assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013085205.1_ASM1308520v1	NZ_CP053245	Escherichia coli strain SCU-485 chromosome, complete genome	1	302362-302475	1	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|217aa|up_9|NZ_CP053245.1_279263_279914_+	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|441aa|up_8|NZ_CP053245.1_279910_281233_+	pfam02667, SCFA_trans, Short chain fatty acid transporter	NA|395aa|up_7|NZ_CP053245.1_281263_282448_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_6|NZ_CP053245.1_282521_283298_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_5|NZ_CP053245.1_283302_284952_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|208aa|up_4|NZ_CP053245.1_289490_290114_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_3|NZ_CP053245.1_290110_291799_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_2|NZ_CP053245.1_291947_294575_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_1|NZ_CP053245.1_294721_295444_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|762aa|up_0|NZ_CP053245.1_300024_302310_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP053245.1_302499_303630_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP053245.1_303629_303884_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP053245.1_303937_304588_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP053245.1_304790_305867_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP053245.1_305871_307230_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP053245.1_307502_309131_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP053245.1_309120_310380_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP053245.1_310376_311567_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|320aa|down_8|NZ_CP053245.1_311759_312719_+	PRK09956, PRK09956, ISNCY family transposase	NA|62aa|down_9|NZ_CP053245.1_312731_312917_+	PRK09956, PRK09956, ISNCY family transposase
GCF_013085205.1_ASM1308520v1	NZ_CP053245	Escherichia coli strain SCU-485 chromosome, complete genome	2	1978972-1979173	1	PILER-CR	no		DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	36	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|252aa|up_9|NZ_CP053245.1_1970521_1971277_+	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|202aa|up_8|NZ_CP053245.1_1971290_1971896_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|547aa|up_7|NZ_CP053245.1_1971892_1973533_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed	NA|90aa|up_6|NZ_CP053245.1_1973611_1973881_+	PRK03554, tatA, Sec-independent protein translocase subunit TatA	NA|172aa|up_5|NZ_CP053245.1_1973884_1974400_+	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB	NA|259aa|up_4|NZ_CP053245.1_1974402_1975179_+	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|261aa|up_3|NZ_CP053245.1_1975220_1976003_+	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|163aa|up_2|NZ_CP053245.1_1975999_1976488_-	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH	NA|498aa|up_1|NZ_CP053245.1_1976654_1978148_+	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase	NA|234aa|up_0|NZ_CP053245.1_1978193_1978895_+	PRK08051, fre, FMN reductase; Validated	NA|388aa|down_0|NZ_CP053245.1_1979177_1980341_-	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed	NA|730aa|down_1|NZ_CP053245.1_1980350_1982540_-	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB	NA|444aa|down_2|NZ_CP053245.1_1982729_1984061_+	PRK13607, PRK13607, proline dipeptidase; Provisional	NA|205aa|down_3|NZ_CP053245.1_1984060_1984675_+	PRK11568, PRK11568, IMPACT family protein	NA|484aa|down_4|NZ_CP053245.1_1984713_1986165_+	PRK10750, PRK10750, Trk system potassium transporter TrkH	NA|182aa|down_5|NZ_CP053245.1_1986176_1986722_+	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA|176aa|down_6|NZ_CP053245.1_1992302_1992830_-	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional	NA|195aa|down_7|NZ_CP053245.1_1992811_1993396_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|90aa|down_8|NZ_CP053245.1_1993465_1993735_+	pfam06288, DUF1040, Protein of unknown function (DUF1040)	NA|329aa|down_9|NZ_CP053245.1_1993811_1994798_+	PRK11768, PRK11768, serine/threonine protein kinase
GCF_013085205.1_ASM1308520v1	NZ_CP053245	Escherichia coli strain SCU-485 chromosome, complete genome	3	2468669-2468808	2	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|468aa|up_9|NZ_CP053245.1_2455750_2457154_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|335aa|up_8|NZ_CP053245.1_2457210_2458215_-	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated	NA|315aa|up_7|NZ_CP053245.1_2458225_2459170_-	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|407aa|up_6|NZ_CP053245.1_2459180_2460401_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|335aa|up_5|NZ_CP053245.1_2461578_2462583_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP053245.1_2462744_2463161_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP053245.1_2463338_2463842_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|396aa|up_2|NZ_CP053245.1_2464034_2465222_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP053245.1_2465268_2468124_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP053245.1_2468123_2468567_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP053245.1_2468824_2470336_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP053245.1_2470602_2471703_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP053245.1_2471702_2472785_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP053245.1_2472945_2474448_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|333aa|down_4|NZ_CP053245.1_2474525_2475524_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|440aa|down_5|NZ_CP053245.1_2475590_2476910_-	TIGR00791, Gluconate_permease, gluconate transporter	NA|255aa|down_6|NZ_CP053245.1_2476974_2477739_-	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|344aa|down_7|NZ_CP053245.1_2477762_2478794_-	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|188aa|down_8|NZ_CP053245.1_2479010_2479574_+	PRK09825, idnK, gluconokinase	NA|340aa|down_9|NZ_CP053245.1_2479577_2480597_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)
GCF_013085205.1_ASM1308520v1	NZ_CP053245	Escherichia coli strain SCU-485 chromosome, complete genome	4	2971176-2971304	3	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Orphan	GCCGGATGCGACATGAATGCCTTATCCGGCCTACGA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|491aa|up_9|NZ_CP053245.1_2958678_2960151_-	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional	NA|196aa|up_8|NZ_CP053245.1_2960164_2960752_-	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|678aa|up_7|NZ_CP053245.1_2960880_2962914_+	PRK09928, PRK09928, choline transport protein BetT; Provisional	NA|363aa|up_6|NZ_CP053245.1_2963789_2964878_+	smart00052, EAL, Putative diguanylate phosphodiesterase	NA|311aa|up_5|NZ_CP053245.1_2964919_2965852_-	PRK10094, PRK10094, HTH-type transcriptional activator AllS	NA|166aa|up_4|NZ_CP053245.1_2965943_2966441_-	pfam06496, DUF1097, Protein of unknown function (DUF1097)	NA|202aa|up_3|NZ_CP053245.1_2966698_2967304_+	sd00045, ANK, ankyrin repeats	NA|288aa|up_2|NZ_CP053245.1_2967343_2968207_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|516aa|up_1|NZ_CP053245.1_2968196_2969744_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|473aa|up_0|NZ_CP053245.1_2969743_2971162_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|317aa|down_0|NZ_CP053245.1_2971398_2972349_+	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|461aa|down_1|NZ_CP053245.1_2972358_2973741_+	PRK06846, PRK06846, putative deaminase; Validated	NA|350aa|down_2|NZ_CP053245.1_2974117_2975167_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|168aa|down_3|NZ_CP053245.1_2976058_2976562_-	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|86aa|down_4|NZ_CP053245.1_2976887_2977145_+	PRK09929, PRK09929, hypothetical protein; Provisional	NA|529aa|down_5|NZ_CP053245.1_2977245_2978832_-	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|297aa|down_6|NZ_CP053245.1_2979070_2979961_+	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|390aa|down_7|NZ_CP053245.1_2980120_2981290_+	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|484aa|down_8|NZ_CP053245.1_2981323_2982775_+	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|608aa|down_9|NZ_CP053245.1_2982814_2984638_+	PRK10524, prpE, propionyl-CoA synthetase; Provisional
GCF_013085205.1_ASM1308520v1	NZ_CP053245	Escherichia coli strain SCU-485 chromosome, complete genome	5	3526318-3527128	2,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	12,13,13	13	TypeI-F	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|551aa|up_9|NZ_CP053245.1_3512898_3514551_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP053245.1_3514694_3515594_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP053245.1_3515914_3516610_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP053245.1_3517035_3518694_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP053245.1_3518690_3519647_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP053245.1_3519797_3520913_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP053245.1_3520909_3522856_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP053245.1_3522930_3523155_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP053245.1_3523477_3523798_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP053245.1_3523828_3526105_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|down_0|NZ_CP053245.1_3527300_3528284_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|down_1|NZ_CP053245.1_3528280_3531514_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|down_2|NZ_CP053245.1_3531843_3533151_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|down_3|NZ_CP053245.1_3533147_3534071_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|down_4|NZ_CP053245.1_3534081_3535083_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|down_5|NZ_CP053245.1_3535093_3535648_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_6|NZ_CP053245.1_3536750_3536969_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_7|NZ_CP053245.1_3537253_3537958_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_8|NZ_CP053245.1_3537999_3539721_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_9|NZ_CP053245.1_3539721_3541488_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
GCF_013085205.1_ASM1308520v1	NZ_CP053245	Escherichia coli strain SCU-485 chromosome, complete genome	6	3536190-3536638	3,5,2	PILER-CR,CRISPRCasFinder,CRT	no	cas1,cas3f,cas8f,cas5f,cas7f,cas6f	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	Type I-F	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	6,7,7	7	TypeI-F	DEDDh,cas3,csa3,cas14j,DinG,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,RT	NA,NA	NA|649aa|up_9|NZ_CP053245.1_3520909_3522856_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_8|NZ_CP053245.1_3522930_3523155_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_7|NZ_CP053245.1_3523477_3523798_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_6|NZ_CP053245.1_3523828_3526105_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	cas1|328aa|up_5|NZ_CP053245.1_3527300_3528284_+	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	cas3f|1078aa|up_4|NZ_CP053245.1_3528280_3531514_+	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas8f|436aa|up_3|NZ_CP053245.1_3531843_3533151_+	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas5f|308aa|up_2|NZ_CP053245.1_3533147_3534071_+	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas7f|334aa|up_1|NZ_CP053245.1_3534081_3535083_+	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas6f|185aa|up_0|NZ_CP053245.1_3535093_3535648_+	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	NA|73aa|down_0|NZ_CP053245.1_3536750_3536969_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP053245.1_3537253_3537958_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP053245.1_3537999_3539721_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP053245.1_3539721_3541488_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP053245.1_3541610_3542576_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP053245.1_3543119_3543614_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1356aa|down_6|NZ_CP053245.1_3543748_3547816_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP053245.1_3547974_3548586_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP053245.1_3548596_3549940_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP053245.1_3550030_3551323_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
