assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013085865.1_ASM1308586v1	NZ_CP053281	Escherichia coli strain SCU-308 chromosome, complete genome	1	630997-631114	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|55aa|down_0|NZ_CP053281.1_631187_631352_-	NA|107aa|up_9|NZ_CP053281.1_616983_617304_-	PRK09716, PRK09716, YhaC family protein	NA|313aa|up_8|NZ_CP053281.1_619251_620190_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP053281.1_620288_621278_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP053281.1_621299_622631_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP053281.1_622656_623865_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP053281.1_623898_626193_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP053281.1_626206_626596_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP053281.1_626667_628032_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP053281.1_628306_629638_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP053281.1_629665_630976_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP053281.1_631187_631352_-	NA	NA|234aa|down_1|NZ_CP053281.1_631374_632076_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP053281.1_632180_633077_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP053281.1_633127_633484_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP053281.1_633725_634091_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP053281.1_634383_635370_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP053281.1_635439_635922_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP053281.1_636017_636317_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP053281.1_636306_636711_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP053281.1_636713_637019_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_013085865.1_ASM1308586v1	NZ_CP053281	Escherichia coli strain SCU-308 chromosome, complete genome	2	1084346-1085167	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	9,13,13	13	TypeI-E	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|121aa|up_3|NZ_CP053281.1_1081243_1081606_-,NA	NA|745aa|up_9|NZ_CP053281.1_1074179_1076414_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP053281.1_1076491_1076740_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP053281.1_1076739_1077075_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP053281.1_1077145_1077937_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP053281.1_1078164_1079802_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP053281.1_1079889_1081188_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|NZ_CP053281.1_1081243_1081606_-	NA	NA|302aa|up_2|NZ_CP053281.1_1081641_1082547_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP053281.1_1082560_1083163_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP053281.1_1083334_1084006_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|185aa|down_0|NZ_CP053281.1_1085805_1086360_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|121aa|down_1|NZ_CP053281.1_1086399_1086762_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP053281.1_1087080_1088880_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP053281.1_1088879_1090592_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP053281.1_1090665_1091400_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_5|NZ_CP053281.1_1091664_1091817_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|down_6|NZ_CP053281.1_1092013_1094713_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_7|NZ_CP053281.1_1094810_1096373_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|down_8|NZ_CP053281.1_1096369_1096906_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|down_9|NZ_CP053281.1_1096920_1097976_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_013085865.1_ASM1308586v1	NZ_CP053281	Escherichia coli strain SCU-308 chromosome, complete genome	3	1100672-1101433	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	TypeI-E	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA	NA|245aa|up_9|NZ_CP053281.1_1090665_1091400_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP053281.1_1091664_1091817_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP053281.1_1092013_1094713_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP053281.1_1094810_1096373_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP053281.1_1096369_1096906_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP053281.1_1096920_1097976_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP053281.1_1097986_1098733_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP053281.1_1098714_1099365_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP053281.1_1099361_1100285_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP053281.1_1100281_1100575_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP053281.1_1101515_1102553_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP053281.1_1102804_1103713_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP053281.1_1103714_1105142_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP053281.1_1105141_1105747_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP053281.1_1105796_1106120_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP053281.1_1106313_1106625_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP053281.1_1106643_1107354_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP053281.1_1107353_1107833_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP053281.1_1107829_1108879_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP053281.1_1108859_1109621_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_013085865.1_ASM1308586v1	NZ_CP053281	Escherichia coli strain SCU-308 chromosome, complete genome	4	2322495-2322618	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|30aa|down_7|NZ_CP053281.1_2331513_2331603_+	NA|79aa|up_9|NZ_CP053281.1_2311402_2311639_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP053281.1_2311949_2313362_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP053281.1_2313918_2314128_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|701aa|up_6|NZ_CP053281.1_2315229_2317332_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP053281.1_2317344_2317983_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP053281.1_2318046_2318715_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP053281.1_2318711_2319497_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP053281.1_2319500_2320313_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP053281.1_2320324_2321929_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP053281.1_2322054_2322360_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP053281.1_2322932_2324189_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP053281.1_2324229_2325603_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP053281.1_2325817_2326459_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP053281.1_2326498_2327647_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP053281.1_2327936_2329148_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP053281.1_2329260_2330193_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP053281.1_2330189_2331215_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP053281.1_2331513_2331603_+	NA	NA|390aa|down_8|NZ_CP053281.1_2331768_2332938_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP053281.1_2333083_2333665_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_013085865.1_ASM1308586v1	NZ_CP053281	Escherichia coli strain SCU-308 chromosome, complete genome	5	2945570-2945661	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA|70aa|up_9|NZ_CP053281.1_2934820_2935030_-,NA	NA|70aa|up_9|NZ_CP053281.1_2934820_2935030_-	NA	NA|1321aa|up_8|NZ_CP053281.1_2935084_2939047_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053281.1_2939086_2939725_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053281.1_2940012_2941104_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053281.1_2941103_2941796_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053281.1_2941807_2942194_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053281.1_2942201_2943002_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053281.1_2943011_2943602_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053281.1_2943612_2944107_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053281.1_2944127_2945456_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053281.1_2946084_2946681_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053281.1_2946701_2946929_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053281.1_2946966_2948208_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP053281.1_2950017_2950938_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP053281.1_2950937_2951243_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP053281.1_2951335_2951935_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP053281.1_2951931_2954478_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP053281.1_2954477_2955650_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP053281.1_2955779_2956472_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP053281.1_2956444_2957473_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_013085865.1_ASM1308586v1	NZ_CP053281	Escherichia coli strain SCU-308 chromosome, complete genome	6	4144952-4145039	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	Orphan	TTTTATCCGATAACTATAATGCTATAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,RT	NA,NA|260aa|down_0|NZ_CP053281.1_4146521_4147301_+	NA|1074aa|up_9|NZ_CP053281.1_4129587_4132809_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|up_8|NZ_CP053281.1_4132826_4133975_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|305aa|up_7|NZ_CP053281.1_4135417_4136332_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|up_6|NZ_CP053281.1_4136397_4137348_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|up_5|NZ_CP053281.1_4137349_4137799_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|up_4|NZ_CP053281.1_4137886_4138381_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|up_3|NZ_CP053281.1_4138380_4141197_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|up_2|NZ_CP053281.1_4141239_4142181_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|73aa|up_1|NZ_CP053281.1_4142188_4142407_-	pfam10837, DUF2575, Protein of unknown function (DUF2575)	NA|88aa|up_0|NZ_CP053281.1_4142509_4142773_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|260aa|down_0|NZ_CP053281.1_4146521_4147301_+	NA	NA|300aa|down_1|NZ_CP053281.1_4147339_4148239_-	PRK11062, nhaR, transcriptional activator NhaR; Provisional	NA|389aa|down_2|NZ_CP053281.1_4148304_4149471_-	PRK09561, nhaA, sodium/proton antiporter NhaA	NA|70aa|down_3|NZ_CP053281.1_4150001_4150211_+	pfam01848, HOK_GEF, Hok/gef family	NA|377aa|down_4|NZ_CP053281.1_4150314_4151445_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|639aa|down_5|NZ_CP053281.1_4151533_4153450_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|135aa|down_6|NZ_CP053281.1_4153826_4154231_+	PRK10154, PRK10154, DUF2541 family protein	NA|238aa|down_7|NZ_CP053281.1_4154256_4154970_+	PRK10236, PRK10236, acidic protein MsyB	NA|189aa|down_8|NZ_CP053281.1_4155118_4155685_+	PRK10659, PRK10659, acetate uptake transporter	NA|196aa|down_9|NZ_CP053281.1_4155719_4156307_-	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional
