assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	1	775009-775094	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CAATGCGAGTTGGGGTGGGGCCCCAACA	28	1	1	775037-775066	NZ_CP053070.1_816108-816079	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|69aa|up_9|NZ_CP053070.1_761852_762059_+,NA|34aa|down_1|NZ_CP053070.1_776537_776639_+,NA|52aa|down_8|NZ_CP053070.1_784803_784959_+	NA|69aa|up_9|NZ_CP053070.1_761852_762059_+	NA	NA|237aa|up_8|NZ_CP053070.1_762155_762866_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP053070.1_762849_763854_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP053070.1_764327_766268_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP053070.1_766538_768422_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP053070.1_768433_770215_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP053070.1_770436_771414_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP053070.1_771406_772921_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP053070.1_773160_774219_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP053070.1_774377_774920_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP053070.1_775527_776445_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP053070.1_776537_776639_+	NA	NA|502aa|down_2|NZ_CP053070.1_776716_778222_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|167aa|down_3|NZ_CP053070.1_778561_779062_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_4|NZ_CP053070.1_779081_779948_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|133aa|down_5|NZ_CP053070.1_780748_781147_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_6|NZ_CP053070.1_781109_783215_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_7|NZ_CP053070.1_783332_784304_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|52aa|down_8|NZ_CP053070.1_784803_784959_+	NA	NA|324aa|down_9|NZ_CP053070.1_784997_785969_+	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	2	952315-952472	1,2	PILER-CR,CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCATTGCTTGTAGAATCTCTTTTCGAAATTCT,TCTTTTCGAAATTCTCTGTGTTGGGGCCC	39,29	1	12	952422-952440|952422-952440|952422-952440|952422-952440|952422-952440|952422-952440|952422-952440|952422-952440|952422-952440|952422-952440|952422-952440|952422-952440	NZ_CP053070.1_821424-821442|NZ_CP053070.1_830593-830611|NZ_CP053070.1_1292364-1292382|NZ_CP053070.1_1292422-1292440|NZ_CP053070.1_2030761-2030779|NZ_CP053070.1_2371722-2371704|NZ_CP053070.1_183460-183478|NZ_CP053070.1_622033-622015|NZ_CP053070.1_932149-932131|NZ_CP053070.1_1151080-1151062|NZ_CP053070.1_1367000-1367018|NZ_CP053070.1_1707628-1707646	NA:NA	2,1	2	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|192aa|up_9|NZ_CP053070.1_938753_939329_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP053070.1_939333_939858_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP053070.1_939873_940449_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP053070.1_940608_944085_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP053070.1_944085_947739_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP053070.1_947904_948807_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP053070.1_949134_949524_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP053070.1_949695_951012_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP053070.1_951063_951888_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP053070.1_952001_952310_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP053070.1_952963_954778_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP053070.1_954980_957590_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP053070.1_957648_958518_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP053070.1_958627_959773_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP053070.1_959756_960398_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|172aa|down_5|NZ_CP053070.1_961492_962008_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_6|NZ_CP053070.1_962318_962753_+	pfam03642, MAP, MAP domain	NA|62aa|down_7|NZ_CP053070.1_963009_963195_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_8|NZ_CP053070.1_963489_964431_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3	NA|415aa|down_9|NZ_CP053070.1_964442_965687_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	3	1070839-1070931	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	AAAAGCCCCTAACAACTAAAGGTTGTAAGG	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA,NA|45aa|down_0|NZ_CP053070.1_1070940_1071075_-,NA|432aa|down_1|NZ_CP053070.1_1071226_1072522_+	NA|224aa|up_9|NZ_CP053070.1_1058633_1059305_+	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|730aa|up_8|NZ_CP053070.1_1059297_1061487_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_7|NZ_CP053070.1_1061465_1062950_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_6|NZ_CP053070.1_1062942_1063971_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_5|NZ_CP053070.1_1063973_1064540_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_4|NZ_CP053070.1_1064554_1066033_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_3|NZ_CP053070.1_1066054_1067302_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_2|NZ_CP053070.1_1067567_1068374_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_1|NZ_CP053070.1_1068366_1069767_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_0|NZ_CP053070.1_1069781_1070357_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|45aa|down_0|NZ_CP053070.1_1070940_1071075_-	NA	NA|432aa|down_1|NZ_CP053070.1_1071226_1072522_+	NA	NA|391aa|down_2|NZ_CP053070.1_1072946_1074119_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP053070.1_1074172_1074715_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP053070.1_1074868_1075135_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP053070.1_1075137_1076856_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP053070.1_1077092_1077326_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP053070.1_1077523_1078885_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP053070.1_1078881_1079901_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP053070.1_1080033_1080696_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	4	1229655-1229747	4	CRISPRCasFinder	no	cas3	WYL,cas3,DEDDh,DinG,csa3	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	WYL,cas3,DEDDh,DinG,csa3	NA,NA	NA|215aa|up_9|NZ_CP053070.1_1219529_1220174_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP053070.1_1220180_1220822_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP053070.1_1221203_1221392_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP053070.1_1221834_1222209_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP053070.1_1222223_1223870_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP053070.1_1224059_1226120_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP053070.1_1226321_1226894_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP053070.1_1226898_1227885_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP053070.1_1227877_1228804_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP053070.1_1228796_1229531_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP053070.1_1229836_1230070_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP053070.1_1230185_1230917_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP053070.1_1231063_1234630_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP053070.1_1234629_1235880_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP053070.1_1235866_1236199_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP053070.1_1236224_1237592_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP053070.1_1237937_1238213_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP053070.1_1238400_1238904_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP053070.1_1238903_1239641_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP053070.1_1239743_1240094_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	5	1437713-1437792	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|68aa|up_5|NZ_CP053070.1_1429193_1429397_-,NA	NA|379aa|up_9|NZ_CP053070.1_1423543_1424680_+	pfam05816, TelA, Toxic anion resistance protein (TelA)	NA|448aa|up_8|NZ_CP053070.1_1424753_1426097_-	COG1114, BrnQ, Branched-chain amino acid permeases [Amino acid transport and metabolism]	NA|629aa|up_7|NZ_CP053070.1_1426321_1428208_-	COG4548, NorD, Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]	NA|264aa|up_6|NZ_CP053070.1_1428221_1429013_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|68aa|up_5|NZ_CP053070.1_1429193_1429397_-	NA	NA|270aa|up_4|NZ_CP053070.1_1429425_1430235_-	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins	NA|423aa|up_3|NZ_CP053070.1_1430814_1432083_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|933aa|up_2|NZ_CP053070.1_1432096_1434895_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|452aa|up_1|NZ_CP053070.1_1435183_1436539_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|220aa|up_0|NZ_CP053070.1_1436535_1437195_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|205aa|down_0|NZ_CP053070.1_1438336_1438951_-	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|357aa|down_1|NZ_CP053070.1_1438967_1440038_-	PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed	NA|170aa|down_2|NZ_CP053070.1_1440049_1440559_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|497aa|down_3|NZ_CP053070.1_1440958_1442449_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|74aa|down_4|NZ_CP053070.1_1442640_1442862_-	COG4479, COG4479, Uncharacterized protein conserved in bacteria [Function unknown]	NA|167aa|down_5|NZ_CP053070.1_1442861_1443362_-	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|143aa|down_6|NZ_CP053070.1_1443373_1443802_-	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|178aa|down_7|NZ_CP053070.1_1443794_1444328_-	PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional	NA|280aa|down_8|NZ_CP053070.1_1444417_1445257_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|160aa|down_9|NZ_CP053070.1_1445271_1445751_-	pfam00186, DHFR_1, Dihydrofolate reductase
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	6	2029308-2029389	6	CRISPRCasFinder	no	DEDDh	WYL,cas3,DEDDh,DinG,csa3	Unclear	TGTTGGGGCCCCGCCAACCTGCATT	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|92aa|up_6|NZ_CP053070.1_2023505_2023781_+,NA|129aa|up_1|NZ_CP053070.1_2027763_2028150_-,NA|138aa|down_1|NZ_CP053070.1_2031072_2031486_-,NA|37aa|down_2|NZ_CP053070.1_2031514_2031625_-,NA|31aa|down_6|NZ_CP053070.1_2034630_2034723_-	NA|419aa|up_9|NZ_CP053070.1_2021428_2022685_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP053070.1_2022687_2022888_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP053070.1_2023034_2023499_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP053070.1_2023505_2023781_+	NA	NA|406aa|up_5|NZ_CP053070.1_2024058_2025276_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP053070.1_2025388_2026018_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP053070.1_2026007_2027051_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP053070.1_2027047_2027749_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP053070.1_2027763_2028150_-	NA	NA|253aa|up_0|NZ_CP053070.1_2028366_2029125_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP053070.1_2029653_2030640_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP053070.1_2031072_2031486_-	NA	NA|37aa|down_2|NZ_CP053070.1_2031514_2031625_-	NA	NA|244aa|down_3|NZ_CP053070.1_2031710_2032442_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP053070.1_2032443_2033757_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP053070.1_2034048_2034549_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP053070.1_2034630_2034723_-	NA	DEDDh|185aa|down_7|NZ_CP053070.1_2034939_2035494_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP053070.1_2035560_2036631_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP053070.1_2036877_2037408_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	7	2089823-2089908	7	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TGTTGAGGCCCCACCCCAACTTACATTGT	29	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|59aa|up_6|NZ_CP053070.1_2079963_2080140_-,NA|33aa|up_5|NZ_CP053070.1_2080381_2080480_-,NA	NA|227aa|up_9|NZ_CP053070.1_2077468_2078149_-	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein	NA|299aa|up_8|NZ_CP053070.1_2078149_2079046_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|127aa|up_7|NZ_CP053070.1_2079042_2079423_-	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|59aa|up_6|NZ_CP053070.1_2079963_2080140_-	NA	NA|33aa|up_5|NZ_CP053070.1_2080381_2080480_-	NA	NA|429aa|up_4|NZ_CP053070.1_2080679_2081966_+	PRK08637, PRK08637, hypothetical protein; Provisional	NA|331aa|up_3|NZ_CP053070.1_2084370_2085363_+	TIGR03395, Sphingomyelinase_C, sphingomyelin phosphodiesterase	NA|339aa|up_2|NZ_CP053070.1_2085855_2086872_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP053070.1_2086893_2087949_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP053070.1_2088384_2089608_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP053070.1_2090048_2091356_+	COG0168, TrkG, Trk-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|539aa|down_1|NZ_CP053070.1_2091896_2093513_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_2|NZ_CP053070.1_2093588_2093873_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_3|NZ_CP053070.1_2094047_2094791_+	pfam02517, Abi, CAAX protease self-immunity	NA|400aa|down_4|NZ_CP053070.1_2094815_2096015_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_5|NZ_CP053070.1_2096211_2096838_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_6|NZ_CP053070.1_2097198_2097984_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_7|NZ_CP053070.1_2098582_2098717_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|190aa|down_8|NZ_CP053070.1_2098952_2099522_+	smart00793, AgrB, Accessory gene regulator B	NA|47aa|down_9|NZ_CP053070.1_2099518_2099659_+	pfam05931, AgrD, Staphylococcal AgrD protein
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	8	2337401-2337485	8	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTATGCTGACTTT	30	1	4	2337431-2337455|2337431-2337455|2337431-2337455|2337431-2337455	NZ_CP053070.1_1155223-1155199|NZ_CP053070.1_1882157-1882181|NZ_CP053070.1_2337487-2337511|NZ_CP053070.1_1155167-1155143	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|55aa|up_9|NZ_CP053070.1_2327908_2328073_+,NA|106aa|up_8|NZ_CP053070.1_2328317_2328635_+,NA|84aa|up_5|NZ_CP053070.1_2333759_2334011_+,NA|57aa|up_0|NZ_CP053070.1_2337151_2337322_+,NA	NA|55aa|up_9|NZ_CP053070.1_2327908_2328073_+	NA	NA|106aa|up_8|NZ_CP053070.1_2328317_2328635_+	NA	NA|1056aa|up_7|NZ_CP053070.1_2328821_2331989_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP053070.1_2332105_2333371_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP053070.1_2333759_2334011_+	NA	NA|255aa|up_4|NZ_CP053070.1_2334002_2334767_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP053070.1_2334929_2335370_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP053070.1_2335362_2336574_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP053070.1_2336675_2337026_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP053070.1_2337151_2337322_+	NA	NA|341aa|down_0|NZ_CP053070.1_2337662_2338685_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP053070.1_2338704_2339304_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP053070.1_2339310_2339544_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP053070.1_2339549_2339996_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP053070.1_2340009_2340495_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP053070.1_2340491_2341751_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP053070.1_2341813_2342308_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP053070.1_2342309_2342816_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP053070.1_2342846_2343851_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP053070.1_2344019_2344625_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	9	2491967-2492059	9	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	TTCTTCAAATTTATTTGTTAGAAAG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|35aa|up_2|NZ_CP053070.1_2489620_2489725_+,NA|32aa|down_0|NZ_CP053070.1_2492263_2492359_-	NA|200aa|up_9|NZ_CP053070.1_2483097_2483697_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|121aa|up_8|NZ_CP053070.1_2483715_2484078_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|up_7|NZ_CP053070.1_2484332_2485583_+	pfam02388, FemAB, FemAB family	NA|244aa|up_6|NZ_CP053070.1_2485679_2486411_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|240aa|up_5|NZ_CP053070.1_2486407_2487127_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|260aa|up_4|NZ_CP053070.1_2487107_2487887_-	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|480aa|up_3|NZ_CP053070.1_2488007_2489447_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|35aa|up_2|NZ_CP053070.1_2489620_2489725_+	NA	NA|229aa|up_1|NZ_CP053070.1_2489878_2490565_-	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|289aa|up_0|NZ_CP053070.1_2490890_2491757_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|32aa|down_0|NZ_CP053070.1_2492263_2492359_-	NA	NA|437aa|down_1|NZ_CP053070.1_2492453_2493764_+	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|310aa|down_2|NZ_CP053070.1_2494255_2495185_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|316aa|down_3|NZ_CP053070.1_2495752_2496700_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|326aa|down_4|NZ_CP053070.1_2496701_2497679_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|156aa|down_5|NZ_CP053070.1_2497730_2498198_-	pfam06177, QueT, QueT transporter	NA|231aa|down_6|NZ_CP053070.1_2498208_2498901_-	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|372aa|down_7|NZ_CP053070.1_2498911_2500027_-	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|336aa|down_8|NZ_CP053070.1_2500004_2501012_-	PRK06256, PRK06256, biotin synthase; Validated	NA|453aa|down_9|NZ_CP053070.1_2501013_2502372_-	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase
GCF_013003945.1_ASM1300394v1	NZ_CP053070	Staphylococcus aureus subsp. aureus strain HL20709 isolate HL20709 chromosome, complete genome	10	2853509-2853594	10	CRISPRCasFinder	no		WYL,cas3,DEDDh,DinG,csa3	Orphan	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	12	2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564|2853539-2853564	NZ_CP053070.1_622099-622074|NZ_CP053070.1_1155338-1155313|NZ_CP053070.1_1292297-1292322|NZ_CP053070.1_784495-784470|NZ_CP053070.1_784551-784526|NZ_CP053070.1_1853336-1853311|NZ_CP053070.1_2371787-2371762|NZ_CP053070.1_830469-830494|NZ_CP053070.1_2079777-2079802|NZ_CP053070.1_2255030-2255055|NZ_CP053070.1_2175716-2175691|NZ_CP053070.1_2176054-2176029	NA	1	1	Orphan	WYL,cas3,DEDDh,DinG,csa3	NA|64aa|up_6|NZ_CP053070.1_2848986_2849178_+,NA|166aa|up_5|NZ_CP053070.1_2849784_2850282_-,NA|64aa|up_4|NZ_CP053070.1_2850738_2850930_+,NA	NA|171aa|up_9|NZ_CP053070.1_2845463_2845976_-	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|253aa|up_8|NZ_CP053070.1_2846265_2847024_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|627aa|up_7|NZ_CP053070.1_2847013_2848894_+	pfam02687, FtsX, FtsX-like permease family	NA|64aa|up_6|NZ_CP053070.1_2848986_2849178_+	NA	NA|166aa|up_5|NZ_CP053070.1_2849784_2850282_-	NA	NA|64aa|up_4|NZ_CP053070.1_2850738_2850930_+	NA	NA|67aa|up_3|NZ_CP053070.1_2851321_2851522_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|190aa|up_2|NZ_CP053070.1_2851648_2852218_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|132aa|up_1|NZ_CP053070.1_2852468_2852864_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|118aa|up_0|NZ_CP053070.1_2852931_2853285_-	pfam11345, DUF3147, Protein of unknown function (DUF3147)	NA|280aa|down_0|NZ_CP053070.1_2853894_2854734_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|240aa|down_1|NZ_CP053070.1_2854776_2855496_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|626aa|down_2|NZ_CP053070.1_2855495_2857373_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|460aa|down_3|NZ_CP053070.1_2857439_2858819_-	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA|118aa|down_4|NZ_CP053070.1_2858962_2859316_-	PRK00499, rnpA, ribonuclease P; Reviewed	NA|46aa|down_5|NZ_CP053070.1_2859436_2859574_-	pfam00468, Ribosomal_L34, Ribosomal protein L34	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
