The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047297	Vibrio cholerae O1 biovar El Tor strain C6709 chromosome 1, complete sequence	3020257	658179	664796	3020257		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|658179_659313_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366574.1|659324_660575_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|660674_661124_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|661149_662253_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|662257_662911_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|662951_664061_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|664325_664796_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP047297	Vibrio cholerae O1 biovar El Tor strain C6709 chromosome 1, complete sequence	3020257	1489408	1497135	3020257		Rhizobium_phage(14.29%)	9	NA	NA
WP_000046513.1|1489408_1491043_+	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
WP_000983185.1|1491042_1493097_+	hypothetical protein	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
WP_000467314.1|1493121_1493553_+	tellurite resistance TerB family protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
WP_001044551.1|1493746_1494607_+	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
WP_001912807.1|1494789_1495074_+	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	3.9e-08
WP_000784089.1|1495070_1495328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000275003.1|1495460_1496054_+	deoxynucleoside kinase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
WP_000576446.1|1496258_1496528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001146354.1|1496547_1497135_+	deoxynucleoside kinase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
>prophage 3
NZ_CP047297	Vibrio cholerae O1 biovar El Tor strain C6709 chromosome 1, complete sequence	3020257	1501790	1511532	3020257	head,protease,capsid,portal,tail,terminase	Vibrio_phage(42.86%)	12	NA	NA
WP_000858033.1|1501790_1502435_-	antirestriction protein ArdA	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
WP_000243876.1|1502645_1502834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080004477.1|1503304_1503715_+|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JP17	Morganella_phage	31.6	5.8e-05
WP_001994028.1|1503857_1504301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001046237.1|1504297_1504978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000165579.1|1505005_1505221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001070130.1|1505411_1507172_+|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
WP_000523754.1|1507181_1508507_+|portal	phage portal protein	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
WP_000944879.1|1508469_1509318_+|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
WP_000667008.1|1509416_1510607_+|capsid	phage major capsid protein	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
WP_000020008.1|1510621_1511173_+	hypothetical protein	NA	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
WP_001252475.1|1511184_1511532_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
>prophage 4
NZ_CP047297	Vibrio cholerae O1 biovar El Tor strain C6709 chromosome 1, complete sequence	3020257	1555789	1588407	3020257	coat	Vibrio_phage(47.37%)	24	NA	NA
WP_001161489.1|1555789_1555957_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000005769.1|1557155_1557707_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881266.1|1557883_1559452_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000512956.1|1559471_1559741_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052672.1|1559870_1560563_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1560640_1560808_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|1560800_1561385_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000693566.1|1561874_1562213_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1562338_1563418_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000842207.1|1563419_1563776_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000493022.1|1563911_1564160_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001268534.1|1564266_1565454_+|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000979342.1|1565450_1565744_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_000021616.1|1565740_1566940_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_001881225.1|1567038_1567815_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000593522.1|1567811_1568186_+	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_000693566.1|1568798_1569137_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1569262_1570342_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911551.1|1570343_1570694_+	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000053920.1|1570787_1571012_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_000517826.1|1571379_1585017_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|1585040_1585502_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001906284.1|1585527_1585875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149591715.1|1586301_1588407_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
>prophage 5
NZ_CP047297	Vibrio cholerae O1 biovar El Tor strain C6709 chromosome 1, complete sequence	3020257	2327403	2334596	3020257		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2327403_2327832_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2328035_2329325_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2329544_2329739_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2329787_2330126_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2330139_2331990_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2332013_2332529_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2332577_2332901_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2332961_2333345_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2333381_2334596_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 6
NZ_CP047297	Vibrio cholerae O1 biovar El Tor strain C6709 chromosome 1, complete sequence	3020257	2566224	2573448	3020257		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2566224_2567112_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001894770.1|2567379_2569968_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116737.1|2570060_2571068_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|2571141_2572077_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2572076_2572703_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2572695_2573448_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
>prophage 7
NZ_CP047297	Vibrio cholerae O1 biovar El Tor strain C6709 chromosome 1, complete sequence	3020257	2579617	2588235	3020257	integrase,tRNA,transposase	Vibrio_phage(33.33%)	7	2580497:2580509	2587144:2587156
WP_001220122.1|2579617_2580637_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
2580497:2580509	attL	AGCCAGCTCAGGC	NA	NA	NA	NA
WP_001145625.1|2580877_2581093_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001173892.1|2581122_2581566_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
WP_000907210.1|2581655_2583419_+	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
WP_000372618.1|2583517_2585395_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_001129565.1|2585780_2587022_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
WP_100068541.1|2587057_2588235_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.1	8.6e-118
2587144:2587156	attR	GCCTGAGCTGGCT	NA	NA	NA	NA
