assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	1	430073-430174	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|70aa|up_8|NZ_CP053075.1_421632_421842_-,NA|128aa|up_6|NZ_CP053075.1_422666_423050_-,NA|33aa|up_0|NZ_CP053075.1_429297_429396_+,NA|221aa|down_1|NZ_CP053075.1_431264_431927_-,NA|179aa|down_7|NZ_CP053075.1_438017_438554_-	NA|84aa|up_9|NZ_CP053075.1_421342_421594_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|70aa|up_8|NZ_CP053075.1_421632_421842_-	NA	NA|194aa|up_7|NZ_CP053075.1_422019_422601_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_6|NZ_CP053075.1_422666_423050_-	NA	NA|209aa|up_5|NZ_CP053075.1_423319_423946_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_4|NZ_CP053075.1_424389_425913_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP053075.1_425928_426498_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP053075.1_426989_427745_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP053075.1_427824_429213_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_0|NZ_CP053075.1_429297_429396_+	NA	NA|319aa|down_0|NZ_CP053075.1_430190_431147_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP053075.1_431264_431927_-	NA	NA|136aa|down_2|NZ_CP053075.1_432069_432477_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP053075.1_432988_433567_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP053075.1_433566_434835_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP053075.1_434872_436339_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP053075.1_436363_437905_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP053075.1_438017_438554_-	NA	NA|235aa|down_8|NZ_CP053075.1_438945_439650_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP053075.1_440048_440321_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2	777841-777923	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|69aa|up_9|NZ_CP053075.1_764454_764661_+,NA|34aa|down_1|NZ_CP053075.1_779578_779680_+,NA|52aa|down_8|NZ_CP053075.1_787528_787684_+	NA|69aa|up_9|NZ_CP053075.1_764454_764661_+	NA	NA|237aa|up_8|NZ_CP053075.1_764748_765459_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP053075.1_765442_766447_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP053075.1_766920_768861_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP053075.1_769130_771014_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP053075.1_771025_772807_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP053075.1_773028_774006_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP053075.1_773998_775513_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP053075.1_775752_776811_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP053075.1_777149_777692_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP053075.1_778570_779488_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP053075.1_779578_779680_+	NA	NA|502aa|down_2|NZ_CP053075.1_779757_781263_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP053075.1_781605_782106_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP053075.1_782125_782992_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP053075.1_783792_784191_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP053075.1_784153_786259_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP053075.1_786376_787348_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP053075.1_787528_787684_+	NA	NA|324aa|down_9|NZ_CP053075.1_787722_788694_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	3	818790-818868	3	CRISPRCasFinder	no	cas3	cas3,DinG,DEDDh,csa3,RT,WYL	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	818814-818844|818814-818844|818814-818844	NZ_CP053075.1_273681-273651|NZ_CP053075.1_273626-273596|NZ_CP053075.1_1256818-1256788	NA	1	1	Unclear	cas3,DinG,DEDDh,csa3,RT,WYL	NA|35aa|up_7|NZ_CP053075.1_809666_809771_+,NA|36aa|up_5|NZ_CP053075.1_811203_811311_+,NA	NA|191aa|up_9|NZ_CP053075.1_806107_806680_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP053075.1_807093_809625_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP053075.1_809666_809771_+	NA	NA|370aa|up_6|NZ_CP053075.1_809939_811050_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP053075.1_811203_811311_+	NA	NA|280aa|up_4|NZ_CP053075.1_811458_812298_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP053075.1_812471_813122_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP053075.1_813118_813355_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP053075.1_813623_815609_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP053075.1_815616_818463_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP053075.1_819126_820059_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP053075.1_820064_820904_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP053075.1_820911_821397_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP053075.1_821404_822844_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP053075.1_822910_823846_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP053075.1_824731_825643_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP053075.1_825639_826635_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP053075.1_826745_827690_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP053075.1_828253_828841_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|210aa|down_9|NZ_CP053075.1_830687_831317_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	4	824245-824514	1	CRT	no	cas3	cas3,DinG,DEDDh,csa3,RT,WYL	Unclear	TTCTCTGTGTTGGGGCCCACACCCCAACTNGCATTG	36	4	42	824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824281-824302|824339-824361|824339-824361|824339-824361|824339-824361|824339-824361|824339-824361|824339-824361|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824398-824419|824456-824478|824456-824478|824456-824478|824456-824478|824456-824478|824456-824478|824456-824478	NZ_CP053075.1_776882-776903|NZ_CP053075.1_867833-867854|NZ_CP053075.1_1276658-1276679|NZ_CP053075.1_1561087-1561108|NZ_CP053075.1_2028829-2028850|NZ_CP053075.1_150461-150440|NZ_CP053075.1_150519-150498|NZ_CP053075.1_273597-273576|NZ_CP053075.1_273707-273686|NZ_CP053075.1_654052-654031|NZ_CP053075.1_1291213-1291192|NZ_CP053075.1_994836-994857|NZ_CP053075.1_1256730-1256709|NZ_CP053075.1_1256963-1256942|NZ_CP053075.1_777854-777832|NZ_CP053075.1_778132-778110|NZ_CP053075.1_1560970-1560992|NZ_CP053075.1_2028887-2028909|NZ_CP053075.1_2390474-2390496|NZ_CP053075.1_1472672-1472650|NZ_CP053075.1_2133769-2133791|NZ_CP053075.1_776882-776903|NZ_CP053075.1_867833-867854|NZ_CP053075.1_1276658-1276679|NZ_CP053075.1_1561087-1561108|NZ_CP053075.1_2028829-2028850|NZ_CP053075.1_150461-150440|NZ_CP053075.1_150519-150498|NZ_CP053075.1_273597-273576|NZ_CP053075.1_273707-273686|NZ_CP053075.1_654052-654031|NZ_CP053075.1_1291213-1291192|NZ_CP053075.1_994836-994857|NZ_CP053075.1_1256730-1256709|NZ_CP053075.1_1256963-1256942|NZ_CP053075.1_777854-777832|NZ_CP053075.1_778132-778110|NZ_CP053075.1_1560970-1560992|NZ_CP053075.1_2028887-2028909|NZ_CP053075.1_2390474-2390496|NZ_CP053075.1_1472672-1472650|NZ_CP053075.1_2133769-2133791	NA	4	4	Unclear	cas3,DinG,DEDDh,csa3,RT,WYL	NA,NA	NA|280aa|up_9|NZ_CP053075.1_811458_812298_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP053075.1_812471_813122_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP053075.1_813118_813355_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP053075.1_813623_815609_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP053075.1_815616_818463_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP053075.1_819126_820059_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP053075.1_820064_820904_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP053075.1_820911_821397_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP053075.1_821404_822844_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP053075.1_822910_823846_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP053075.1_824731_825643_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP053075.1_825639_826635_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP053075.1_826745_827690_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP053075.1_828253_828841_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|210aa|down_4|NZ_CP053075.1_830687_831317_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_5|NZ_CP053075.1_832129_833143_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_6|NZ_CP053075.1_833195_834206_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_7|NZ_CP053075.1_834344_835535_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_8|NZ_CP053075.1_835656_836418_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_9|NZ_CP053075.1_836420_837938_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	5	867760-867841	4	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	867784-867817	NZ_CP053075.1_1560979-1561012	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA,NA	NA|194aa|up_9|NZ_CP053075.1_860862_861444_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP053075.1_861516_862134_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP053075.1_862288_862783_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP053075.1_863181_863604_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP053075.1_863751_864468_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP053075.1_864550_865090_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP053075.1_865240_865561_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP053075.1_865704_866061_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP053075.1_866218_866599_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP053075.1_866777_867656_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP053075.1_868183_868570_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP053075.1_868562_868859_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP053075.1_869108_870134_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP053075.1_870126_870822_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP053075.1_870839_871661_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP053075.1_871803_873024_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|463aa|down_6|NZ_CP053075.1_873037_874426_-	pfam02037, SAP, SAP domain	NA|191aa|down_7|NZ_CP053075.1_874452_875025_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|74aa|down_8|NZ_CP053075.1_875196_875418_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|91aa|down_9|NZ_CP053075.1_875418_875691_+	pfam13545, HTH_Crp_2, Crp-like helix-turn-helix domain
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	6	1291205-1291289	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	1	1291231-1291263	NZ_CP053075.1_1561011-1560979	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA,NA	NA|190aa|up_9|NZ_CP053075.1_1281834_1282404_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP053075.1_1282393_1282978_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP053075.1_1282978_1283332_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP053075.1_1283334_1284051_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP053075.1_1284090_1284777_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP053075.1_1284868_1285330_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|734aa|up_3|NZ_CP053075.1_1285334_1287536_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP053075.1_1287592_1288567_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP053075.1_1288611_1288863_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP053075.1_1289208_1291032_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP053075.1_1291597_1292722_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP053075.1_1292822_1293800_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP053075.1_1293831_1294458_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP053075.1_1294526_1296359_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP053075.1_1296494_1297634_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP053075.1_1297637_1298576_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP053075.1_1298577_1299330_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP053075.1_1299336_1300683_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP053075.1_1300975_1301152_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP053075.1_1301395_1302079_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	7	2280984-2281064	6	CRISPRCasFinder	no	csa3	cas3,DinG,DEDDh,csa3,RT,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|77aa|up_5|NZ_CP053075.1_2275858_2276089_-,NA|364aa|up_0|NZ_CP053075.1_2279875_2280967_+,NA|35aa|down_0|NZ_CP053075.1_2281400_2281505_-,NA|53aa|down_1|NZ_CP053075.1_2282184_2282343_+	NA|237aa|up_9|NZ_CP053075.1_2271469_2272180_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP053075.1_2272300_2272744_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP053075.1_2272943_2273357_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP053075.1_2273813_2275187_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP053075.1_2275858_2276089_-	NA	NA|313aa|up_4|NZ_CP053075.1_2276119_2277058_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP053075.1_2277493_2278159_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP053075.1_2278310_2278631_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP053075.1_2278632_2279610_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP053075.1_2279875_2280967_+	NA	NA|35aa|down_0|NZ_CP053075.1_2281400_2281505_-	NA	NA|53aa|down_1|NZ_CP053075.1_2282184_2282343_+	NA	NA|286aa|down_2|NZ_CP053075.1_2283000_2283858_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_3|NZ_CP053075.1_2283925_2284708_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_4|NZ_CP053075.1_2284939_2286745_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_5|NZ_CP053075.1_2287425_2288964_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_6|NZ_CP053075.1_2288998_2291131_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_7|NZ_CP053075.1_2291142_2291577_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_8|NZ_CP053075.1_2291576_2292683_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|2482aa|down_9|NZ_CP053075.1_2293001_2300447_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	8	2293306-2293391	7	CRISPRCasFinder	no	csa3	cas3,DinG,DEDDh,csa3,RT,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|364aa|up_9|NZ_CP053075.1_2279875_2280967_+,NA|35aa|up_8|NZ_CP053075.1_2281400_2281505_-,NA|53aa|up_7|NZ_CP053075.1_2282184_2282343_+,NA	NA|364aa|up_9|NZ_CP053075.1_2279875_2280967_+	NA	NA|35aa|up_8|NZ_CP053075.1_2281400_2281505_-	NA	NA|53aa|up_7|NZ_CP053075.1_2282184_2282343_+	NA	NA|286aa|up_6|NZ_CP053075.1_2283000_2283858_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP053075.1_2283925_2284708_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP053075.1_2284939_2286745_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP053075.1_2287425_2288964_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP053075.1_2288998_2291131_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP053075.1_2291142_2291577_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP053075.1_2291576_2292683_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP053075.1_2300724_2302080_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP053075.1_2302106_2303039_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP053075.1_2303040_2303850_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP053075.1_2304038_2304947_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP053075.1_2311141_2312206_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP053075.1_2312353_2313796_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP053075.1_2314118_2314592_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP053075.1_2314690_2316034_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP053075.1_2316210_2316894_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP053075.1_2316912_2318100_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_013004085.1_ASM1300408v1	NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	9	2401300-2401380	8	CRISPRCasFinder	no		cas3,DinG,DEDDh,csa3,RT,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	13	2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355|2401325-2401355	NZ_CP053075.1_831532-831562|NZ_CP053075.1_831588-831618|NZ_CP053075.1_36457-36487|NZ_CP053075.1_831644-831674|NZ_CP053075.1_1276595-1276625|NZ_CP053075.1_1561023-1561053|NZ_CP053075.1_1767123-1767153|NZ_CP053075.1_2027481-2027511|NZ_CP053075.1_2390527-2390557|NZ_CP053075.1_2566486-2566516|NZ_CP053075.1_391366-391336|NZ_CP053075.1_654116-654086|NZ_CP053075.1_1472619-1472589	NA	1	1	Orphan	cas3,DinG,DEDDh,csa3,RT,WYL	NA|55aa|up_8|NZ_CP053075.1_2391836_2392001_+,NA|106aa|up_7|NZ_CP053075.1_2392245_2392563_+,NA|84aa|up_5|NZ_CP053075.1_2397681_2397933_+,NA|62aa|up_0|NZ_CP053075.1_2401072_2401258_+,NA	NA|303aa|up_9|NZ_CP053075.1_2390795_2391704_-	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|55aa|up_8|NZ_CP053075.1_2391836_2392001_+	NA	NA|106aa|up_7|NZ_CP053075.1_2392245_2392563_+	NA	NA|422aa|up_6|NZ_CP053075.1_2396027_2397293_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP053075.1_2397681_2397933_+	NA	NA|255aa|up_4|NZ_CP053075.1_2397924_2398689_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP053075.1_2398850_2399291_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP053075.1_2399283_2400495_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP053075.1_2400596_2400947_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|62aa|up_0|NZ_CP053075.1_2401072_2401258_+	NA	NA|341aa|down_0|NZ_CP053075.1_2401523_2402546_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP053075.1_2402565_2403165_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP053075.1_2403171_2403405_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP053075.1_2403410_2403857_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP053075.1_2403870_2404356_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP053075.1_2404352_2405612_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP053075.1_2405674_2406169_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP053075.1_2406170_2406677_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP053075.1_2406707_2407712_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP053075.1_2407881_2408487_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
