119725_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053258.1_1119764_1120403_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053258.1_1120690_1121782_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053258.1_1121781_1122474_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053258.1_1122485_1122872_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053258.1_1122879_1123680_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053258.1_1123689_1124280_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053258.1_1124290_1124785_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053258.1_1124805_1126134_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053258.1_1126761_1127358_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053258.1_1127378_1127606_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053258.1_1127643_1128885_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP053258.1_1129175_1130435_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP053258.1_1130694_1131615_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP053258.1_1131614_1131920_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP053258.1_1132012_1132612_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP053258.1_1132608_1135155_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP053258.1_1135154_1136327_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP053258.1_1136456_1137149_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_013122565.1_ASM1312256v1	NZ_CP053258	Escherichia coli strain GF4-3 chromosome, complete genome	3	1259693-1259841	3,1	CRISPRCasFinder,PILER-CR	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	Orphan	TTTCTAAGCTGCCAGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28	0	0	NA	NA	I-F:I-F	2,2	2	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	NA,NA	NA|431aa|up_9|NZ_CP053258.1_1244483_1245776_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP053258.1_1245866_1247210_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP053258.1_1247220_1247832_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1382aa|up_6|NZ_CP053258.1_1247986_1252132_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP053258.1_1252266_1252761_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP053258.1_1253305_1254271_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP053258.1_1254393_1256160_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP053258.1_1256160_1257882_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP053258.1_1257923_1258628_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP053258.1_1258912_1259131_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP053258.1_1260054_1262331_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP053258.1_1262361_1262682_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP053258.1_1263004_1263229_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP053258.1_1263301_1265248_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP053258.1_1265244_1266360_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|319aa|down_5|NZ_CP053258.1_1266510_1267467_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP053258.1_1267463_1269122_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP053258.1_1269547_1270243_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP053258.1_1270701_1271601_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP053258.1_1271744_1273397_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_013122565.1_ASM1312256v1	NZ_CP053258	Escherichia coli strain GF4-3 chromosome, complete genome	4	2390699-2390845	4	CRISPRCasFinder	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	Orphan	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGAC	51	0	0	NA	NA	NA	1	1	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	NA|309aa|up_6|NZ_CP053258.1_2379667_2380594_+,NA|591aa|down_6|NZ_CP053258.1_2397838_2399611_-	NA|545aa|up_9|NZ_CP053258.1_2375183_2376818_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|392aa|up_8|NZ_CP053258.1_2376814_2377990_+	cd17263, RMtype1_S_AbaB8300I-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Acinetobacter baumannii B8300 S subunit (S	NA|564aa|up_7|NZ_CP053258.1_2377986_2379678_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|309aa|up_6|NZ_CP053258.1_2379667_2380594_+	NA	NA|423aa|up_5|NZ_CP053258.1_2382150_2383419_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP053258.1_2383898_2384918_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP053258.1_2385047_2386550_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP053258.1_2386701_2387784_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP053258.1_2387783_2388884_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP053258.1_2389150_2390662_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP053258.1_2390917_2391361_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP053258.1_2391360_2394216_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP053258.1_2394265_2395453_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP053258.1_2395644_2396148_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP053258.1_2396199_2396616_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP053258.1_2396777_2397782_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|591aa|down_6|NZ_CP053258.1_2397838_2399611_-	NA	NA|151aa|down_7|NZ_CP053258.1_2399733_2400186_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_8|NZ_CP053258.1_2400330_2400924_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_9|NZ_CP053258.1_2400994_2401708_+	PRK12742, PRK12742, SDR family oxidoreductase
GCF_013122565.1_ASM1312256v1	NZ_CP053258	Escherichia coli strain GF4-3 chromosome, complete genome	5	4110491-4110702	2,5,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCGT,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCG	30,29,18	0	0	NA	NA	I-E:I-E:NA	2,3,3	3	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	NA|47aa|up_1|NZ_CP053258.1_4109202_4109343_-,NA|88aa|down_0|NZ_CP053258.1_4110767_4111031_+	NA|447aa|up_9|NZ_CP053258.1_4096150_4097491_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|919aa|up_8|NZ_CP053258.1_4097722_4100479_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_7|NZ_CP053258.1_4100535_4101837_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP053258.1_4101884_4104119_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_5|NZ_CP053258.1_4104214_4105006_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP053258.1_4105233_4106871_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP053258.1_4106958_4108257_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP053258.1_4108316_4109189_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP053258.1_4109202_4109343_-	NA	NA|224aa|up_0|NZ_CP053258.1_4109481_4110153_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|88aa|down_0|NZ_CP053258.1_4110767_4111031_+	NA	NA|121aa|down_1|NZ_CP053258.1_4111393_4111756_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP053258.1_4112074_4113874_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP053258.1_4113873_4115586_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP053258.1_4115659_4116394_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_5|NZ_CP053258.1_4116658_4116811_+	pfam01848, HOK_GEF, Hok/gef family	NA|346aa|down_6|NZ_CP053258.1_4120668_4121706_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_7|NZ_CP053258.1_4121957_4122866_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_8|NZ_CP053258.1_4122867_4124295_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_9|NZ_CP053258.1_4124294_4124900_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional
GCF_013122565.1_ASM1312256v1	NZ_CP053258	Escherichia coli strain GF4-3 chromosome, complete genome	6	4118360-4120586	3,6,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	35,36,36	36	Orphan	DEDDh,DinG,c2c9_V-U4,cas3,WYL,csa3,PD-DExK	NA|47aa|up_7|NZ_CP053258.1_4109202_4109343_-,NA|88aa|up_5|NZ_CP053258.1_4110767_4111031_+,NA	NA|433aa|up_9|NZ_CP053258.1_4106958_4108257_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_8|NZ_CP053258.1_4108316_4109189_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_7|NZ_CP053258.1_4109202_4109343_-	NA	NA|224aa|up_6|NZ_CP053258.1_4109481_4110153_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|88aa|up_5|NZ_CP053258.1_4110767_4111031_+	NA	NA|121aa|up_4|NZ_CP053258.1_4111393_4111756_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_3|NZ_CP053258.1_4112074_4113874_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_2|NZ_CP053258.1_4113873_4115586_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_1|NZ_CP053258.1_4115659_4116394_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_0|NZ_CP053258.1_4116658_4116811_+	pfam01848, HOK_GEF, Hok/gef family	NA|346aa|down_0|NZ_CP053258.1_4120668_4121706_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053258.1_4121957_4122866_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053258.1_4122867_4124295_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053258.1_4124294_4124900_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053258.1_4124949_4125273_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053258.1_4125466_4125778_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053258.1_4125796_4126507_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053258.1_4126506_4126986_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053258.1_4126982_4128032_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053258.1_4128012_4128774_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
