assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013085905.1_ASM1308590v1	NZ_CP053251	Escherichia coli strain SCU-204 chromosome, complete genome	1	639034-639166	1	CRISPRCasFinder	no		cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	Orphan	ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT	42	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	NA,NA	NA|252aa|up_9|NZ_CP053251.1_630559_631315_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP053251.1_631328_631934_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP053251.1_631930_633571_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP053251.1_633649_633919_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP053251.1_633922_634438_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP053251.1_634440_635217_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP053251.1_635258_636041_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP053251.1_636037_636526_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP053251.1_636692_638186_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP053251.1_638231_638933_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP053251.1_639204_640368_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP053251.1_640377_642567_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP053251.1_642756_644088_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|484aa|down_3|NZ_CP053251.1_644741_646193_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_4|NZ_CP053251.1_646204_646750_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_5|NZ_CP053251.1_652333_652861_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_6|NZ_CP053251.1_652842_653427_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_7|NZ_CP053251.1_653496_653766_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_8|NZ_CP053251.1_653842_654829_+	PRK11768, PRK11768, serine/threonine protein kinase	NA|209aa|down_9|NZ_CP053251.1_654845_655472_+	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA
GCF_013085905.1_ASM1308590v1	NZ_CP053251	Escherichia coli strain SCU-204 chromosome, complete genome	2	1223556-1223705	2	CRISPRCasFinder	no		cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	NA|597aa|up_6|NZ_CP053251.1_1214664_1216455_+,NA	NA|238aa|up_9|NZ_CP053251.1_1212567_1213281_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP053251.1_1213351_1213945_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP053251.1_1214089_1214542_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|597aa|up_6|NZ_CP053251.1_1214664_1216455_+	NA	NA|335aa|up_5|NZ_CP053251.1_1216510_1217515_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP053251.1_1217676_1218093_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP053251.1_1218138_1218642_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP053251.1_1218835_1220032_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP053251.1_1220087_1222943_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|154aa|up_0|NZ_CP053251.1_1222926_1223388_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP053251.1_1223741_1225253_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP053251.1_1225519_1226620_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP053251.1_1226619_1227702_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP053251.1_1227862_1229365_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP053251.1_1229442_1230441_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP053251.1_1230507_1231827_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP053251.1_1231891_1232656_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP053251.1_1232679_1233711_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP053251.1_1233927_1234491_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP053251.1_1234494_1235514_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_013085905.1_ASM1308590v1	NZ_CP053251	Escherichia coli strain SCU-204 chromosome, complete genome	3	2363962-2364109	3	CRISPRCasFinder	no		cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA	28	0	0	NA	NA	I-F	2	2	Orphan	cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	NA,NA	NA|551aa|up_9|NZ_CP053251.1_2350544_2352197_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP053251.1_2352340_2353240_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP053251.1_2353560_2354256_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP053251.1_2354681_2356340_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP053251.1_2356336_2357293_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP053251.1_2357443_2358559_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP053251.1_2358555_2360502_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP053251.1_2360574_2360799_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP053251.1_2361121_2361442_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP053251.1_2361472_2363749_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP053251.1_2364490_2364709_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP053251.1_2364993_2365698_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP053251.1_2365739_2367461_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP053251.1_2367461_2369228_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP053251.1_2369350_2370316_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP053251.1_2370859_2371354_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_6|NZ_CP053251.1_2371488_2375478_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP053251.1_2375636_2376248_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP053251.1_2376258_2377602_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP053251.1_2377692_2378985_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_013085905.1_ASM1308590v1	NZ_CP053251	Escherichia coli strain SCU-204 chromosome, complete genome	4	3850415-3850541	4	CRISPRCasFinder	no		cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	NA,NA	NA|441aa|up_9|NZ_CP053251.1_3827968_3829291_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|259aa|up_8|NZ_CP053251.1_3830580_3831357_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP053251.1_3831361_3833011_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP053251.1_3833011_3837406_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP053251.1_3837549_3838173_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP053251.1_3838169_3839858_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP053251.1_3840006_3842634_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP053251.1_3842780_3843503_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP053251.1_3843630_3847383_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP053251.1_3848078_3850364_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP053251.1_3850597_3851728_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP053251.1_3851727_3851982_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP053251.1_3852035_3852686_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP053251.1_3853148_3854225_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP053251.1_3854229_3855588_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP053251.1_3855860_3857489_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP053251.1_3857478_3858738_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP053251.1_3858734_3859925_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|304aa|down_8|NZ_CP053251.1_3860117_3861029_+	PRK09956, PRK09956, ISNCY family transposase	NA|74aa|down_9|NZ_CP053251.1_3861041_3861263_+	PRK09956, PRK09956, ISNCY family transposase
GCF_013085905.1_ASM1308590v1	NZ_CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-2, complete sequence	1	2094-2189	1	CRISPRCasFinder	no			Orphan	TATAGATTTATATAATTATATAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,RT,DEDDh,cas14j,DinG,csa3	NA|165aa|up_2|NZ_CP053252.1_276_771_-,NA|125aa|up_0|NZ_CP053252.1_1695_2070_+,NA|83aa|down_1|NZ_CP053252.1_2917_3166_+,NA|65aa|down_2|NZ_CP053252.1_3991_4186_+,NA|64aa|down_3|NZ_CP053252.1_4296_4488_+,NA|127aa|down_6|NZ_CP053252.1_6569_6950_-,NA|95aa|down_7|NZ_CP053252.1_7217_7502_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|165aa|up_2|NZ_CP053252.1_276_771_-	NA	NA|219aa|up_1|NZ_CP053252.1_946_1603_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|125aa|up_0|NZ_CP053252.1_1695_2070_+	NA	NA|218aa|down_0|NZ_CP053252.1_2220_2874_+	cd02042, ParAB_family, partition proteins ParAB family	NA|83aa|down_1|NZ_CP053252.1_2917_3166_+	NA	NA|65aa|down_2|NZ_CP053252.1_3991_4186_+	NA	NA|64aa|down_3|NZ_CP053252.1_4296_4488_+	NA	NA|381aa|down_4|NZ_CP053252.1_4484_5627_+	pfam10543, ORF6N, ORF6N domain	NA|91aa|down_5|NZ_CP053252.1_6233_6506_-	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family	NA|127aa|down_6|NZ_CP053252.1_6569_6950_-	NA	NA|95aa|down_7|NZ_CP053252.1_7217_7502_+	NA	NA|100aa|down_8|NZ_CP053252.1_7535_7835_-	pfam13744, HTH_37, Helix-turn-helix domain	NA|116aa|down_9|NZ_CP053252.1_7834_8182_-	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown]
