assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013004045.1_ASM1300404v1	NZ_CP053080	Escherichia coli strain HB37 chromosome HB37, complete sequence	1	1911494-1911607	1	CRISPRCasFinder	no		WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	NA,NA	NA|62aa|up_9|NZ_CP053080.1_1901051_1901237_-	PRK09956, PRK09956, ISNCY family transposase	NA|320aa|up_8|NZ_CP053080.1_1901249_1902209_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP053080.1_1902401_1903592_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP053080.1_1903588_1904848_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP053080.1_1904837_1906466_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP053080.1_1906738_1908097_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP053080.1_1908101_1909178_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP053080.1_1909380_1910031_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP053080.1_1910084_1910339_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP053080.1_1910338_1911469_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP053080.1_1911658_1913944_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP053080.1_1914625_1918384_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP053080.1_1918523_1919246_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP053080.1_1919392_1922020_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP053080.1_1922168_1923857_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP053080.1_1923853_1924477_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP053080.1_1929014_1930664_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP053080.1_1930668_1931445_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP053080.1_1931518_1932703_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP053080.1_1932733_1934056_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_013004045.1_ASM1300404v1	NZ_CP053080	Escherichia coli strain HB37 chromosome HB37, complete sequence	2	3255724-3255815	2	CRISPRCasFinder	no		WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	NA|70aa|up_9|NZ_CP053080.1_3244975_3245185_-,NA	NA|70aa|up_9|NZ_CP053080.1_3244975_3245185_-	NA	NA|1321aa|up_8|NZ_CP053080.1_3245239_3249202_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP053080.1_3249241_3249880_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP053080.1_3250166_3251258_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP053080.1_3251257_3251950_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP053080.1_3251961_3252348_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP053080.1_3252355_3253156_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP053080.1_3253165_3253756_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP053080.1_3253766_3254261_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP053080.1_3254281_3255610_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP053080.1_3256238_3256835_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP053080.1_3256855_3257083_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP053080.1_3257120_3258362_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP053080.1_3258896_3259817_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP053080.1_3259816_3260122_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP053080.1_3260376_3260976_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP053080.1_3260972_3263519_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP053080.1_3263518_3264691_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP053080.1_3264820_3265513_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP053080.1_3265485_3266514_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_013004045.1_ASM1300404v1	NZ_CP053080	Escherichia coli strain HB37 chromosome HB37, complete sequence	3	3936875-3937010	3	CRISPRCasFinder	no		WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	Orphan	GCGCCACTCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGC	43	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	NA,NA|223aa|down_4|NZ_CP053080.1_3944039_3944708_+	NA|629aa|up_9|NZ_CP053080.1_3923484_3925371_-	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|484aa|up_8|NZ_CP053080.1_3925410_3926862_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|390aa|up_7|NZ_CP053080.1_3926895_3928065_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|up_6|NZ_CP053080.1_3928224_3929115_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|up_5|NZ_CP053080.1_3929353_3930940_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|up_4|NZ_CP053080.1_3931040_3931316_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|225aa|up_3|NZ_CP053080.1_3931462_3932137_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|350aa|up_2|NZ_CP053080.1_3933018_3934068_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|461aa|up_1|NZ_CP053080.1_3934444_3935827_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|up_0|NZ_CP053080.1_3935836_3936787_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|473aa|down_0|NZ_CP053080.1_3937033_3938452_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|516aa|down_1|NZ_CP053080.1_3938451_3939999_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|288aa|down_2|NZ_CP053080.1_3939988_3940852_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|398aa|down_3|NZ_CP053080.1_3941969_3943163_-	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain	NA|223aa|down_4|NZ_CP053080.1_3944039_3944708_+	NA	NA|232aa|down_5|NZ_CP053080.1_3944950_3945646_-	COG1556, COG1556, Uncharacterized conserved protein [Function unknown]	NA|476aa|down_6|NZ_CP053080.1_3945638_3947066_-	TIGR00273, Uncharacterized_electron_transport_protein_YkgF, iron-sulfur cluster-binding protein	NA|240aa|down_7|NZ_CP053080.1_3947076_3947796_-	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion]	NA|285aa|down_8|NZ_CP053080.1_3948322_3949177_-	cd06995, cupin_YkgD-like_N, AraC/XylS family transcriptional regulators similar to Escherichia coli YkgD, N-terminal cupin domain	NA|442aa|down_9|NZ_CP053080.1_3949403_3950729_+	PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional
GCF_013004045.1_ASM1300404v1	NZ_CP053080	Escherichia coli strain HB37 chromosome HB37, complete sequence	4	4632394-4632533	4	CRISPRCasFinder	no		WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	NA,NA	NA|340aa|up_9|NZ_CP053080.1_4620604_4621624_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP053080.1_4621627_4622191_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP053080.1_4622407_4623439_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP053080.1_4623462_4624227_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP053080.1_4624291_4625611_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP053080.1_4625677_4626676_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP053080.1_4626753_4628256_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP053080.1_4628416_4629499_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP053080.1_4629498_4630599_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP053080.1_4630865_4632377_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP053080.1_4632634_4633078_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP053080.1_4633077_4635933_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP053080.1_4635979_4637167_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP053080.1_4637359_4637863_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP053080.1_4638039_4638456_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP053080.1_4638617_4639622_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP053080.1_4639666_4640119_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP053080.1_4640796_4642017_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|315aa|down_8|NZ_CP053080.1_4642027_4642972_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP053080.1_4642982_4643987_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
GCF_013004045.1_ASM1300404v1	NZ_CP053080	Escherichia coli strain HB37 chromosome HB37, complete sequence	5	5062201-5062327	5	CRISPRCasFinder	no		WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	Orphan	TGCCGGATGCGGCACAAGTGCCTTATCCGGCCTAC	35	0	0	NA	NA	NA	1	1	Orphan	WYL,RT,cas3,PD-DExK,csa3,DEDDh,DinG	NA,NA	NA|233aa|up_9|NZ_CP053080.1_5051181_5051880_+	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR	NA|458aa|up_8|NZ_CP053080.1_5051876_5053250_+	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|225aa|up_7|NZ_CP053080.1_5053421_5054096_-	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional	NA|328aa|up_6|NZ_CP053080.1_5054244_5055228_-	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter	NA|207aa|up_5|NZ_CP053080.1_5055487_5056108_-	PRK10925, PRK10925, superoxide dismutase [Mn]	NA|345aa|up_4|NZ_CP053080.1_5056393_5057428_+	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT)	NA|313aa|up_3|NZ_CP053080.1_5057424_5058363_-	PRK13500, PRK13500, HTH-type transcriptional activator RhaR	NA|279aa|up_2|NZ_CP053080.1_5058346_5059183_-	PRK13503, PRK13503, HTH-type transcriptional activator RhaS	NA|490aa|up_1|NZ_CP053080.1_5059470_5060940_+	PRK10640, rhaB, rhamnulokinase; Provisional	NA|420aa|up_0|NZ_CP053080.1_5060936_5062196_+	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|275aa|down_0|NZ_CP053080.1_5062370_5063195_+	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|105aa|down_1|NZ_CP053080.1_5063204_5063519_+	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase	NA|465aa|down_2|NZ_CP053080.1_5063559_5064954_-	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|278aa|down_3|NZ_CP053080.1_5066086_5066920_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|1017aa|down_4|NZ_CP053080.1_5067113_5070164_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|301aa|down_5|NZ_CP053080.1_5070176_5071079_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|212aa|down_6|NZ_CP053080.1_5071075_5071711_+	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|310aa|down_7|NZ_CP053080.1_5071707_5072637_+	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional	NA|73aa|down_8|NZ_CP053080.1_5072851_5073070_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|97aa|down_9|NZ_CP053080.1_5073674_5073965_-	COG2944, COG2944, Predicted transcriptional regulator [Transcription]
