The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047295	Vibrio cholerae C6706 chromosome 1, complete sequence	3015077	653005	659622	3015077		Staphylococcus_phage(66.67%)	7	NA	NA
WP_000210573.1|653005_654139_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	40.4	1.4e-64
WP_000366574.1|654150_655401_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	49.5	5.0e-100
WP_000543544.1|655500_655950_+	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_001131994.1|655975_657079_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.1	1.3e-43
WP_000493874.1|657083_657737_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	38.2	1.2e-31
WP_001122865.1|657777_658887_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.8	6.7e-64
WP_000864130.1|659151_659622_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	48.7	6.8e-34
>prophage 2
NZ_CP047295	Vibrio cholerae C6706 chromosome 1, complete sequence	3015077	1484242	1491969	3015077		Rhizobium_phage(14.29%)	9	NA	NA
WP_000046513.1|1484242_1485877_+	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	49.0	1.6e-122
WP_000983185.1|1485876_1487931_+	hypothetical protein	NA	A0A0F7DD46	Delftia_phage	40.8	7.1e-144
WP_000467314.1|1487955_1488387_+	tellurite resistance TerB family protein	NA	Q1MVI3	Enterobacteria_phage	47.9	2.1e-29
WP_001044551.1|1488580_1489441_+	exonuclease	NA	F1D0G7	Vibrio_phage	43.0	3.1e-56
WP_001912807.1|1489623_1489908_+	hypothetical protein	NA	A0A142K9B6	Gordonia_phage	51.9	3.9e-08
WP_000784089.1|1489904_1490162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000275003.1|1490294_1490888_+	deoxynucleoside kinase	NA	A0A249Y6S3	Cherax_quadricarinatus_iridovirus	30.0	3.7e-08
WP_000576446.1|1491092_1491362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001146354.1|1491381_1491969_+	deoxynucleoside kinase	NA	F2NYY4	Diadromus_pulchellus_ascovirus	33.1	2.1e-08
>prophage 3
NZ_CP047295	Vibrio cholerae C6706 chromosome 1, complete sequence	3015077	1496624	1506366	3015077	portal,tail,head,capsid,terminase,protease	Vibrio_phage(42.86%)	12	NA	NA
WP_000858033.1|1496624_1497269_-	antirestriction protein ArdA	NA	G0YPX7	Erwinia_phage	33.5	1.1e-10
WP_000243876.1|1497479_1497668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080004477.1|1498138_1498549_+|terminase	phage terminase small subunit P27 family	terminase	A0A1W6JP17	Morganella_phage	31.6	5.8e-05
WP_001994028.1|1498691_1499135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001046237.1|1499131_1499812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000165579.1|1499839_1500055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001070130.1|1500245_1502006_+|terminase	terminase large subunit	terminase	A0A0K1LKI4	Staphylococcus_phage	35.9	1.1e-81
WP_000523754.1|1502015_1503341_+|portal	phage portal protein	portal	M4MHV5	Vibrio_phage	38.9	1.2e-75
WP_000944879.1|1503303_1504152_+|head,protease	HK97 family phage prohead protease	head,protease	Q6JIM8	Burkholderia_virus	39.1	7.0e-29
WP_000667008.1|1504250_1505441_+|capsid	phage major capsid protein	capsid	M4MA06	Vibrio_phage	33.3	1.3e-36
WP_000020008.1|1505455_1506007_+	hypothetical protein	NA	A0A2I7QU98	Vibrio_phage	28.0	8.9e-09
WP_001252475.1|1506018_1506366_+|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
>prophage 4
NZ_CP047295	Vibrio cholerae C6706 chromosome 1, complete sequence	3015077	1550622	1583240	3015077	coat	Vibrio_phage(47.37%)	24	NA	NA
WP_001161489.1|1550622_1550790_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000005769.1|1551988_1552540_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001881266.1|1552716_1554285_+	replication protein	NA	A7BJY2	Enterobacteria_phage	32.3	2.7e-58
WP_000512956.1|1554304_1554574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001052672.1|1554703_1555396_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001161489.1|1555473_1555641_+	hypothetical protein	NA	E3U9J0	Vibrio_phage	100.0	2.3e-13
WP_000170634.1|1555633_1556218_+	DNA-binding protein	NA	E3U9I9	Vibrio_phage	100.0	6.4e-114
WP_000693566.1|1556707_1557046_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1557171_1558251_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_000842207.1|1558252_1558609_+	hypothetical protein	NA	A0A0N9HJ67	Vibrio_phage	100.0	9.7e-65
WP_000493022.1|1558744_1558993_+	colonization factor	NA	A0A0N7F140	Vibrio_phage	100.0	8.8e-33
WP_001268534.1|1559099_1560287_+|coat	minor coat protein pIII	coat	A0A142I701	Vibrio_phage	100.0	1.4e-200
WP_000979342.1|1560283_1560577_+	accessory cholera enterotoxin	NA	A0A0F6YNQ7	Vibrio_phage	100.0	3.7e-46
WP_000021616.1|1560573_1561773_+	zonula occludens toxin ZOT	NA	A0A142I6Z1	Vibrio_phage	100.0	5.3e-240
WP_001881225.1|1561871_1562648_+	cholera enterotoxin catalytic subunit CtxA	NA	A0A142I6Y0	Vibrio_phage	100.0	1.3e-151
WP_000593522.1|1562644_1563019_+	cholera enterotoxin binding subunit CtxB	NA	Q77DH7	Vibrio_virus	100.0	7.8e-65
WP_000693566.1|1563631_1563970_-	helix-turn-helix transcriptional regulator	NA	U5TNA1	Satellite_phage	100.0	7.3e-54
WP_000743997.1|1564095_1565175_+	replication initiation factor domain-containing protein	NA	U5TQR3	Satellite_phage	100.0	2.2e-213
WP_001911551.1|1565176_1565527_+	hypothetical protein	NA	U5TMH5	Satellite_phage	100.0	1.0e-63
WP_000053920.1|1565620_1565845_+	RstC protein	NA	U5TMI6	Satellite_phage	100.0	1.1e-34
WP_000517826.1|1566212_1579850_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	NA	B3Y8K3	Vibrio_virus	100.0	8.4e-07
WP_001881196.1|1579873_1580335_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA	NA
WP_001906284.1|1580360_1580708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_149591715.1|1581134_1583240_+	RTX toxin T1SS ABC transporter subunit RtxB	NA	W8CYL7	Bacillus_phage	27.1	4.9e-39
>prophage 5
NZ_CP047295	Vibrio cholerae C6706 chromosome 1, complete sequence	3015077	2322217	2329410	3015077		Anguillid_herpesvirus(16.67%)	9	NA	NA
WP_001162850.1|2322217_2322646_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	38.4	1.0e-20
WP_000107237.1|2322849_2324139_-	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	34.3	1.7e-34
WP_000872176.1|2324358_2324553_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_001124187.1|2324601_2324940_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_001196560.1|2324953_2326804_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	41.1	5.3e-106
WP_001105747.1|2326827_2327343_-	co-chaperone HscB	NA	NA	NA	NA	NA
WP_000301571.1|2327391_2327715_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	50.5	3.0e-25
WP_000331703.1|2327775_2328159_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.2	5.4e-53
WP_000775253.1|2328195_2329410_-	IscS subfamily cysteine desulfurase	NA	A0A0H3TPH2	Faustovirus	30.5	1.1e-32
>prophage 6
NZ_CP047295	Vibrio cholerae C6706 chromosome 1, complete sequence	3015077	2561039	2568263	3015077		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_001279365.1|2561039_2561927_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	41.1	4.1e-56
WP_001894770.1|2562194_2564783_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	23.0	2.2e-33
WP_000116737.1|2564875_2565883_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	34.2	6.0e-35
WP_000177568.1|2565956_2566892_-	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	34.7	7.8e-05
WP_000002982.1|2566891_2567518_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	2.0e-36
WP_000698379.1|2567510_2568263_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	53.3	8.0e-69
>prophage 7
NZ_CP047295	Vibrio cholerae C6706 chromosome 1, complete sequence	3015077	2574432	2583050	3015077	integrase,tRNA,transposase	Vibrio_phage(33.33%)	7	2575312:2575324	2581959:2581971
WP_001220122.1|2574432_2575452_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	57.4	2.6e-107
2575312:2575324	attL	AGCCAGCTCAGGC	NA	NA	NA	NA
WP_001145625.1|2575692_2575908_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001173892.1|2575937_2576381_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	49.3	3.7e-29
WP_000907210.1|2576470_2578234_+	DNA primase	NA	A0A1S5RG58	Helicobacter_phage	30.7	1.1e-44
WP_000372618.1|2578332_2580210_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	32.9	1.5e-34
WP_001129565.1|2580595_2581837_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	47.3	9.1e-110
WP_100068541.1|2581872_2583050_-|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	65.1	8.6e-118
2581959:2581971	attR	GCCTGAGCTGGCT	NA	NA	NA	NA
