assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	1	368986-369684	1	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	TTCGCGAAGCCGATGTTGTAGCTGCCGGTGTTG	33	2	2	369274-369315|369349-369381	NZ_CP053092.1_377305-377346|NZ_CP053092.1_376120-376152	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|101aa|up_4|NZ_CP053092.1_365998_366301_+,NA|161aa|down_1|NZ_CP053092.1_379094_379577_-,NA|410aa|down_5|NZ_CP053092.1_381693_382923_+	NA|262aa|up_9|NZ_CP053092.1_360939_361725_+	PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional	NA|268aa|up_8|NZ_CP053092.1_361713_362517_-	COG4424, COG4424, Uncharacterized protein conserved in bacteria [Function unknown]	NA|466aa|up_7|NZ_CP053092.1_362526_363924_-	cd16027, SGSH, N-sulfoglucosamine sulfohydrolase (SGSH; sulfamidase)	NA|510aa|up_6|NZ_CP053092.1_364102_365632_+	pfam00934, PE, PE family	NA|76aa|up_5|NZ_CP053092.1_365774_366002_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|101aa|up_4|NZ_CP053092.1_365998_366301_+	NA	NA|74aa|up_3|NZ_CP053092.1_366348_366570_+	PHA01748, PHA01748, hypothetical protein	NA|142aa|up_2|NZ_CP053092.1_366566_366992_+	cd18755, PIN_MtVapC3_VapC21-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC3, VapC21 and related proteins	NA|211aa|up_1|NZ_CP053092.1_367127_367760_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|303aa|up_0|NZ_CP053092.1_367756_368665_+	cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs	NA|224aa|down_0|NZ_CP053092.1_378435_379107_+	TIGR02476, BluB, 5,6-dimethylbenzimidazole synthase	NA|161aa|down_1|NZ_CP053092.1_379094_379577_-	NA	NA|239aa|down_2|NZ_CP053092.1_379634_380351_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|219aa|down_3|NZ_CP053092.1_380452_381109_+	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|164aa|down_4|NZ_CP053092.1_381178_381670_-	pfam13577, SnoaL_4, SnoaL-like domain	NA|410aa|down_5|NZ_CP053092.1_381693_382923_+	NA	NA|621aa|down_6|NZ_CP053092.1_383077_384940_+	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|129aa|down_7|NZ_CP053092.1_385011_385398_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|221aa|down_8|NZ_CP053092.1_385400_386063_-	pfam11259, DUF3060, Protein of unknown function (DUF3060)	NA|295aa|down_9|NZ_CP053092.1_386123_387008_+	COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	2	631120-631257	1	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGACCACGCCGGTG	18	2	3	631138-631155|631138-631155|631222-631239	NZ_CP053092.1_22466-22483|NZ_CP053092.1_1413622-1413639|NZ_CP053092.1_975107-975124	NA	3	3	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|54aa|up_7|NZ_CP053092.1_621875_622037_-,NA|478aa|up_0|NZ_CP053092.1_628135_629569_-,NA|450aa|down_2|NZ_CP053092.1_632892_634242_-,NA|93aa|down_5|NZ_CP053092.1_635772_636051_-	NA|325aa|up_9|NZ_CP053092.1_619645_620620_+	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB	NA|406aa|up_8|NZ_CP053092.1_620661_621879_+	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]	NA|54aa|up_7|NZ_CP053092.1_621875_622037_-	NA	NA|106aa|up_6|NZ_CP053092.1_622083_622401_+	pfam14012, DUF4229, Protein of unknown function (DUF4229)	NA|582aa|up_5|NZ_CP053092.1_622547_624293_+	pfam00934, PE, PE family	NA|336aa|up_4|NZ_CP053092.1_624310_625318_-	TIGR00747, 3-oxoacyl-_synthase_3, 3-oxoacyl-(acyl-carrier-protein) synthase III	NA|293aa|up_3|NZ_CP053092.1_625399_626278_-	TIGR00751, 14-dihydroxy-2-naphthoate_octaprenyltransferase, 1,4-dihydroxy-2-naphthoate octaprenyltransferase	NA|265aa|up_2|NZ_CP053092.1_626294_627089_+	PRK07823, PRK07823, S-methyl-5'-thioadenosine phosphorylase	NA|347aa|up_1|NZ_CP053092.1_627085_628126_+	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|478aa|up_0|NZ_CP053092.1_628135_629569_-	NA	NA|211aa|down_0|NZ_CP053092.1_631580_632213_+	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|221aa|down_1|NZ_CP053092.1_632209_632872_+	COG3222, COG3222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|450aa|down_2|NZ_CP053092.1_632892_634242_-	NA	NA|381aa|down_3|NZ_CP053092.1_634253_635396_-	PRK07824, PRK07824, o-succinylbenzoate--CoA ligase	NA|101aa|down_4|NZ_CP053092.1_635410_635713_-	pfam11829, DUF3349, Protein of unknown function (DUF3349)	NA|93aa|down_5|NZ_CP053092.1_635772_636051_-	NA	NA|418aa|down_6|NZ_CP053092.1_636047_637301_-	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism]	NA|129aa|down_7|NZ_CP053092.1_637420_637807_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|295aa|down_8|NZ_CP053092.1_637869_638754_-	PRK05866, PRK05866, SDR family oxidoreductase	NA|315aa|down_9|NZ_CP053092.1_638849_639794_-	PRK08321, PRK08321, 1,4-dihydroxy-2-naphthoyl-CoA synthase
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	3	691854-691930	2	CRISPRCasFinder	no	c2c9_V-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type V-U4	TGAGGTGCGGCGTGAGCGCGGGT	23	0	0	NA	NA	NA	1	1	TypeV-U4	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|72aa|up_9|NZ_CP053092.1_677538_677754_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|136aa|up_8|NZ_CP053092.1_677750_678158_+	cd18696, PIN_MtVapC26-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC26 and related proteins	NA|229aa|up_7|NZ_CP053092.1_678217_678904_-	pfam10738, Lpp-LpqN, Probable lipoprotein LpqN	NA|878aa|up_6|NZ_CP053092.1_679057_681691_+	COG3537, COG3537, Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]	NA|796aa|up_5|NZ_CP053092.1_681713_684101_-	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region	NA|241aa|up_4|NZ_CP053092.1_684238_684961_+	COG2186, FadR, Transcriptional regulators [Transcription]	NA|266aa|up_3|NZ_CP053092.1_684957_685755_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|296aa|up_2|NZ_CP053092.1_685756_686644_+	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|405aa|up_1|NZ_CP053092.1_686649_687864_+	pfam11887, Mce4_CUP1, Cholesterol uptake porter CUP1 of Mce4, putative	NA|482aa|up_0|NZ_CP053092.1_688887_690333_+	TIGR00996, Mtu_fam_mce, virulence factor Mce family protein	NA|517aa|down_0|NZ_CP053092.1_693065_694616_+	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|131aa|down_1|NZ_CP053092.1_694667_695060_-	cd18768, PIN_MtVapC4-C5-like, VapC-like PIN domain of Mycobacterium tuberculosis VapC4, VapC5, and related proteins	NA|86aa|down_2|NZ_CP053092.1_695056_695314_-	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|412aa|down_3|NZ_CP053092.1_695496_696732_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|138aa|down_4|NZ_CP053092.1_696982_697396_-	cd18681, PIN_MtVapC27-VapC40_like, VapC-like PIN domain of Mycobacterium tuberculosis VapC27, and VapC40, and related proteins	NA|79aa|down_5|NZ_CP053092.1_697392_697629_-	COG2002, AbrB, Regulators of stationary/sporulation gene expression [Transcription]	NA|169aa|down_6|NZ_CP053092.1_697732_698239_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|157aa|down_7|NZ_CP053092.1_698352_698823_-	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB	NA|254aa|down_8|NZ_CP053092.1_698866_699628_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|104aa|down_9|NZ_CP053092.1_699684_699996_+	pfam03413, PepSY, Peptidase propeptide and YPEB domain
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	4	927196-927699	2	CRT	no	csa3	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type I-A	CGGGGCCGGNGGGGCCGG	18	0	0	NA	NA	NA	10	10	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|184aa|down_2|NZ_CP053092.1_932024_932576_-,NA|81aa|down_9|NZ_CP053092.1_939397_939640_+	NA|685aa|up_9|NZ_CP053092.1_914832_916887_-	TIGR00350, Transcriptional_regulator_LytR, cell envelope-related function transcriptional attenuator common domain	NA|390aa|up_8|NZ_CP053092.1_917052_918222_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|339aa|up_7|NZ_CP053092.1_918309_919326_-	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain	NA|214aa|up_6|NZ_CP053092.1_919487_920129_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|352aa|up_5|NZ_CP053092.1_920209_921265_+	COG3662, COG3662, Uncharacterized protein conserved in bacteria [Function unknown]	csa3|131aa|up_4|NZ_CP053092.1_921316_921709_-	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor	NA|141aa|up_3|NZ_CP053092.1_921766_922189_-	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|97aa|up_2|NZ_CP053092.1_922150_922441_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|up_1|NZ_CP053092.1_922545_923451_+	COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|up_0|NZ_CP053092.1_923469_924285_-	TIGR04255, hypothetical_protein, TIGR04255 family protein	NA|883aa|down_0|NZ_CP053092.1_928283_930932_-	pfam00934, PE, PE family	NA|215aa|down_1|NZ_CP053092.1_931399_932044_+	pfam14032, PknH_C, PknH-like extracellular domain	NA|184aa|down_2|NZ_CP053092.1_932024_932576_-	NA	NA|421aa|down_3|NZ_CP053092.1_932693_933955_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|218aa|down_4|NZ_CP053092.1_934083_934737_-	COG4849, COG4849, Predicted nucleotidyltransferase [General function prediction    only]	NA|343aa|down_5|NZ_CP053092.1_934807_935836_-	COG4861, COG4861, Uncharacterized protein conserved in bacteria [Function unknown]	NA|257aa|down_6|NZ_CP053092.1_936524_937295_+	pfam01427, Peptidase_M15, D-ala-D-ala dipeptidase	NA|271aa|down_7|NZ_CP053092.1_937381_938194_+	pfam13847, Methyltransf_31, Methyltransferase domain	NA|287aa|down_8|NZ_CP053092.1_938261_939122_-	TIGR01250, Proline_iminopeptidase, proline-specific peptidase, Bacillus coagulans-type subfamily	NA|81aa|down_9|NZ_CP053092.1_939397_939640_+	NA
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	5	1193221-1193329	3	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GACAGCCAGCCGGCTGACCCGCCGT	25	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA	NA|544aa|up_9|NZ_CP053092.1_1182579_1184211_+	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles	NA|355aa|up_8|NZ_CP053092.1_1184286_1185351_+	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]	NA|158aa|up_7|NZ_CP053092.1_1185403_1185877_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|up_6|NZ_CP053092.1_1185910_1186774_+	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type	NA|286aa|up_5|NZ_CP053092.1_1186778_1187636_+	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|361aa|up_4|NZ_CP053092.1_1187636_1188719_-	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6	NA|140aa|up_3|NZ_CP053092.1_1188799_1189219_-	pfam17301, LpqV, Putative lipoprotein LpqV	NA|189aa|up_2|NZ_CP053092.1_1189330_1189897_+	cd10548, cupin_CDO, cysteine dioxygenase, cupin domain	NA|132aa|up_1|NZ_CP053092.1_1189893_1190289_+	cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain	NA|671aa|up_0|NZ_CP053092.1_1190316_1192329_-	pfam00934, PE, PE family	NA|588aa|down_0|NZ_CP053092.1_1194414_1196178_-	COG4425, COG4425, Predicted membrane protein [Function unknown]	NA|258aa|down_1|NZ_CP053092.1_1196174_1196948_-	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional	NA|346aa|down_2|NZ_CP053092.1_1196959_1197997_-	PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional	NA|279aa|down_3|NZ_CP053092.1_1198183_1199020_+	COG4760, COG4760, Predicted membrane protein [Function unknown]	NA|284aa|down_4|NZ_CP053092.1_1199135_1199987_+	pfam18741, MTES_1575, REase_MTES_1575	NA|406aa|down_5|NZ_CP053092.1_1200060_1201278_-	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase	NA|315aa|down_6|NZ_CP053092.1_1201330_1202275_-	cd01836, FeeA_FeeB_like, SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases	NA|298aa|down_7|NZ_CP053092.1_1202671_1203565_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|465aa|down_8|NZ_CP053092.1_1203621_1205016_+	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|241aa|down_9|NZ_CP053092.1_1205217_1205940_+	pfam06271, RDD, RDD family
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	6	1572318-1573213	4	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	1	1	1572518-1572539	NZ_CP053092.1_1213968-1213947	NA	12	12	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|191aa|up_7|NZ_CP053092.1_1563826_1564399_+,NA	NA|103aa|up_9|NZ_CP053092.1_1561596_1561905_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP053092.1_1561901_1563521_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NZ_CP053092.1_1563826_1564399_+	NA	NA|209aa|up_6|NZ_CP053092.1_1564533_1565160_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP053092.1_1565225_1565558_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP053092.1_1565573_1566830_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP053092.1_1566957_1568169_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP053092.1_1568241_1569720_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP053092.1_1569716_1571102_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP053092.1_1571179_1572214_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP053092.1_1574240_1574642_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP053092.1_1574638_1574896_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP053092.1_1574978_1575938_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP053092.1_1575962_1576925_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP053092.1_1577058_1577661_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP053092.1_1577741_1579709_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP053092.1_1579726_1580551_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP053092.1_1580719_1581202_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP053092.1_1581273_1582098_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP053092.1_1582294_1583233_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	7	1573301-1573386	5	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGTTGCCGCCGGCACCGCCGTCGCCGAT	32	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|191aa|up_7|NZ_CP053092.1_1563826_1564399_+,NA	NA|103aa|up_9|NZ_CP053092.1_1561596_1561905_+	pfam00934, PE, PE family	NA|540aa|up_8|NZ_CP053092.1_1561901_1563521_+	COG5651, COG5651, PPE-repeat proteins [Cell motility and secretion]	NA|191aa|up_7|NZ_CP053092.1_1563826_1564399_+	NA	NA|209aa|up_6|NZ_CP053092.1_1564533_1565160_+	PRK00300, gmk, guanylate kinase; Provisional	NA|111aa|up_5|NZ_CP053092.1_1565225_1565558_+	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit	NA|419aa|up_4|NZ_CP053092.1_1565573_1566830_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|404aa|up_3|NZ_CP053092.1_1566957_1568169_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|493aa|up_2|NZ_CP053092.1_1568241_1569720_-	COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]	NA|462aa|up_1|NZ_CP053092.1_1569716_1571102_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|345aa|up_0|NZ_CP053092.1_1571179_1572214_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|134aa|down_0|NZ_CP053092.1_1574240_1574642_-	cd18741, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily	NA|86aa|down_1|NZ_CP053092.1_1574638_1574896_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|320aa|down_2|NZ_CP053092.1_1574978_1575938_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|321aa|down_3|NZ_CP053092.1_1575962_1576925_-	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold	NA|201aa|down_4|NZ_CP053092.1_1577058_1577661_+	COG3714, COG3714, Predicted membrane protein [Function unknown]	NA|656aa|down_5|NZ_CP053092.1_1577741_1579709_+	PRK14873, PRK14873, primosomal protein N'	NA|275aa|down_6|NZ_CP053092.1_1579726_1580551_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|161aa|down_7|NZ_CP053092.1_1580719_1581202_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|275aa|down_8|NZ_CP053092.1_1581273_1582098_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|313aa|down_9|NZ_CP053092.1_1582294_1583233_+	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	8	1636942-1637168	1	PILER-CR	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CGGCGGCGCCGTTGGCGCCGTTGCCGCCGGCGCCGCCGTTGCCGCCG	47	0	0	NA	NA	NA	2	2	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|38aa|up_8|NZ_CP053092.1_1623216_1623330_-,NA|137aa|up_7|NZ_CP053092.1_1623379_1623790_-,NA|288aa|down_2|NZ_CP053092.1_1640994_1641858_+	NA|162aa|up_9|NZ_CP053092.1_1622299_1622785_-	cd07820, SRPBCC_3, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|38aa|up_8|NZ_CP053092.1_1623216_1623330_-	NA	NA|137aa|up_7|NZ_CP053092.1_1623379_1623790_-	NA	NA|248aa|up_6|NZ_CP053092.1_1623806_1624550_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|304aa|up_5|NZ_CP053092.1_1624546_1625458_-	TIGR00534, Putative_OxPP_cycle_protein_OpcA, glucose-6-phosphate dehydrogenase assembly protein OpcA	NA|515aa|up_4|NZ_CP053092.1_1625510_1627055_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|up_3|NZ_CP053092.1_1627051_1628173_-	PRK03343, PRK03343, transaldolase; Validated	NA|701aa|up_2|NZ_CP053092.1_1628189_1630292_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|1408aa|up_1|NZ_CP053092.1_1630730_1634954_-	pfam00934, PE, PE family	NA|309aa|up_0|NZ_CP053092.1_1635355_1636282_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|422aa|down_0|NZ_CP053092.1_1638695_1639961_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|329aa|down_1|NZ_CP053092.1_1639988_1640975_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|288aa|down_2|NZ_CP053092.1_1640994_1641858_+	NA	NA|311aa|down_3|NZ_CP053092.1_1641807_1642740_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|262aa|down_4|NZ_CP053092.1_1642851_1643637_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|314aa|down_5|NZ_CP053092.1_1643633_1644575_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|592aa|down_6|NZ_CP053092.1_1644730_1646506_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein	NA|269aa|down_7|NZ_CP053092.1_1646553_1647360_+	COG2345, COG2345, Predicted transcriptional regulator [Transcription]	NA|847aa|down_8|NZ_CP053092.1_1647356_1649897_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|398aa|down_9|NZ_CP053092.1_1649893_1651087_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	9	2069541-2069795	3	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCCNCCGTCGCCGCCNNTGCC	21	2	3	2069622-2069639|2069622-2069639|2069712-2069729	NZ_CP053092.1_403601-403584|NZ_CP053092.1_607193-607176|NZ_CP053092.1_3435928-3435911	NA	5	5	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|88aa|up_0|NZ_CP053092.1_2068900_2069164_-,NA	NA|165aa|up_9|NZ_CP053092.1_2055250_2055745_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|226aa|up_8|NZ_CP053092.1_2056092_2056770_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|942aa|up_7|NZ_CP053092.1_2057128_2059954_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|287aa|up_6|NZ_CP053092.1_2060180_2061041_-	PRK03204, PRK03204, haloalkane dehalogenase; Provisional	NA|289aa|up_5|NZ_CP053092.1_2061081_2061948_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|629aa|up_4|NZ_CP053092.1_2061952_2063839_-	TIGR00976, Hypothetical_protein_Rv1835c/MT1883/Mb1866c	NA|678aa|up_3|NZ_CP053092.1_2063854_2065888_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|742aa|up_2|NZ_CP053092.1_2066007_2068233_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|132aa|up_1|NZ_CP053092.1_2068508_2068904_-	COG1848, COG1848, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|88aa|up_0|NZ_CP053092.1_2068900_2069164_-	NA	NA|346aa|down_0|NZ_CP053092.1_2070932_2071970_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|456aa|down_1|NZ_CP053092.1_2071969_2073337_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|480aa|down_2|NZ_CP053092.1_2073510_2074950_-	PRK07807, PRK07807, GuaB1 family IMP dehydrogenase-related protein	NA|484aa|down_3|NZ_CP053092.1_2074982_2076434_-	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase	NA|317aa|down_4|NZ_CP053092.1_2076463_2077414_-	cd07326, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|139aa|down_5|NZ_CP053092.1_2077428_2077845_-	COG3682, COG3682, Predicted transcriptional regulator [Transcription]	NA|141aa|down_6|NZ_CP053092.1_2078122_2078545_+	COG2050, PaaI, HGG motif-containing thioesterase, possibly involved in aromatic compounds catabolism [Secondary metabolites biosynthesis,    transport, and catabolism]	NA|101aa|down_7|NZ_CP053092.1_2078593_2078896_+	pfam00547, Urease_gamma, Urease, gamma subunit	NA|105aa|down_8|NZ_CP053092.1_2078892_2079207_+	PRK13202, ureB, urease subunit beta; Reviewed	NA|578aa|down_9|NZ_CP053092.1_2079206_2080940_+	PRK13206, ureC, urease subunit alpha; Reviewed
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	10	2149987-2150206	6	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GTGCCAGCCGGAATCGTGATCGGCGGAACCGTCACCGACGGAATACTCA	49	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|136aa|up_3|NZ_CP053092.1_2141237_2141645_-,NA|127aa|down_5|NZ_CP053092.1_2157722_2158103_-	NA|741aa|up_9|NZ_CP053092.1_2135205_2137428_-	PRK15061, PRK15061, catalase/peroxidase	NA|148aa|up_8|NZ_CP053092.1_2137465_2137909_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|198aa|up_7|NZ_CP053092.1_2138022_2138616_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|202aa|up_6|NZ_CP053092.1_2138698_2139304_-	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|335aa|up_5|NZ_CP053092.1_2139403_2140408_-	cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|251aa|up_4|NZ_CP053092.1_2140507_2141260_+	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|136aa|up_3|NZ_CP053092.1_2141237_2141645_-	NA	NA|368aa|up_2|NZ_CP053092.1_2141779_2142883_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|399aa|up_1|NZ_CP053092.1_2142882_2144079_+	COG2224, AceA, Isocitrate lyase [Energy production and conversion]	NA|1412aa|up_0|NZ_CP053092.1_2144248_2148484_-	pfam00823, PPE, PPE family	NA|155aa|down_0|NZ_CP053092.1_2152233_2152698_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|288aa|down_1|NZ_CP053092.1_2152795_2153659_+	cd07987, LPLAT_MGAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like	NA|424aa|down_2|NZ_CP053092.1_2153696_2154968_-	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|372aa|down_3|NZ_CP053092.1_2155239_2156355_+	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms]	NA|447aa|down_4|NZ_CP053092.1_2156345_2157686_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|127aa|down_5|NZ_CP053092.1_2157722_2158103_-	NA	NA|621aa|down_6|NZ_CP053092.1_2158259_2160122_+	PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional	NA|160aa|down_7|NZ_CP053092.1_2160129_2160609_-	pfam09167, DUF1942, Domain of unknown function (DUF1942)	NA|258aa|down_8|NZ_CP053092.1_2160845_2161619_+	COG3361, COG3361, Uncharacterized conserved protein [Function unknown]	NA|256aa|down_9|NZ_CP053092.1_2161622_2162390_-	PRK05867, PRK05867, SDR family oxidoreductase
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	11	3105538-3107190	2,7,4	PILER-CR,CRISPRCasFinder,CRT	no	c2c9_V-U4,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-B,Type III-A,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	22,22,22	22	TypeIII-C,TypeIII-B,TypeIII-A,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_8|NZ_CP053092.1_3098817_3099072_-,NA|135aa|up_7|NZ_CP053092.1_3099219_3099624_+,NA|64aa|up_6|NZ_CP053092.1_3099620_3099812_+,NA|86aa|up_4|NZ_CP053092.1_3101398_3101656_+,NA|104aa|up_3|NZ_CP053092.1_3101760_3102072_+,NA|203aa|up_2|NZ_CP053092.1_3102491_3103100_+,NA	NA|92aa|up_9|NZ_CP053092.1_3098366_3098642_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|85aa|up_8|NZ_CP053092.1_3098817_3099072_-	NA	NA|135aa|up_7|NZ_CP053092.1_3099219_3099624_+	NA	NA|64aa|up_6|NZ_CP053092.1_3099620_3099812_+	NA	NA|385aa|up_5|NZ_CP053092.1_3100010_3101165_+	pfam00665, rve, Integrase core domain	NA|86aa|up_4|NZ_CP053092.1_3101398_3101656_+	NA	NA|104aa|up_3|NZ_CP053092.1_3101760_3102072_+	NA	NA|203aa|up_2|NZ_CP053092.1_3102491_3103100_+	NA	NA|470aa|up_1|NZ_CP053092.1_3103170_3104580_+	pfam00665, rve, Integrase core domain	NA|271aa|up_0|NZ_CP053092.1_3104576_3105389_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|down_0|NZ_CP053092.1_3107243_3108505_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_1|NZ_CP053092.1_3109255_3109597_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_2|NZ_CP053092.1_3109597_3110614_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_3|NZ_CP053092.1_3110626_3111775_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_4|NZ_CP053092.1_3111870_3112998_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_5|NZ_CP053092.1_3112994_3113903_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_6|NZ_CP053092.1_3113883_3114594_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_7|NZ_CP053092.1_3114603_3114978_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_8|NZ_CP053092.1_3114974_3117413_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_9|NZ_CP053092.1_3117409_3118132_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	12	3108586-3109207	3,8,5	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Type III-C,Type III-B,Type III-A,Type III-D	GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC,GTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGAC	36,36,36	0	0	NA	NA	II-B,III-A:II-B,III-A:II-B,III-A	8,8,8	8	TypeIII-C,TypeIII-B,TypeIII-A,TypeIII-D	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|85aa|up_9|NZ_CP053092.1_3098817_3099072_-,NA|135aa|up_8|NZ_CP053092.1_3099219_3099624_+,NA|64aa|up_7|NZ_CP053092.1_3099620_3099812_+,NA|86aa|up_5|NZ_CP053092.1_3101398_3101656_+,NA|104aa|up_4|NZ_CP053092.1_3101760_3102072_+,NA|203aa|up_3|NZ_CP053092.1_3102491_3103100_+,NA	NA|85aa|up_9|NZ_CP053092.1_3098817_3099072_-	NA	NA|135aa|up_8|NZ_CP053092.1_3099219_3099624_+	NA	NA|64aa|up_7|NZ_CP053092.1_3099620_3099812_+	NA	NA|385aa|up_6|NZ_CP053092.1_3100010_3101165_+	pfam00665, rve, Integrase core domain	NA|86aa|up_5|NZ_CP053092.1_3101398_3101656_+	NA	NA|104aa|up_4|NZ_CP053092.1_3101760_3102072_+	NA	NA|203aa|up_3|NZ_CP053092.1_3102491_3103100_+	NA	NA|470aa|up_2|NZ_CP053092.1_3103170_3104580_+	pfam00665, rve, Integrase core domain	NA|271aa|up_1|NZ_CP053092.1_3104576_3105389_+	COG3267, ExeA, Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]	NA|421aa|up_0|NZ_CP053092.1_3107243_3108505_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	cas2|114aa|down_0|NZ_CP053092.1_3109255_3109597_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|339aa|down_1|NZ_CP053092.1_3109597_3110614_-	TIGR00287, CRISPR-associated_endonuclease_Cas1, CRISPR-associated endonuclease Cas1	csm6|383aa|down_2|NZ_CP053092.1_3110626_3111775_-	cd09699, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	csm5gr7|376aa|down_3|NZ_CP053092.1_3111870_3112998_-	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csm4gr5|303aa|down_4|NZ_CP053092.1_3112994_3113903_-	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	csm3gr7|237aa|down_5|NZ_CP053092.1_3113883_3114594_-	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3	csm2gr11|125aa|down_6|NZ_CP053092.1_3114603_3114978_-	TIGR01870, CRISPR_type_III-associated_protein_Csm2, CRISPR type III-A/MTUBE-associated protein Csm2	cas10|813aa|down_7|NZ_CP053092.1_3114974_3117413_-	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10	cas6|241aa|down_8|NZ_CP053092.1_3117409_3118132_-	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	NA|182aa|down_9|NZ_CP053092.1_3118531_3119077_-	COG4293, COG4293, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	13	3730308-3731155	6	CRT	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	CCGCCGNNNCCNCCGTNNCCGCC	23	0	0	NA	NA	NA	11	11	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA,NA|96aa|down_4|NZ_CP053092.1_3745028_3745316_-,NA|88aa|down_9|NZ_CP053092.1_3758436_3758700_-	NA|147aa|up_9|NZ_CP053092.1_3711005_3711446_+	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators	NA|290aa|up_8|NZ_CP053092.1_3711479_3712349_-	TIGR00766, Uncharacterized_protein_Dda3937_02003, inner membrane protein YhjD	NA|337aa|up_7|NZ_CP053092.1_3712369_3713380_-	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|215aa|up_6|NZ_CP053092.1_3713652_3714297_+	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional	NA|410aa|up_5|NZ_CP053092.1_3714363_3715593_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|450aa|up_4|NZ_CP053092.1_3715875_3717225_+	PRK07812, PRK07812, O-acetylhomoserine aminocarboxypropyltransferase; Validated	NA|380aa|up_3|NZ_CP053092.1_3717236_3718376_+	PRK00175, metX, homoserine O-acetyltransferase; Provisional	NA|244aa|up_2|NZ_CP053092.1_3718372_3719104_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|2538aa|up_1|NZ_CP053092.1_3719112_3726726_-	pfam00823, PPE, PPE family	NA|339aa|up_0|NZ_CP053092.1_3726774_3727791_-	pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal	NA|86aa|down_0|NZ_CP053092.1_3732898_3733156_-	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|3158aa|down_1|NZ_CP053092.1_3733411_3742885_-	pfam00823, PPE, PPE family	NA|149aa|down_2|NZ_CP053092.1_3743510_3743957_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|247aa|down_3|NZ_CP053092.1_3743993_3744734_-	pfam01610, DDE_Tnp_ISL3, Transposase	NA|96aa|down_4|NZ_CP053092.1_3745028_3745316_-	NA	NA|3717aa|down_5|NZ_CP053092.1_3745652_3756803_-	pfam00823, PPE, PPE family	NA|265aa|down_6|NZ_CP053092.1_3757046_3757841_-	pfam08031, BBE, Berberine and berberine like	NA|124aa|down_7|NZ_CP053092.1_3757922_3758294_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|73aa|down_8|NZ_CP053092.1_3758191_3758410_-	pfam01565, FAD_binding_4, FAD binding domain	NA|88aa|down_9|NZ_CP053092.1_3758436_3758700_-	NA
GCF_013010385.1_ASM1301038v1	NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	14	4093184-4093272	9	CRISPRCasFinder	no		RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	Orphan	GCTCGGCGACGATGCGGGCCGGATGACGGCC	31	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,c2c9_V-U4,cas3,DinG,WYL,cas4,DEDDh,cas2,cas1,csm6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,cas6	NA|257aa|up_6|NZ_CP053092.1_4083770_4084541_-,NA|233aa|up_0|NZ_CP053092.1_4092288_4092987_-,NA|126aa|down_6|NZ_CP053092.1_4098507_4098885_+	NA|388aa|up_9|NZ_CP053092.1_4079441_4080605_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|351aa|up_8|NZ_CP053092.1_4080601_4081654_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|288aa|up_7|NZ_CP053092.1_4082152_4083016_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490	NA|257aa|up_6|NZ_CP053092.1_4083770_4084541_-	NA	NA|549aa|up_5|NZ_CP053092.1_4084537_4086184_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|288aa|up_4|NZ_CP053092.1_4086180_4087044_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|309aa|up_3|NZ_CP053092.1_4087036_4087963_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|542aa|up_2|NZ_CP053092.1_4087964_4089590_-	cd00995, PBP2_NikA_DppA_OppA_like, The substrate-binding domain of an ABC-type nickel/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|652aa|up_1|NZ_CP053092.1_4090297_4092253_+	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional	NA|233aa|up_0|NZ_CP053092.1_4092288_4092987_-	NA	NA|173aa|down_0|NZ_CP053092.1_4093332_4093851_+	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III	NA|328aa|down_1|NZ_CP053092.1_4093851_4094835_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|398aa|down_2|NZ_CP053092.1_4094827_4096021_-	pfam13365, Trypsin_2, Trypsin-like peptidase domain	NA|274aa|down_3|NZ_CP053092.1_4096026_4096848_-	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	NA|228aa|down_4|NZ_CP053092.1_4096979_4097663_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|246aa|down_5|NZ_CP053092.1_4097662_4098400_-	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]	NA|126aa|down_6|NZ_CP053092.1_4098507_4098885_+	NA	NA|225aa|down_7|NZ_CP053092.1_4098983_4099658_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|265aa|down_8|NZ_CP053092.1_4099763_4100558_-	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|152aa|down_9|NZ_CP053092.1_4100564_4101020_-	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
