assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013114975.1_ASM1311497v1	NZ_CP051218	Salmonella sp. SCFS4 chromosome, complete genome	1	621804-621904	1	CRISPRCasFinder	no		cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	Orphan	GCTTCAGTGGCGAGCGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	NA,NA|177aa|down_1|NZ_CP051218.1_623422_623953_-	NA|448aa|up_9|NZ_CP051218.1_607881_609225_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP051218.1_609852_610305_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP051218.1_610332_611835_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP051218.1_611859_614538_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP051218.1_614759_615161_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP051218.1_615160_616105_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP051218.1_616255_616525_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP051218.1_616766_618902_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP051218.1_619011_619896_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP051218.1_620001_620082_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP051218.1_622117_623362_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP051218.1_623422_623953_-	NA	NA|240aa|down_2|NZ_CP051218.1_624111_624831_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP051218.1_624808_625816_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP051218.1_625993_626890_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP051218.1_626880_627876_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP051218.1_628092_628617_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP051218.1_628610_629114_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP051218.1_629100_629418_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP051218.1_629455_629899_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_013114975.1_ASM1311497v1	NZ_CP051218	Salmonella sp. SCFS4 chromosome, complete genome	2	1142350-1143232	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	13,14,14	14	TypeI-E	cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	NA,NA	NA|179aa|up_9|NZ_CP051218.1_1130894_1131431_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP051218.1_1131427_1131898_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP051218.1_1131912_1132419_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP051218.1_1132438_1133212_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP051218.1_1133224_1135924_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP051218.1_1136003_1136591_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP051218.1_1137199_1138000_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP051218.1_1138227_1139865_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP051218.1_1139947_1141246_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP051218.1_1141381_1142053_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP051218.1_1143329_1144127_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP051218.1_1144214_1144577_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP051218.1_1145000_1146800_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP051218.1_1146799_1148512_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP051218.1_1148587_1149322_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP051218.1_1149409_1150363_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP051218.1_1150743_1153443_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP051218.1_1153800_1155336_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP051218.1_1155352_1155955_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|down_9|NZ_CP051218.1_1155977_1157036_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_013114975.1_ASM1311497v1	NZ_CP051218	Salmonella sp. SCFS4 chromosome, complete genome	3	1159773-1160594	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,13,13	13	TypeI-E	cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	NA,NA	NA|245aa|up_9|NZ_CP051218.1_1148587_1149322_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP051218.1_1149409_1150363_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP051218.1_1150743_1153443_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP051218.1_1153800_1155336_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP051218.1_1155352_1155955_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP051218.1_1155977_1157036_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP051218.1_1157045_1157771_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP051218.1_1157770_1158475_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP051218.1_1158474_1159392_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP051218.1_1159394_1159688_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP051218.1_1160608_1161655_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP051218.1_1161905_1162814_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP051218.1_1162823_1164263_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP051218.1_1164249_1164855_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP051218.1_1164905_1165229_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP051218.1_1165419_1165731_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP051218.1_1165749_1166460_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP051218.1_1166459_1166939_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP051218.1_1166935_1167985_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP051218.1_1167965_1168727_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013114975.1_ASM1311497v1	NZ_CP051218	Salmonella sp. SCFS4 chromosome, complete genome	4	4969152-4969291	3	PILER-CR	no	TnsE_C	cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,PD-DExK,DEDDh,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DinG,TnsE_C	NA|126aa|up_8|NZ_CP051218.1_4963322_4963700_-,NA|124aa|up_7|NZ_CP051218.1_4964109_4964481_-,NA|166aa|up_6|NZ_CP051218.1_4964541_4965039_-,NA	TnsE_C|539aa|up_9|NZ_CP051218.1_4961475_4963092_+	pfam18623, TnsE_C, TnsE C-terminal domain	NA|126aa|up_8|NZ_CP051218.1_4963322_4963700_-	NA	NA|124aa|up_7|NZ_CP051218.1_4964109_4964481_-	NA	NA|166aa|up_6|NZ_CP051218.1_4964541_4965039_-	NA	NA|263aa|up_5|NZ_CP051218.1_4965114_4965903_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|NZ_CP051218.1_4965960_4966485_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|NZ_CP051218.1_4966579_4967053_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|NZ_CP051218.1_4967384_4967921_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP051218.1_4968035_4968362_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP051218.1_4968549_4968789_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|586aa|down_0|NZ_CP051218.1_4969428_4971186_-	COG4533, COG4533, ABC-type uncharacterized transport system, periplasmic component [General function prediction only]	NA|273aa|down_1|NZ_CP051218.1_4971280_4972099_+	PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed	NA|458aa|down_2|NZ_CP051218.1_4972147_4973521_+	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|347aa|down_3|NZ_CP051218.1_4973686_4974727_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|320aa|down_4|NZ_CP051218.1_4974862_4975822_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|297aa|down_5|NZ_CP051218.1_4975821_4976712_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|258aa|down_6|NZ_CP051218.1_4976798_4977572_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|242aa|down_7|NZ_CP051218.1_4977586_4978312_+	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|222aa|down_8|NZ_CP051218.1_4978406_4979072_-	PRK10563, PRK10563, 6-phosphogluconate phosphatase; Provisional	NA|446aa|down_9|NZ_CP051218.1_4979240_4980578_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]
