The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	4394156	2928742	2967014	4394156	integrase,head,capsid,protease,terminase,tRNA	Mycobacterium_phage(30.0%)	47	2957543:2957570	2967167:2967194
WP_003413486.1|2928742_2930821_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.9	2.5e-104
WP_003413487.1|2930929_2931157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009938541.1|2931153_2932539_-	PE family protein	NA	NA	NA	NA	NA
WP_003413569.1|2932883_2933384_+	DUF1990 family protein	NA	NA	NA	NA	NA
WP_003413574.1|2933400_2933841_-	DoxX family membrane protein	NA	NA	NA	NA	NA
WP_003901437.1|2933987_2934665_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003413583.1|2934649_2935003_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_003413586.1|2935015_2935441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003413588.1|2935437_2936112_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003413589.1|2936189_2937011_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003413592.1|2937146_2938040_+	universal stress protein TB31.7	NA	NA	NA	NA	NA
WP_003413594.1|2938042_2938861_-	universal stress protein	NA	NA	NA	NA	NA
WP_003899401.1|2938875_2940057_-|protease	site-2 protease family protein	protease	NA	NA	NA	NA
WP_003413598.1|2940115_2940547_-	hypoxic response protein Hrp1	NA	A0A2I6B2H4	Macacine_betaherpesvirus	100.0	1.9e-75
WP_003899402.1|2941060_2942302_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003899403.1|2942611_2942974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413610.1|2943320_2944445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003413614.1|2944446_2944986_+	archease	NA	NA	NA	NA	NA
WP_003413616.1|2945125_2946424_+	RtcB family protein	NA	A2RQD0	Archaeal_BJ1_virus	43.3	3.8e-90
WP_003413619.1|2946462_2946744_-	DUF1876 domain-containing protein	NA	NA	NA	NA	NA
WP_003413625.1|2946888_2947374_-	non-heme di-iron catalase	NA	NA	NA	NA	NA
WP_003908019.1|2947400_2947655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009938544.1|2947658_2949995_-	PE family protein	NA	NA	NA	NA	NA
WP_003899405.1|2950023_2950266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899406.1|2950266_2950944_+	membrane protein	NA	NA	NA	NA	NA
WP_003413654.1|2951139_2951796_+	DedA family protein	NA	NA	NA	NA	NA
WP_003413657.1|2951958_2952405_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_003413663.1|2952579_2952912_-	YnfA family protein	NA	NA	NA	NA	NA
WP_003413665.1|2953031_2953391_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413675.1|2953492_2953951_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_003899407.1|2954086_2954467_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003413686.1|2954463_2955960_+	ACR3 family arsenite efflux transporter	NA	A0A2H4PQT9	Staphylococcus_phage	39.7	5.1e-14
WP_003912823.1|2956194_2956386_+	antitoxin MazE family protein	NA	NA	NA	NA	NA
2957543:2957570	attL	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
WP_003899409.1|2957676_2958108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003900538.1|2958104_2959103_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2D1G8E2	Mycobacterium_phage	47.8	7.4e-62
WP_003900539.1|2959116_2959581_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003908028.1|2959568_2959820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003899411.1|2959990_2961430_-|capsid	phage major capsid protein	capsid	A0A1B3AYS4	Gordonia_phage	40.6	1.4e-66
WP_003899412.1|2961437_2961971_-|head,protease	HK97 family phage prohead protease	head,protease	A0A2H4JB68	uncultured_Caudovirales_phage	32.9	3.1e-06
WP_003899413.1|2962123_2962750_-|terminase	phage terminase small subunit P27 family	terminase	V9H0V4	Actinophage	47.2	1.6e-17
WP_003899414.1|2962781_2963105_-	type II toxin-antitoxin system toxin	NA	NA	NA	NA	NA
WP_003899415.1|2963184_2963430_-	type II toxin-antitoxin system antitoxin	NA	NA	NA	NA	NA
WP_003899416.1|2963426_2964854_-	DUF3631 domain-containing protein	NA	NA	NA	NA	NA
WP_003899417.1|2964855_2965248_-	DUF2742 domain-containing protein	NA	NA	NA	NA	NA
WP_014585547.1|2965244_2965505_-	helix-turn-helix domain-containing protein	NA	A0A2P1CHK7	Mycobacterium_phage	63.1	1.9e-14
WP_003900543.1|2965521_2965884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003899420.1|2965886_2967014_-|integrase	site-specific integrase	integrase	A0A1X9SFC1	Mycobacterium_phage	40.4	1.5e-66
2967167:2967194	attR	ACTGGTTCAATCCCAGTATCGCGCACCA	NA	NA	NA	NA
>prophage 2
NZ_CP053092	Mycobacterium tuberculosis strain 4860 chromosome, complete genome	4394156	3694985	3743957	4394156	protease,tRNA,transposase	Burkholderia_virus(40.0%)	27	NA	NA
WP_087902221.1|3694985_3696247_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_003913037.1|3696379_3697444_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_003417299.1|3698088_3699234_+	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_003913449.1|3699328_3699766_-	hypothetical protein	NA	NA	NA	NA	NA
WP_087902221.1|3699909_3701171_-|transposase	IS3-like element IS987 family transposase	transposase	Q8W6R2	Burkholderia_virus	59.1	9.6e-83
WP_009937401.1|3701497_3701659_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_003902445.1|3701680_3703210_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_003417413.1|3703142_3704081_-	sigma-70 family RNA polymerase sigma factor SigJ	NA	NA	NA	NA	NA
WP_003902446.1|3704089_3705457_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	25.8	9.0e-18
WP_003417415.1|3705525_3706743_+	D-alanyl-D-alanine carboxypeptidase DacB1	NA	A0A1P8VVG5	Erythrobacter_phage	27.3	8.0e-10
WP_003417416.1|3706838_3708347_+	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_003417418.1|3708343_3709495_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003417421.1|3709685_3710531_-|protease	PDZ-interacting protease regulator Ppr1	protease	NA	NA	NA	NA
WP_003900026.1|3711005_3711446_+	heavy metal-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003417435.1|3711479_3712349_-	inner membrane protein YhjD	NA	NA	NA	NA	NA
WP_003417440.1|3712369_3713380_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003905041.1|3713652_3714297_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003417452.1|3714363_3715593_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_003900028.1|3715875_3717225_+	bifunctional o-acetylhomoserine/o-acetylserine sulfhydrylase	NA	A0A0B5JD48	Pandoravirus	26.5	2.5e-12
WP_003417458.1|3717236_3718376_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003417461.1|3718372_3719104_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_078439967.1|3719112_3726726_-	PPE family protein	NA	NA	NA	NA	NA
WP_009938644.1|3726774_3727791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014585564.1|3727948_3732475_-	PE family protein	NA	NA	NA	NA	NA
WP_003417619.1|3732898_3733156_-	DUF3017 domain-containing protein	NA	NA	NA	NA	NA
WP_009938649.1|3733411_3742885_-	PPE family protein	NA	NA	NA	NA	NA
WP_049961743.1|3743510_3743957_+|transposase	transposase	transposase	NA	NA	NA	NA
