The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	329512	370257	2883539	holin,capsid,head,terminase,tail,portal,protease,integrase	Staphylococcus_phage(94.12%)	69	329402:329419	370754:370771
329402:329419	attL	ATCATACAAGGATGGGAT	NA	NA	NA	NA
WP_000264187.1|329512_330718_-|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	100.0	5.0e-222
WP_000191466.1|330827_331442_+	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	100.0	6.7e-106
WP_001795334.1|331438_331585_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000705240.1|331621_331804_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_033857101.1|331873_332644_-	helix-turn-helix domain-containing protein	NA	A0A1X9H0P5	Staphylococcus_phage	100.0	4.7e-141
WP_000338187.1|332803_333025_+	DUF739 family protein	NA	A0A1X9H090	Staphylococcus_phage	100.0	7.6e-36
WP_031900836.1|333048_333495_+	hypothetical protein	NA	A0A1X9H091	Staphylococcus_phage	100.0	1.9e-78
WP_033857102.1|333511_334261_+	phage antirepressor KilAC domain-containing protein	NA	A0A1X9H088	Staphylococcus_phage	100.0	2.0e-136
WP_000435341.1|334273_334534_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_163998812.1|334553_334691_+	hypothetical protein	NA	A0ZS11	Staphylococcus_virus	97.8	2.9e-17
WP_001148859.1|334767_334962_+	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_000768245.1|334956_335313_-	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_000389906.1|335362_335554_+	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	100.0	2.8e-26
WP_031900921.1|335555_335783_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	92.0	6.0e-36
WP_001148541.1|335842_336619_+	Rha family transcriptional regulator	NA	A0A2D1G5J2	Staphylococcus_phage	87.2	2.2e-122
WP_031900920.1|336632_336848_+	hypothetical protein	NA	Q4ZCA9	Staphylococcus_virus	57.1	5.7e-12
WP_000939500.1|336900_337041_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	95.7	9.4e-16
WP_001814660.1|337055_337688_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	92.4	7.6e-105
WP_031900928.1|338059_338278_+	hypothetical protein	NA	A0A068A2A3	Staphylococcus_phage	98.6	5.6e-31
WP_001124198.1|338307_338571_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_031900930.1|338582_338744_+	DUF1270 family protein	NA	A7TWM3	Staphylococcus_phage	98.1	2.5e-20
WP_000291075.1|338837_339098_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_031900924.1|339105_339342_+	hypothetical protein	NA	A0A1X9H097	Staphylococcus_phage	100.0	7.9e-39
WP_000002513.1|339334_339814_+	siphovirus Gp157 family protein	NA	D2JGK0	Staphylococcus_phage	100.0	5.3e-82
WP_145398813.1|339813_340452_+	ERF family protein	NA	A0A1X9H0T0	Staphylococcus_phage	100.0	1.7e-115
WP_145398816.1|340451_340877_+	single-stranded DNA-binding protein	NA	A0A1X9H0B0	Staphylococcus_phage	100.0	3.1e-62
WP_042743981.1|340890_341565_+	phi PV83 orf 19-like protein	NA	A0A1X9H0A9	Staphylococcus_phage	100.0	4.7e-129
WP_016028252.1|341674_342334_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_015967235.1|342379_343150_+	conserved phage C-terminal domain-containing protein	NA	A0A1X9H0A8	Staphylococcus_phage	100.0	3.8e-122
WP_000803028.1|343159_343933_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	100.0	4.6e-144
WP_000256589.1|343926_344085_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_001123688.1|344097_344319_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_001187267.1|344735_344921_+	DUF3113 family protein	NA	A0A1X9H0T9	Staphylococcus_phage	100.0	5.4e-27
WP_000117793.1|344921_345281_+	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	93.3	3.6e-59
WP_114579870.1|345281_345530_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	97.6	8.8e-41
WP_001065055.1|345544_345793_+	DUF1024 family protein	NA	A7TWB0	Staphylococcus_phage	96.3	2.5e-35
WP_000185661.1|345785_346319_+	dUTP pyrophosphatase	NA	A0A059T5A7	Staphylococcus_phage	98.3	3.0e-94
WP_001282074.1|346355_346601_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195771.1|346597_346804_+	DUF1381 domain-containing protein	NA	Q6R823	Staphylococcus_virus	91.2	4.2e-20
WP_000592223.1|346800_347184_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.4	9.7e-63
WP_147091838.1|347183_347333_+	transcriptional regulator	NA	A0A1W6JPZ2	Staphylococcus_phage	93.9	4.1e-17
WP_000265041.1|347332_347533_+	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_000282753.1|347555_348017_+	hypothetical protein	NA	R9QT84	Staphylococcus_phage	100.0	8.7e-74
WP_000406188.1|348131_348584_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	99.3	3.9e-79
WP_000817289.1|348599_348944_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000919030.1|349071_349542_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	93.5	2.6e-78
WP_033857156.1|349541_351236_+|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	89.9	3.0e-297
WP_031916527.1|351249_351453_+	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	78.5	3.9e-18
WP_031916528.1|351455_352730_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	87.8	3.6e-210
WP_031916529.1|352704_353289_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	96.4	3.5e-104
WP_000849953.1|353376_354612_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	79.5	1.0e-169
WP_001240639.1|354648_354807_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	88.5	3.9e-18
WP_031916531.1|354815_355148_+|head,tail	phage head-tail connector protein	head,tail	A7TWQ4	Staphylococcus_phage	80.9	6.1e-45
WP_031916532.1|355137_355470_+|head,tail	head-tail adaptor protein	head,tail	D2JLF1	Staphylococcus_phage	85.5	8.7e-52
WP_000501001.1|355469_355847_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	86.4	6.2e-54
WP_031916533.1|355843_356233_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	77.0	1.3e-51
WP_031916534.1|356225_357179_+	Ig-like domain-containing protein	NA	A7TWD0	Staphylococcus_phage	91.8	8.7e-161
WP_031916535.1|357243_357690_+	hypothetical protein	NA	O80053	Staphylococcus_phage	93.2	4.3e-70
WP_000571956.1|357749_357872_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_031916536.1|357927_362577_+|tail	phage tail tape measure protein	tail	R9QSQ8	Staphylococcus_phage	97.0	0.0e+00
WP_031916537.1|362576_364067_+|tail	phage tail family protein	tail	R9QST9	Staphylococcus_phage	99.8	6.9e-298
WP_031910186.1|364082_367868_+	phage minor structural protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
WP_001153681.1|367857_368010_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|368056_368344_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|368401_368698_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|368847_369024_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|369076_369184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|369235_369490_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|369501_370257_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
370754:370771	attR	ATCATACAAGGATGGGAT	NA	NA	NA	NA
>prophage 2
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	755959	763781	2883539		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|755959_757015_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|757014_757701_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|757675_758149_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|758491_758932_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|759211_759796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|759894_760608_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_170172331.1|760611_761031_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	3.7e-07
WP_000446724.1|761032_761701_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|762052_762646_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217796.1|762629_763781_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
>prophage 3
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	775752	790395	2883539		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|775752_776811_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197262.1|777149_777692_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|778570_779488_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031760357.1|779578_779680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|779757_781263_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930018.1|781605_782106_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	2.9e-51
WP_001068501.1|782125_782992_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|783792_784191_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_153906561.1|784153_786259_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000562498.1|786376_787348_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|787528_787684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|787722_788694_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|788680_789637_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|789633_790395_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 4
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	871803	935564	2883539	holin,capsid,head,terminase,tail,portal,coat,integrase,plate	Staphylococcus_phage(82.5%)	93	878846:878864	910502:910520
WP_000270271.1|871803_873024_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.3	1.1e-99
WP_025173845.1|873037_874426_-	SAP domain-containing protein	NA	NA	NA	NA	NA
WP_001661454.1|874452_875025_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000560872.1|875196_875418_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JFN1	uncultured_Caudovirales_phage	43.5	2.0e-07
WP_000124597.1|875418_875691_+	helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	84.4	7.7e-38
WP_000784891.1|875702_875858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231375.1|875842_876046_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	100.0	1.0e-31
WP_000695075.1|876047_876431_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	90.6	1.0e-56
WP_170172333.1|876431_876725_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	92.1	9.8e-39
WP_001002696.1|876812_877682_+	primase C-terminal domain-containing protein	NA	Q4ZE74	Staphylococcus_phage	95.2	1.1e-162
WP_000447476.1|877695_879405_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	95.8	0.0e+00
878846:878864	attL	AAGACGTGTATAAGAAAGC	NA	NA	NA	NA
WP_000356930.1|879734_880115_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	98.4	1.5e-68
WP_001047696.1|880111_880753_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.4	1.9e-111
WP_001190615.1|881288_881630_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|881641_882220_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448773.1|882237_882456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771367.1|882506_883034_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	1.6e-87
WP_170172419.1|883165_883378_+	helix-turn-helix domain-containing protein	NA	Q4ZE86	Staphylococcus_phage	90.0	3.0e-29
WP_163999027.1|883374_883941_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	6.2e-98
WP_163999029.1|884489_884879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_163999031.1|884880_886089_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076706559.1|886115_886508_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_170172334.1|886658_887174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000752917.1|887773_887968_+	CsbD family protein	NA	NA	NA	NA	NA
WP_001183854.1|888201_889053_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|889380_890142_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_000205567.1|890239_891547_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_078056502.1|891652_892903_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	4.1e-110
WP_001010508.1|892892_893357_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_001074405.1|893507_894905_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001145731.1|894972_896022_-|integrase	site-specific integrase	integrase	A0A0H4ISP4	Staphylococcus_phage	98.9	2.5e-201
WP_000337827.1|896135_896315_+	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_031785524.1|896294_897227_-	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	99.0	9.7e-173
WP_000661437.1|897258_897984_-	PH domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000775187.1|898011_898686_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_001055143.1|898702_899035_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000108122.1|899297_899492_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001002759.1|899491_900256_+	phage antirepressor Ant	NA	R4IFK0	Staphylococcus_phage	99.6	2.7e-141
WP_001148854.1|900272_900467_+	hypothetical protein	NA	Q4ZDS1	Staphylococcus_virus	90.5	4.6e-21
WP_017431790.1|900497_900641_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	89.1	3.1e-14
WP_012840514.1|900650_901253_-	hypothetical protein	NA	B7T096	Staphylococcus_virus	98.5	2.2e-101
WP_000933364.1|901695_901881_+	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	98.4	1.7e-25
WP_042742956.1|901882_902635_+	phage antirepressor KilAC domain-containing protein	NA	G4KNN1	Staphylococcus_phage	99.6	4.3e-139
WP_000405222.1|902675_902966_+	hypothetical protein	NA	A0A1Q1PVT7	Staphylococcus_phage	78.1	1.6e-38
WP_000224747.1|902977_903148_-	hypothetical protein	NA	A0A2H4J2N9	uncultured_Caudovirales_phage	89.7	2.8e-06
WP_000594790.1|903218_903440_+	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	100.0	1.5e-31
WP_031794900.1|903432_903594_+	DUF1270 family protein	NA	A0A059T7J6	Staphylococcus_phage	98.1	2.5e-20
WP_114579868.1|903687_903948_+	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	96.5	2.2e-42
WP_000802315.1|903955_904192_+	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	100.0	2.7e-39
WP_000002513.1|904184_904664_+	siphovirus Gp157 family protein	NA	D2JGK0	Staphylococcus_phage	100.0	5.3e-82
WP_001043061.1|904663_905302_+	ERF family protein	NA	D2JGK1	Staphylococcus_phage	100.0	2.2e-115
WP_031795050.1|905301_905730_+	single-stranded DNA-binding protein	NA	D2JGK2	Staphylococcus_phage	95.1	7.8e-61
WP_031795051.1|905743_906418_+	phi PV83 orf 19-like protein	NA	R4IH15	Staphylococcus_phage	97.8	9.9e-127
WP_016028252.1|906527_907187_-	hypothetical protein	NA	E0Y3Q0	Staphylococcus_virus	100.0	1.4e-120
WP_000190226.1|907232_908003_+	conserved phage C-terminal domain-containing protein	NA	A0A2H4PQI2	Staphylococcus_phage	100.0	2.4e-116
WP_000803028.1|908012_908786_+	ATP-binding protein	NA	A0A2H4PQI3	Staphylococcus_phage	100.0	4.6e-144
WP_000256597.1|908779_908938_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123681.1|908951_909173_+	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
WP_170172335.1|909183_909588_+	DUF1064 domain-containing protein	NA	A0A068A2B2	Staphylococcus_phage	98.5	2.8e-68
WP_031880123.1|909592_909778_+	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	95.1	6.0e-26
WP_114304737.1|909778_910150_+	hypothetical protein	NA	C5I648	Staphylococcus_phage	98.4	1.9e-55
WP_170172336.1|910150_910399_+	hypothetical protein	NA	A0A2I6PF06	Staphylococcus_phage	96.3	2.6e-40
WP_001065082.1|910413_910665_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	98.8	1.2e-37
910502:910520	attR	AAGACGTGTATAAGAAAGC	NA	NA	NA	NA
WP_170172337.1|910654_910897_+	hypothetical protein	NA	Q8SDV4	Staphylococcus_phage	98.8	7.8e-34
WP_114306616.1|910889_911411_+	dUTPase	NA	A0A2H4JA54	uncultured_Caudovirales_phage	78.6	7.0e-72
WP_001209219.1|911447_911621_+	hypothetical protein	NA	S4SVD5	Staphylococcus_phage	100.0	3.6e-25
WP_031904671.1|911637_911847_+	DUF1381 domain-containing protein	NA	S4SVE0	Staphylococcus_phage	100.0	2.5e-20
WP_000595257.1|911839_912013_+	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000286967.1|912013_912415_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	99.2	1.6e-68
WP_000594090.1|912792_913287_+|terminase	terminase small subunit	terminase	A0A059T7P8	Staphylococcus_phage	97.6	5.4e-74
WP_001037582.1|913279_914503_+|terminase	PBSX family phage terminase large subunit	terminase	A0A059T7K2	Staphylococcus_phage	99.0	2.1e-239
WP_025175280.1|914499_915924_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	98.9	4.5e-270
WP_000184140.1|915892_916843_+|capsid	minor capsid protein	capsid	M9NST7	Staphylococcus_phage	100.0	2.3e-177
WP_000440857.1|916846_917080_+	hypothetical protein	NA	M9NUJ2	Staphylococcus_phage	100.0	2.5e-37
WP_001019222.1|917183_917768_+	DUF4355 domain-containing protein	NA	M9NRJ1	Staphylococcus_phage	99.5	9.9e-75
WP_000235170.1|917784_918699_+|capsid	phage major capsid protein	capsid	A0A059T7K3	Staphylococcus_phage	99.3	1.3e-169
WP_000002930.1|918710_918854_+	hypothetical protein	NA	A0A059T673	Staphylococcus_phage	100.0	7.9e-18
WP_000177353.1|918859_919210_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	99.1	3.2e-60
WP_000483043.1|919221_919557_+|head	phage head closure protein	head	M9NUJ3	Staphylococcus_phage	98.2	1.3e-58
WP_001151327.1|919543_919957_+	HK97 gp10 family phage protein	NA	A0A0N9BAY5	Staphylococcus_phage	98.5	2.0e-74
WP_000270186.1|919969_920395_+	DUF3168 domain-containing protein	NA	Q4ZBQ9	Staphylococcus_phage	98.6	2.3e-73
WP_000057585.1|920395_920953_+	hypothetical protein	NA	A0A059T675	Staphylococcus_phage	100.0	4.1e-102
WP_000134335.1|921019_921532_+	hypothetical protein	NA	A0A059T5B1	Staphylococcus_phage	99.4	1.2e-92
WP_025175279.1|921576_921861_+	hypothetical protein	NA	A0A059T626	Staphylococcus_phage	93.6	4.9e-43
WP_000379436.1|921864_924750_+	hypothetical protein	NA	M9NRJ5	Staphylococcus_phage	92.6	0.0e+00
WP_000560186.1|924764_925706_+|tail	phage tail family protein	tail	A0A059T7K5	Staphylococcus_phage	98.1	4.5e-178
WP_001122007.1|925716_927603_+|tail	phage tail protein	tail	A0A059T677	Staphylococcus_phage	97.8	0.0e+00
WP_000323263.1|927615_929514_+	hypothetical protein	NA	Q4ZA90	Staphylococcus_virus	96.5	0.0e+00
WP_170172338.1|929513_931337_+|plate	phage baseplate upper protein	plate	Q4ZB25	Staphylococcus_virus	97.2	0.0e+00
WP_153906679.1|931336_931723_+	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	85.0	1.1e-45
WP_031766783.1|931715_931871_+	XkdX family protein	NA	M9QX31	Staphylococcus_phage	90.2	9.1e-20
WP_102947779.1|931955_932324_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	94.3	3.1e-26
WP_017431806.1|935126_935564_+|holin	phage holin	holin	Q4ZDC5	Staphylococcus_virus	99.3	2.4e-73
>prophage 5
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	1020291	1073808	2883539	tRNA,transposase,bacteriocin,protease	Streptococcus_phage(33.33%)	53	NA	NA
WP_170172340.1|1020291_1021281_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|1021574_1021970_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001557163.1|1022157_1023477_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001217728.1|1023843_1024563_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959282.1|1024683_1025670_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082725.1|1025717_1027526_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000896697.1|1027985_1028792_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214070.1|1028814_1029180_-	truncated hemoglobin	NA	NA	NA	NA	NA
WP_000224619.1|1029283_1029877_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242103.1|1030062_1030410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|1030426_1031062_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|1031078_1031888_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669923.1|1031884_1032739_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062407.1|1032759_1034145_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|1034154_1035999_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_000933195.1|1036276_1037047_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|1037243_1038329_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570687.1|1038670_1040239_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288675.1|1040383_1041142_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600387.1|1041335_1041845_+	2'-5' RNA ligase family protein	NA	NA	NA	NA	NA
WP_001154223.1|1041957_1043148_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258645.1|1043125_1044301_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340119.1|1044733_1046218_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1046198_1046459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049950.1|1046458_1048021_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_000928413.1|1048322_1049126_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001795272.1|1049344_1051669_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021865.1|1051685_1053044_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414165.1|1053182_1054694_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1055180_1055750_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1055959_1056178_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_114283590.1|1056258_1057245_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1057443_1057620_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033865.1|1057634_1058237_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_031763719.1|1059152_1059254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001797239.1|1059263_1059536_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_114283588.1|1059579_1061544_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668627.1|1061546_1061867_+	YxeA family protein	NA	NA	NA	NA	NA
WP_170172341.1|1061863_1062505_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.5	3.8e-19
WP_001795266.1|1062592_1062883_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792054.1|1063023_1063161_+	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|1063249_1063606_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|1064093_1065053_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|1065098_1065230_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000867357.1|1065293_1065509_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	49.1	1.5e-07
WP_000620949.1|1065673_1066225_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|1066276_1067215_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000190622.1|1067396_1068758_+	isochorismate synthase MenF	NA	NA	NA	NA	NA
WP_000526694.1|1068744_1070418_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150197.1|1070404_1071208_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184945.1|1071200_1072022_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284458.1|1072259_1072589_-	staphostatin B	NA	NA	NA	NA	NA
WP_001089094.1|1072626_1073808_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 6
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	1093733	1102206	2883539		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1093733_1094216_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010413.1|1094202_1095327_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1095330_1096035_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1096034_1096298_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666806.1|1096299_1096971_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032741.1|1096963_1099153_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.3e-140
WP_000483720.1|1099131_1100616_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000030811.1|1100608_1101637_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000238669.1|1101639_1102206_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	1232587	1241630	2883539	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005768.1|1232587_1233592_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|1233593_1234619_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|1234641_1235781_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|1235799_1236060_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|1236334_1238614_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_170172345.1|1238816_1241090_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	2.1e-64
WP_000364542.1|1241111_1241630_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 8
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	1862851	1929959	2883539	tRNA,protease	Staphylococcus_phage(95.35%)	61	NA	NA
WP_001266162.1|1862851_1863496_-|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_000434765.1|1863510_1864302_-	phosphotransferase family protein	NA	NA	NA	NA	NA
WP_000411084.1|1864851_1865700_-	D-amino-acid transaminase	NA	NA	NA	NA	NA
WP_000265417.1|1865703_1867113_-	Mn(2+)-dependent dipeptidase Sapep	NA	NA	NA	NA	NA
WP_001051856.1|1867670_1868093_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_001217125.1|1868109_1868805_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000004334.1|1868801_1870463_-	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_000285020.1|1870869_1872138_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
WP_114283511.1|1872254_1878815_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000836461.1|1879140_1879452_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_170172374.1|1879473_1881891_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_001025067.1|1882178_1883360_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_000526539.1|1883469_1884423_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1884419_1884983_+	class I SAM-dependent methyltransferase	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1885105_1885507_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1886078_1886906_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1886908_1887028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196362.1|1887139_1888141_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001008549.1|1888262_1888727_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001159037.1|1888739_1889921_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_000493887.1|1889931_1890564_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_000077358.1|1890570_1891614_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	5.3e-196
WP_001261668.1|1892094_1893597_-	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000221177.1|1894119_1894434_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_000989121.1|1894433_1895726_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_001032833.1|1895812_1896667_-	glucosaminidase domain-containing protein	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1896942_1897167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001153742.1|1897949_1898393_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1898379_1898823_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168903.1|1899118_1899754_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1900193_1900907_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091442.1|1901166_1901469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1901724_1902090_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623470.1|1902086_1902440_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_000453306.1|1904436_1905270_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000366163.1|1905481_1906390_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933820.1|1906511_1907708_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109906.1|1908079_1909672_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_012840522.1|1910049_1910796_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	5.4e-142
WP_000672013.1|1910800_1911274_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1911339_1911597_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778527.1|1911593_1912595_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	3.4e-184
WP_000348364.1|1912599_1914078_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_012840523.1|1914236_1914692_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_001795210.1|1914994_1915645_+	excalibur calcium-binding domain-containing protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_000070642.1|1915725_1916721_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_000669024.1|1916795_1917422_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000627540.1|1917462_1917804_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_170172375.1|1917904_1918477_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	91.4	8.6e-23
WP_001801861.1|1919831_1919927_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001792025.1|1920049_1920151_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000072627.1|1921226_1922456_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_000028669.1|1922448_1924005_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	1.6e-289
WP_001791797.1|1924168_1924303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|1924365_1925085_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_011447030.1|1925186_1925294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1925242_1925962_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038872.1|1926082_1926802_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001039454.1|1926859_1927582_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001039427.1|1927706_1928414_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001092780.1|1929377_1929959_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
>prophage 9
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	2038826	2138652	2883539	tRNA,holin,capsid,head,terminase,tail,portal,protease,integrase,plate	Staphylococcus_phage(73.85%)	108	2038162:2038186	2140938:2140962
2038162:2038186	attL	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
WP_162675320.1|2038826_2040254_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027917.1|2040266_2041724_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|2041725_2042028_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_170172380.1|2042394_2043933_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831700.1|2044021_2045221_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774556.1|2045233_2047237_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
WP_000992924.1|2047240_2049433_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272056.1|2049429_2050122_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|2050293_2050596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|2050704_2052000_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827746.1|2052859_2054026_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2054056_2054383_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2054674_2054848_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2054828_2055431_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040866.1|2055701_2056523_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284436.1|2056515_2057985_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000897635.1|2058168_2059245_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177828.1|2059264_2060059_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2060130_2060238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2060248_2061811_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275727.1|2062015_2063113_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
WP_000149686.1|2063481_2064042_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2064094_2065024_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001792184.1|2065216_2065390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021210.1|2065441_2066821_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181315.1|2066940_2067969_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2068238_2068640_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2069212_2069386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188043.1|2069836_2070877_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2070933_2071776_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2071772_2072330_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2072389_2072914_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2073034_2073598_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2073663_2074404_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763043.1|2074403_2075276_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_000645727.1|2075272_2075953_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991306.1|2075953_2076850_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000691584.1|2076846_2077227_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2077484_2077661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2077903_2078002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068542.1|2078201_2079488_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000671712.1|2079766_2080057_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001558588.1|2080067_2081501_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000766912.1|2082749_2083703_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_170172381.1|2084379_2085120_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000930251.1|2085464_2086919_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6WMR3	Staphylococcus_phage	95.6	2.3e-277
WP_000387655.1|2086929_2087232_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	94.0	6.5e-46
WP_000466781.1|2087770_2088070_-	DUF2951 family protein	NA	A0A2I6PER2	Staphylococcus_phage	99.0	4.5e-31
WP_000916020.1|2088115_2088280_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166602.1|2088272_2088662_-	DUF2977 domain-containing protein	NA	M9QYR4	Staphylococcus_phage	92.2	2.8e-57
WP_000067150.1|2088661_2090128_-|plate	phage baseplate upper protein	plate	Q4ZCZ8	Staphylococcus_virus	93.0	9.3e-255
WP_170172382.1|2090127_2092038_-	hypothetical protein	NA	R4WAL5	Staphylococcus_phage	99.2	0.0e+00
WP_000179860.1|2092053_2092344_-	hypothetical protein	NA	A0A2I6PF46	Staphylococcus_phage	100.0	2.1e-49
WP_000384455.1|2092343_2093927_-|tail	phage tail protein	tail	M9QX27	Staphylococcus_phage	99.4	3.5e-308
WP_001190533.1|2093935_2094760_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_170172383.1|2094759_2100936_-|tail	phage tail tape measure protein	tail	A0A2I6PEL0	Staphylococcus_phage	96.6	0.0e+00
WP_012840525.1|2100949_2101108_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	86.5	1.9e-17
WP_000589169.1|2101149_2101500_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	98.3	6.8e-55
WP_000169126.1|2101557_2102013_-	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	96.7	1.2e-75
WP_000807543.1|2102104_2102746_-|tail	tail protein	tail	A0A2I6PE59	Staphylococcus_phage	97.2	4.7e-118
WP_001023810.1|2102780_2103176_-	DUF3168 domain-containing protein	NA	A0A0K1LKC0	Staphylococcus_phage	98.5	7.4e-66
WP_000110016.1|2103176_2103578_-	hypothetical protein	NA	A0A0K1LL98	Staphylococcus_phage	98.5	1.2e-66
WP_000395500.1|2103574_2103907_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	98.2	7.6e-56
WP_000050973.1|2103918_2104197_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_012840526.1|2104265_2105429_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	99.0	5.2e-216
WP_000061859.1|2105440_2106214_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	99.6	1.2e-136
WP_001100667.1|2106197_2107436_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	1.5e-234
WP_000153537.1|2107440_2109132_-|terminase	terminase large subunit	terminase	A0A2I6PDP8	Staphylococcus_phage	97.7	0.0e+00
WP_000778931.1|2109121_2109427_-|terminase	P27 family phage terminase small subunit	terminase	A0A2I6PEQ6	Staphylococcus_phage	99.0	1.4e-48
WP_000160696.1|2109553_2109868_-	HNH endonuclease	NA	M9QQL5	Staphylococcus_phage	99.0	5.5e-56
WP_000590121.1|2110022_2110439_-	hypothetical protein	NA	A0A1X9H0U8	Staphylococcus_phage	99.3	1.1e-75
WP_000264723.1|2110466_2110667_-	DUF1514 family protein	NA	R9QT57	Staphylococcus_phage	89.4	3.2e-25
WP_000141181.1|2110666_2110909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170172384.1|2110905_2111112_-	DUF1381 domain-containing protein	NA	A0A0H4IPW6	Staphylococcus_phage	94.1	2.4e-28
WP_000185696.1|2111148_2111685_-	dUTP diphosphatase	NA	M1SNY5	Staphylococcus_phage	98.3	1.4e-94
WP_000066807.1|2111677_2111920_-	hypothetical protein	NA	Q8SDV4	Staphylococcus_phage	98.8	6.0e-34
WP_001065082.1|2111909_2112161_-	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	98.8	1.2e-37
WP_001126847.1|2112175_2112424_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	91.5	1.6e-37
WP_000029396.1|2112424_2112784_-	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	95.8	2.7e-59
WP_001187247.1|2112784_2112970_-	DUF3113 family protein	NA	B7T0B3	Staphylococcus_virus	93.4	1.1e-24
WP_078056504.1|2113438_2113852_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000123130.1|2113830_2114031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012840529.1|2114027_2115884_-	primase	NA	B6D7K5	Listeria_phage	40.8	3.6e-118
WP_000184025.1|2117658_2118294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001003951.1|2118316_2119075_-	DUF1351 domain-containing protein	NA	A0A2H4J082	uncultured_Caudovirales_phage	23.1	1.4e-07
WP_000171560.1|2119085_2119409_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	54.2	5.7e-24
WP_001105358.1|2119421_2120033_-	MBL fold metallo-hydrolase	NA	B6D7K1	Listeria_phage	45.6	4.1e-47
WP_000802314.1|2120055_2120292_-	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	83.1	5.5e-32
WP_000291082.1|2120299_2120560_-	DUF1108 family protein	NA	Q4ZDY8	Staphylococcus_virus	47.7	2.7e-16
WP_001285953.1|2120658_2120820_-	DUF1270 family protein	NA	A7TWM3	Staphylococcus_phage	96.2	5.6e-20
WP_001120202.1|2120816_2121137_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	98.1	5.6e-56
WP_000939498.1|2121287_2121431_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000362645.1|2121972_2122185_+	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	98.6	1.3e-32
WP_000771849.1|2122225_2122375_-	hypothetical protein	NA	D2JGJ0	Staphylococcus_phage	100.0	1.4e-20
WP_000435352.1|2122389_2122833_-	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	97.3	1.1e-73
WP_000272856.1|2122845_2123094_-	helix-turn-helix transcriptional regulator	NA	Q4ZBN5	Staphylococcus_phage	98.8	1.8e-38
WP_001260487.1|2123257_2123581_+	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000525014.1|2123593_2124055_+	hypothetical protein	NA	R4WEA5	Staphylococcus_phage	99.3	1.6e-83
WP_001025527.1|2124586_2125471_+	hypothetical protein	NA	A0A0K1LKD8	Staphylococcus_phage	91.8	3.4e-151
WP_001166555.1|2126243_2126411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_170172385.1|2127616_2128654_+|integrase	site-specific integrase	integrase	Q4ZCY6	Staphylococcus_virus	96.2	2.6e-171
WP_000595392.1|2129772_2130789_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_170172386.1|2130876_2131866_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	33.8	1.6e-32
WP_000206625.1|2132301_2133525_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045079.1|2133910_2135218_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000240647.1|2135757_2137374_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.5	1.3e-156
WP_000917289.1|2137449_2137734_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_170172387.1|2137908_2138652_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
2140938:2140962	attR	ACCCCAACTTGCATTGTCTGTAGAA	NA	NA	NA	NA
>prophage 10
NZ_CP053075	Staphylococcus aureus strain SA01 chromosome, complete genome	2883539	2181762	2201906	2883539	transposase,integrase	Streptococcus_phage(94.44%)	21	2173116:2173130	2192440:2192454
2173116:2173130	attL	AGCTTTTATCCGTTG	NA	NA	NA	NA
WP_001291561.1|2181762_2182980_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|2183061_2183265_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|2183725_2183956_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|2183952_2184375_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_001227347.1|2184879_2185233_+	helix-turn-helix domain-containing protein	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_000336323.1|2185292_2185460_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_000691727.1|2185578_2187498_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	100.0	0.0e+00
WP_001791010.1|2187513_2187630_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_001224319.1|2187874_2188807_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	100.0	1.1e-171
WP_000769868.1|2188803_2189805_-	lysozyme family protein	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_000804748.1|2189801_2191979_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|2194412_2194919_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
2192440:2192454	attR	CAACGGATAAAAGCT	NA	NA	NA	NA
WP_000342539.1|2194893_2195391_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|2195507_2195729_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|2195771_2196977_-	replication initiation factor	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|2196999_2197152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|2197154_2198540_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|2198568_2198955_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|2198970_2199285_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_001557163.1|2199693_2201013_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001041111.1|2201135_2201906_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	2.2e-21
>prophage 1
NZ_CP053077	Staphylococcus aureus strain SA01 plasmid pSA01-03, complete sequence	17257	0	5638	17257	protease,transposase	Staphylococcus_phage(50.0%)	7	NA	NA
WP_001002995.1|737_971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000872163.1|980_1391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001106066.1|1542_2217_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	91.5	9.9e-119
WP_000277644.1|2795_3479_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001022435.1|3653_3992_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_001129937.1|3988_4258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_170172431.1|4828_5638_+	alpha/beta hydrolase	NA	A0A220T682	Eptesipox_virus	25.4	3.8e-16
>prophage 2
NZ_CP053077	Staphylococcus aureus strain SA01 plasmid pSA01-03, complete sequence	17257	10242	12279	17257		Enterobacteria_phage(50.0%)	2	NA	NA
WP_001062591.1|10242_10797_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	44.3	7.1e-30
WP_015379478.1|11973_12279_-	aureocin A70 associated ABC transporter	NA	W8CYL7	Bacillus_phage	41.2	3.0e-06
>prophage 3
NZ_CP053077	Staphylococcus aureus strain SA01 plasmid pSA01-03, complete sequence	17257	15758	16550	17257		Enterococcus_phage(100.0%)	1	NA	NA
WP_000111526.1|15758_16550_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	35.2	1.9e-28
>prophage 1
NZ_CP053076	Staphylococcus aureus strain SA01 plasmid pSA01-tet, complete sequence	25664	5429	20938	25664	transposase	Staphylococcus_phage(63.64%)	16	NA	NA
WP_000336291.1|5429_6413_+	protein rep	NA	A0A286QS97	Streptococcus_phage	62.0	6.1e-08
WP_001795128.1|6572_7343_+	aminoglycoside O-nucleotidyltransferase ANT(4')-Ia	NA	NA	NA	NA	NA
WP_113589581.1|7668_8343_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	1.7e-126
WP_014158488.1|8422_9157_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(C)	NA	E4ZFQ0	Streptococcus_phage	50.8	1.6e-61
WP_002497446.1|9214_9274_-	23S rRNA methylase leader peptide ErmCL	NA	NA	NA	NA	NA
WP_014158489.1|9387_10062_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.2	1.9e-125
WP_031590646.1|10093_10357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_113805443.1|10823_11996_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.6	1.3e-134
WP_001028144.1|12125_13565_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000393259.1|13565_13958_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|14014_15187_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_050439888.1|15264_15765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031588345.1|15786_16416_-	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	32.0	2.8e-14
WP_050437591.1|16644_18024_-	Tet(L)/Tet(K)/Tet(45) family tetracycline efflux MFS transporter	NA	NA	NA	NA	NA
WP_170172426.1|18243_19389_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.8	1.3e-49
WP_170172427.1|19381_20938_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	71.3	6.1e-204
