The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053069	Nitrosomonadales bacterium 0125_3 chromosome, complete genome	4563145	7937	18717	4563145	tRNA	Bacillus_phage(28.57%)	8	NA	NA
WP_171088681.1|7937_10532_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	34.9	5.0e-126
WP_171096098.1|10568_11462_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	37.4	2.2e-25
WP_171088682.1|11793_12966_-	LysM peptidoglycan-binding domain-containing protein	NA	G3MBQ1	Bacillus_virus	58.0	2.4e-11
WP_171088683.1|13161_13665_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	40.2	5.3e-16
WP_171088684.1|13684_14605_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	31.5	2.7e-10
WP_171088685.1|14780_15281_+	DUF4390 domain-containing protein	NA	NA	NA	NA	NA
WP_171088686.1|15288_17412_+	HAMP domain-containing protein	NA	W8CYF6	Bacillus_phage	26.2	1.9e-06
WP_171088687.1|17433_18717_+	sigma-54-dependent Fis family transcriptional regulator	NA	W8CYM9	Bacillus_phage	28.6	8.7e-07
>prophage 2
NZ_CP053069	Nitrosomonadales bacterium 0125_3 chromosome, complete genome	4563145	1380854	1390623	4563145		Acinetobacter_phage(33.33%)	7	NA	NA
WP_171090723.1|1380854_1381349_-	dihydrofolate reductase	NA	V9LZM6	Vibrio_phage	40.6	1.8e-29
WP_171090725.1|1381356_1382151_-	thymidylate synthase	NA	A0A2R4A1R4	Microbacterium_phage	63.2	4.3e-97
WP_171090727.1|1382147_1382645_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_171090729.1|1382754_1385475_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	27.4	1.4e-54
WP_171090731.1|1385722_1387030_-	ATP-binding protein	NA	W8CYF6	Bacillus_phage	25.0	1.7e-18
WP_171096282.1|1387057_1387783_-	response regulator	NA	W8CYM9	Bacillus_phage	31.8	1.3e-31
WP_171090733.1|1387860_1390623_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	26.3	4.9e-47
>prophage 3
NZ_CP053069	Nitrosomonadales bacterium 0125_3 chromosome, complete genome	4563145	2666084	2675359	4563145		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_171092720.1|2666084_2666741_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	44.2	8.1e-33
WP_171092722.1|2666737_2667484_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.4	4.7e-69
WP_171092724.1|2667550_2669563_+	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	29.6	4.1e-67
WP_171092726.1|2669567_2671589_+	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	30.6	4.8e-68
WP_171092728.1|2671599_2672364_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.6	4.1e-12
WP_171092730.1|2672473_2675359_-	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	53.0	3.8e-268
