The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047301	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 1, complete sequence	3058772	648851	655468	3058772		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|648851_649985_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366574.1|649996_651247_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|651346_651796_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|651821_652925_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|652929_653583_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|653623_654733_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|654997_655468_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP047301	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 1, complete sequence	3058772	1132105	1183471	3058772	transposase,integrase,tail	Vibrio_phage(50.0%)	38	1176583:1176597	1190563:1190577
WP_000992438.1|1132105_1133863_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q5ZR04	Pseudomonas_phage	34.5	1.6e-91
WP_001064711.1|1134946_1135408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001059182.1|1135404_1135638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000879671.1|1136217_1136592_+	middle operon regulator	NA	NA	NA	NA	NA
WP_000035502.1|1136578_1136899_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000059473.1|1136917_1137496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000401420.1|1137556_1137928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000290080.1|1137976_1138336_+|tail	phage tail assembly protein	tail	A0A2I7S9E0	Vibrio_phage	67.8	3.7e-40
WP_001909624.1|1138551_1139511_+	tape measure protein	NA	A0A2I7S9D9	Vibrio_phage	73.1	2.3e-116
WP_086010879.1|1139553_1140730_+|transposase	IS3-like element ISVch4 family transposase	transposase	Q716C2	Shigella_phage	65.1	1.5e-117
WP_000213836.1|1140727_1141423_+	hypothetical protein	NA	A0A2I7S9D9	Vibrio_phage	35.4	1.2e-18
WP_000148675.1|1141652_1142129_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_001211490.1|1142272_1142449_+	AlpA family transcriptional regulator	NA	A0A1V0E8E5	Vibrio_phage	51.9	2.8e-09
WP_001211290.1|1142595_1144941_-	sialidase	NA	NA	NA	NA	NA
WP_001185226.1|1145364_1146501_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_001259414.1|1146504_1147368_-	N-acetylmannosamine kinase	NA	NA	NA	NA	NA
WP_001889711.1|1147355_1148078_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_000849284.1|1148292_1149258_+	sialic acid TRAP transporter solute-binding subunit SiaP	NA	NA	NA	NA	NA
WP_001889698.1|1149308_1149830_+	sialic acid TRAP transporter small permease SiaQ	NA	NA	NA	NA	NA
WP_000233105.1|1149837_1151121_+	sialic acid TRAP transporter large permease SiaM	NA	NA	NA	NA	NA
WP_000736956.1|1151158_1152055_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_001052933.1|1152183_1153020_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001056548.1|1153201_1154356_+	N-acetylneuraminate epimerase	NA	NA	NA	NA	NA
WP_001008007.1|1154370_1155441_+	YjhT family mutarotase	NA	NA	NA	NA	NA
WP_001277248.1|1155505_1156366_-	YafY family transcriptional regulator	NA	NA	NA	NA	NA
WP_000251914.1|1156438_1160056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000258536.1|1160037_1162101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000350101.1|1162241_1164623_+	SAM-dependent DNA methyltransferase	NA	A0A220A2U4	Liberibacter_phage	29.0	5.6e-23
WP_001122813.1|1165829_1167041_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
WP_000301909.1|1167281_1168694_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_000502257.1|1168686_1170678_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_000253901.1|1170714_1173774_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	24.0	3.5e-22
WP_001996894.1|1173818_1175939_+	anti-phage defense ZorAB system ZorA	NA	NA	NA	NA	NA
WP_001252511.1|1175931_1176666_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
1176583:1176597	attL	AAGAGCCAGAATAGG	NA	NA	NA	NA
WP_000055826.1|1176662_1178114_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_000424158.1|1178104_1181554_+	restriction endonuclease	NA	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	25.9	7.0e-27
WP_001881542.1|1181684_1182140_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	58.4	7.8e-43
WP_000002768.1|1182235_1183471_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	62.2	1.2e-146
1190563:1190577	attR	AAGAGCCAGAATAGG	NA	NA	NA	NA
>prophage 3
NZ_CP047301	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 1, complete sequence	3058772	1500541	1533029	3058772	coat	Vibrio_phage(52.63%)	24	NA	NA
WP_001161489.1|1500541_1500709_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000005769.1|1501907_1502459_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881266.1|1502635_1504204_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000512956.1|1504223_1504493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052672.1|1504622_1505315_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1505392_1505560_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|1505552_1506137_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000693566.1|1506626_1506965_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1507090_1508170_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911551.1|1508171_1508522_+	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000053920.1|1508615_1508840_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_000693566.1|1509351_1509690_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1509815_1510895_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911548.1|1510896_1511256_+	hypothetical protein	NA	A0A0N9HE73	Vibrio_phage	100.0	4.4e-65
WP_000493022.1|1511390_1511639_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001268534.1|1511745_1512933_+|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000979342.1|1512929_1513223_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_000021616.1|1513219_1514419_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_001881225.1|1514510_1515287_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000593519.1|1515283_1515658_+	cholera enterotoxin binding subunit CtxB	NA	A0A142I6Y1	Vibrio_phage	100.0	5.9e-65
WP_000517815.1|1516115_1529639_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|1529662_1530124_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001906284.1|1530149_1530497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149591715.1|1530923_1533029_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
>prophage 4
NZ_CP047301	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 1, complete sequence	3058772	2271405	2278598	3058772		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2271405_2271834_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2272037_2273327_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2273546_2273741_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2273789_2274128_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2274141_2275992_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2276015_2276531_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2276579_2276903_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2276963_2277347_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2277383_2278598_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 5
NZ_CP047301	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 1, complete sequence	3058772	2405759	2465169	3058772	transposase,protease	uncultured_virus(42.86%)	47	NA	NA
WP_001920874.1|2405759_2407259_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_000546748.1|2407248_2408004_+	ATP-binding protein	NA	A0A2L1IVB6	Escherichia_phage	36.9	5.5e-33
WP_001918292.1|2408134_2409700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000805082.1|2409790_2413483_-	conjugal transfer protein TraN	NA	NA	NA	NA	NA
WP_000735886.1|2413485_2414514_-	TraU family protein	NA	NA	NA	NA	NA
WP_001189235.1|2414497_2415622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001166558.1|2415632_2416145_-	S26 family signal peptidase	NA	NA	NA	NA	NA
WP_001044650.1|2416128_2416476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000648042.1|2416468_2418868_-	type IV secretion system protein TraC	NA	NA	NA	NA	NA
WP_001228926.1|2418867_2419560_-	DsbC family protein	NA	NA	NA	NA	NA
WP_000356587.1|2419691_2420630_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_000095578.1|2420622_2421414_-	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA	NA
WP_000180223.1|2421634_2422021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001944091.1|2422017_2422590_-	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA	NA
WP_000647305.1|2422664_2423954_-	conjugal transfer protein TraB	NA	NA	NA	NA	NA
WP_001911237.1|2423956_2424853_-	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA	NA
WP_000667170.1|2424836_2425463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000433891.1|2425459_2425741_-	type IV conjugative transfer system protein TraL	NA	NA	NA	NA	NA
WP_001167482.1|2426029_2426617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000033757.1|2426643_2427279_-	DUF4400 domain-containing protein	NA	NA	NA	NA	NA
WP_000546514.1|2427265_2427826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000661888.1|2427835_2429656_-	conjugative transfer system coupling protein TraD	NA	NA	NA	NA	NA
WP_000475916.1|2429704_2431855_-	TraI domain-containing protein	NA	NA	NA	NA	NA
WP_001125250.1|2431976_2432792_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_000158025.1|2432826_2433597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000279702.1|2433623_2435675_-|protease	protease Lon-related BREX system protein BrxL	protease	NA	NA	NA	NA
WP_000567536.1|2435713_2438017_-	PglZ domain-containing protein	NA	NA	NA	NA	NA
WP_000779609.1|2438029_2441770_-	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA	NA
WP_000152592.1|2441774_2445464_-	BREX system P-loop protein BrxC	NA	NA	NA	NA	NA
WP_001115853.1|2445476_2446025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000653856.1|2446008_2446809_-	DUF1819 family protein	NA	NA	NA	NA	NA
WP_000180270.1|2446826_2447747_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_000284114.1|2448064_2448364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000196209.1|2448451_2449357_-	DNA polymerase III subunit epsilon	NA	A0A2H4P6W5	Pseudomonas_phage	26.4	3.1e-06
WP_000182836.1|2449740_2449998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000116661.1|2449996_2450446_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A218MND2	uncultured_virus	57.1	4.1e-36
WP_001883756.1|2450453_2450723_+	hypothetical protein	NA	A0A218MNF2	uncultured_virus	76.3	9.3e-28
WP_001122813.1|2451436_2452648_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	51.4	4.2e-51
WP_001043260.1|2454462_2455278_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA	NA
WP_001082316.1|2455338_2456142_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	Q75ZG1	Hepacivirus	34.3	3.8e-24
WP_000480968.1|2456141_2456978_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_001120891.1|2456949_2457489_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_001255015.1|2457600_2457906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000214119.1|2457933_2459148_-	chloramphenicol/florfenicol efflux MFS transporter FloR	NA	S4TR35	Salmonella_phage	28.7	4.2e-19
WP_001447541.1|2459364_2460249_-	DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_001120888.1|2460279_2461773_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000985631.1|2462190_2465169_-|transposase	Tn3 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP047301	Vibrio cholerae O1 biovar El Tor strain DRC-193A chromosome 1, complete sequence	3058772	2608056	2615280	3058772		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2608056_2608944_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001894770.1|2609211_2611800_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116737.1|2611892_2612900_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|2612973_2613909_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2613908_2614535_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2614527_2615280_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
