assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013122035.1_ASM1312203v1	NZ_CP053392	Helicobacter pylori strain HP9192 chromosome, complete genome	1	236108-236255	1	CRISPRCasFinder	no	c2c9_V-U4	DEDDh,c2c9_V-U4,cas3,cas14j	Type V-U4	TTTTAACTTTGATTGTTTGGTTTGGTTGTTTGAGATTTGTTGTAA	45	0	0	NA	NA	NA	1	1	TypeV-U4	DEDDh,c2c9_V-U4,cas3,cas14j	NA|276aa|up_8|NZ_CP053392.1_223221_224049_+,NA|88aa|up_6|NZ_CP053392.1_224474_224738_+,NA|577aa|down_6|NZ_CP053392.1_242584_244315_-	NA|351aa|up_9|NZ_CP053392.1_222078_223131_+	COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	NA|276aa|up_8|NZ_CP053392.1_223221_224049_+	NA	NA|94aa|up_7|NZ_CP053392.1_224193_224475_+	pfam04956, TrbC, TrbC/VIRB2 family	NA|88aa|up_6|NZ_CP053392.1_224474_224738_+	NA	NA|447aa|up_5|NZ_CP053392.1_227408_228749_+	COG3014, COG3014, Uncharacterized protein conserved in bacteria [Function unknown]	NA|322aa|up_4|NZ_CP053392.1_228844_229810_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|406aa|up_3|NZ_CP053392.1_229806_231024_+	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase	NA|191aa|up_2|NZ_CP053392.1_231032_231605_-	PRK09597, PRK09597, lipid A 1-phosphatase LpxE	NA|522aa|up_1|NZ_CP053392.1_231615_233181_-	PRK09598, PRK09598, phosphoethanolamine--lipid A transferase EptA	NA|689aa|up_0|NZ_CP053392.1_233779_235846_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|218aa|down_0|NZ_CP053392.1_236417_237071_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	c2c9_V-U4|420aa|down_1|NZ_CP053392.1_237045_238305_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|427aa|down_2|NZ_CP053392.1_238595_239876_-	PRK05614, gltA, citrate synthase	NA|426aa|down_3|NZ_CP053392.1_240075_241353_+	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|176aa|down_4|NZ_CP053392.1_241420_241948_+	pfam07509, DUF1523, Protein of unknown function (DUF1523)	NA|219aa|down_5|NZ_CP053392.1_241924_242581_-	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|577aa|down_6|NZ_CP053392.1_242584_244315_-	NA	NA|138aa|down_7|NZ_CP053392.1_244423_244837_+	pfam00582, Usp, Universal stress protein family	NA|92aa|down_8|NZ_CP053392.1_244858_245134_+	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|740aa|down_9|NZ_CP053392.1_245133_247353_+	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
GCF_013122035.1_ASM1312203v1	NZ_CP053392	Helicobacter pylori strain HP9192 chromosome, complete genome	2	334976-335062	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,cas14j	Orphan	TTGTTTTTCTTGTTCTAGTTCTAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,cas14j	NA|198aa|up_9|NZ_CP053392.1_322233_322827_+,NA|99aa|up_4|NZ_CP053392.1_327153_327450_+,NA|287aa|down_7|NZ_CP053392.1_343673_344534_+	NA|198aa|up_9|NZ_CP053392.1_322233_322827_+	NA	NA|621aa|up_8|NZ_CP053392.1_322985_324848_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|192aa|up_7|NZ_CP053392.1_324878_325454_-	PRK14149, PRK14149, heat shock protein GrpE; Provisional	NA|277aa|up_6|NZ_CP053392.1_325453_326284_-	PRK03911, PRK03911, HrcA family transcriptional regulator	NA|213aa|up_5|NZ_CP053392.1_326494_327133_+	PRK05834, PRK05834, hypothetical protein; Provisional	NA|99aa|up_4|NZ_CP053392.1_327153_327450_+	NA	NA|628aa|up_3|NZ_CP053392.1_327475_329359_-	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown]	NA|515aa|up_2|NZ_CP053392.1_329421_330966_-	PRK13588, PRK13588, flagellin B; Provisional	NA|737aa|up_1|NZ_CP053392.1_331131_333342_+	PRK05582, PRK05582, type I DNA topoisomerase	NA|309aa|up_0|NZ_CP053392.1_333334_334261_+	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion]	NA|813aa|down_0|NZ_CP053392.1_335546_337985_-	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	NA|613aa|down_1|NZ_CP053392.1_338345_340184_+	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed	NA|204aa|down_2|NZ_CP053392.1_340180_340792_+	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3	NA|65aa|down_3|NZ_CP053392.1_340772_340967_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|117aa|down_4|NZ_CP053392.1_341061_341412_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|287aa|down_5|NZ_CP053392.1_341611_342472_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|144aa|down_6|NZ_CP053392.1_342827_343259_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|287aa|down_7|NZ_CP053392.1_343673_344534_+	NA	NA|456aa|down_8|NZ_CP053392.1_345445_346813_-	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|414aa|down_9|NZ_CP053392.1_346812_348054_-	TIGR00814, membrane_transport_protein_YhjV, serine transporter
GCF_013122035.1_ASM1312203v1	NZ_CP053392	Helicobacter pylori strain HP9192 chromosome, complete genome	3	1118095-1118246	1	PILER-CR	no		DEDDh,c2c9_V-U4,cas3,cas14j	Orphan	TTTGAAAACAGCAGTTTCAATCAAGGCACTTATAATTTTAATAACA	46	0	0	NA	NA	I-B	2	2	Orphan	DEDDh,c2c9_V-U4,cas3,cas14j	NA|49aa|up_4|NZ_CP053392.1_1111290_1111437_-,NA|220aa|down_8|NZ_CP053392.1_1132155_1132815_+	NA|380aa|up_9|NZ_CP053392.1_1099481_1100621_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NZ_CP053392.1_1100624_1102652_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|513aa|up_7|NZ_CP053392.1_1103193_1104732_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|540aa|up_6|NZ_CP053392.1_1104753_1106373_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NZ_CP053392.1_1107217_1108762_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|49aa|up_4|NZ_CP053392.1_1111290_1111437_-	NA	NA|144aa|up_3|NZ_CP053392.1_1111613_1112045_-	pfam01300, Sua5_yciO_yrdC, Telomere recombination	NA|1086aa|up_2|NZ_CP053392.1_1112049_1115307_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP053392.1_1115405_1116098_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|333aa|up_0|NZ_CP053392.1_1116241_1117240_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|367aa|down_0|NZ_CP053392.1_1125712_1126813_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP053392.1_1126878_1127085_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP053392.1_1127246_1127828_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP053392.1_1127824_1128970_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|317aa|down_4|NZ_CP053392.1_1128938_1129889_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP053392.1_1129889_1130432_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP053392.1_1130447_1131359_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP053392.1_1131355_1132159_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|220aa|down_8|NZ_CP053392.1_1132155_1132815_+	NA	NA|201aa|down_9|NZ_CP053392.1_1132816_1133419_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_013122035.1_ASM1312203v1	NZ_CP053392	Helicobacter pylori strain HP9192 chromosome, complete genome	4	1475586-1475858	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,cas14j	Orphan	AAAAAGAAAGTTTAAAAAAAAGA	23	0	0	NA	NA	NA	5	5	Orphan	DEDDh,c2c9_V-U4,cas3,cas14j	NA|154aa|up_8|NZ_CP053392.1_1465244_1465706_-,NA	NA|381aa|up_9|NZ_CP053392.1_1464076_1465219_+	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase	NA|154aa|up_8|NZ_CP053392.1_1465244_1465706_-	NA	NA|299aa|up_7|NZ_CP053392.1_1466100_1466997_+	pfam00892, EamA, EamA-like transporter family	NA|416aa|up_6|NZ_CP053392.1_1467000_1468248_+	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase	NA|184aa|up_5|NZ_CP053392.1_1468326_1468878_+	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown]	NA|376aa|up_4|NZ_CP053392.1_1468877_1470005_+	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]	NA|335aa|up_3|NZ_CP053392.1_1470170_1471175_+	PRK13287, amiF, formamidase; Provisional	NA|191aa|up_2|NZ_CP053392.1_1471626_1472199_-	PRK04056, PRK04056, septum formation inhibitor Maf	NA|848aa|up_1|NZ_CP053392.1_1472200_1474744_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|77aa|up_0|NZ_CP053392.1_1474862_1475093_+	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown]	NA|709aa|down_0|NZ_CP053392.1_1475896_1478023_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|86aa|down_1|NZ_CP053392.1_1478571_1478829_-	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|182aa|down_2|NZ_CP053392.1_1478851_1479397_-	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional	NA|143aa|down_3|NZ_CP053392.1_1479406_1479835_-	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed	NA|341aa|down_4|NZ_CP053392.1_1479987_1481010_-	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated	NA|645aa|down_5|NZ_CP053392.1_1480999_1482934_-	COG0557, VacB, Exoribonuclease R [Transcription]	NA|264aa|down_6|NZ_CP053392.1_1482933_1483725_-	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase	NA|197aa|down_7|NZ_CP053392.1_1483732_1484323_-	smart00287, SH3b, Bacterial SH3 domain homologues	NA|349aa|down_8|NZ_CP053392.1_1484331_1485378_-	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|596aa|down_9|NZ_CP053392.1_1485374_1487162_-	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold
