The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	126845	185884	5232360	head,tail,portal,protease,capsid,transposase,terminase,integrase	Paracoccus_phage(17.65%)	69	152646:152662	166815:166831
WP_086485527.1|126845_128369_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_069338825.1|128358_129165_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	32.7	2.0e-33
WP_169859852.1|129218_129602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859854.1|129686_129932_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859856.1|130166_130721_+	recombinase family protein	NA	NA	NA	NA	NA
WP_169859858.1|130746_131004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859860.1|131303_132242_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA	NA
WP_007713310.1|132273_132468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859861.1|132581_134162_-	alkyl hydroperoxide reductase subunit F	NA	A0A2I2L5E1	Orpheovirus	33.0	1.4e-33
WP_004210655.1|134349_134913_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_169859863.1|135047_135650_-	transcriptional regulator BetI	NA	NA	NA	NA	NA
WP_048938282.1|135820_136303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859864.1|136908_137763_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_099231855.1|137752_138778_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_169859866.1|138755_140120_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_169859867.1|140206_142471_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_169859869.1|142650_144096_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.7	1.0e-43
WP_169859870.1|144101_144539_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_004210674.1|144652_145075_+	nucleoside-diphosphate kinase	NA	M1PH31	Moumouvirus	36.9	7.3e-11
WP_169859872.1|145346_145985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859874.1|145989_146664_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_169859876.1|146886_149181_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_169859878.1|149183_150326_+	phosphotransferase	NA	NA	NA	NA	NA
WP_169859879.1|150325_150892_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA	NA
152646:152662	attL	CCAGAAGGCGCAGCGAG	NA	NA	NA	NA
WP_169859881.1|153388_153760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863160.1|154621_154795_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_169859883.1|154969_155869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859885.1|155865_157062_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q7M297	Enterobacteria_phage	37.5	5.9e-66
WP_169859886.1|157649_157817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859888.1|157889_158279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859890.1|158297_158735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859892.1|158764_158917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859893.1|159262_159448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859895.1|159453_159789_-	ammonia monooxygenase	NA	G8GWD9	Rhodobacter_phage	57.4	6.8e-28
WP_169859897.1|159788_160475_-	DUF3380 domain-containing protein	NA	A0A0K1LN56	Caulobacter_phage	45.6	1.1e-43
WP_169859899.1|160501_160849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863162.1|160878_161430_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859901.1|161494_161653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859903.1|161976_163743_-	acyltransferase	NA	W6MVL2	Pseudomonas_phage	29.7	3.8e-29
WP_169859905.1|164138_165071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859906.1|165118_167125_-	hypothetical protein	NA	NA	NA	NA	NA
166815:166831	attR	CCAGAAGGCGCAGCGAG	NA	NA	NA	NA
WP_169859908.1|167121_167523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859910.1|167547_167826_-	PE-PGRS family protein	NA	NA	NA	NA	NA
WP_169859912.1|167825_169115_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859914.1|169080_169263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859915.1|169369_169726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169859916.1|169706_170048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859917.1|170044_170626_-	hypothetical protein	NA	W6ASE7	Acinetobacter_phage	28.7	4.1e-12
WP_169859918.1|170622_171309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859919.1|171301_174574_-|tail	phage tail tape measure protein	tail	I3NL90	Bifidobacterium_phage	29.4	1.2e-36
WP_169859920.1|174577_174745_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859921.1|174789_175248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859922.1|175249_175690_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_169859923.1|175692_176115_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_169859924.1|176116_176560_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_169859925.1|176563_176917_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_169859926.1|176916_177519_-	hypothetical protein	NA	I3UM02	Rhodobacter_phage	30.3	9.4e-12
WP_169859927.1|177518_177818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863164.1|177867_179052_-|capsid	phage major capsid protein	capsid	I7HDH9	Xanthomonas_virus	55.8	3.4e-90
WP_169859928.1|179206_179875_-|head,protease	HK97 family phage prohead protease	head,protease	A0A0U2BX10	Paracoccus_phage	47.7	3.2e-45
WP_099230274.1|179861_181139_-|portal	phage portal protein	portal	A0A0U2BXP2	Paracoccus_phage	43.4	1.2e-85
WP_169859929.1|181135_183010_-|terminase	terminase large subunit	terminase	A0A0U2C138	Paracoccus_phage	48.8	1.8e-154
WP_169859930.1|182966_183368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859931.1|183544_183811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859932.1|183795_184212_-	HNH endonuclease	NA	A0A1X9I6D0	Streptococcus_phage	42.1	4.4e-08
WP_169859933.1|184156_184312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859934.1|184490_185093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859935.1|185121_185619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169859936.1|185569_185884_-	hypothetical protein	NA	I4AZL2	Saccharomonospora_phage	38.0	5.2e-06
>prophage 2
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	613024	618650	5232360		uncultured_Mediterranean_phage(66.67%)	8	NA	NA
WP_169860180.1|613024_613807_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	31.5	4.8e-32
WP_004207977.1|613803_614397_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	43.9	8.9e-39
WP_004207976.1|614425_614665_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	75.0	4.0e-06
WP_004207975.1|614691_615156_+	hypothetical protein	NA	NA	NA	NA	NA
WP_097384203.1|615152_615944_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	41.6	1.7e-45
WP_004207973.1|615979_616108_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_169863215.1|616482_617460_-	cell wall hydrolase	NA	A0A0S1WEP8	Vibrio_phage	31.0	6.0e-08
WP_169860181.1|617657_618650_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	41.3	1.5e-51
>prophage 3
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	1091082	1099637	5232360	terminase	uncultured_Caudovirales_phage(57.14%)	9	NA	NA
WP_063977097.1|1091082_1092030_-	DUF2184 domain-containing protein	NA	A0A2H4J526	uncultured_Caudovirales_phage	39.3	1.1e-51
WP_169860449.1|1092046_1092520_-	hypothetical protein	NA	A0A2H4J1G1	uncultured_Caudovirales_phage	48.7	5.5e-15
WP_169863253.1|1092532_1093894_-	DUF2213 domain-containing protein	NA	A0A2H4J6J7	uncultured_Caudovirales_phage	44.2	1.1e-34
WP_169860450.1|1093967_1094837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169860451.1|1094841_1095027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169860452.1|1095028_1096978_-	DUF1073 domain-containing protein	NA	A0A2H4J4I9	uncultured_Caudovirales_phage	37.7	5.2e-112
WP_169863254.1|1097024_1098377_-|terminase	phage terminase large subunit	terminase	W8VT11	Pseudomonas_phage	48.3	7.8e-115
WP_169860453.1|1098498_1098999_-	DUF2280 domain-containing protein	NA	H9C190	Pectobacterium_phage	50.7	2.2e-30
WP_169860454.1|1099013_1099637_-	hypothetical protein	NA	A0A1B0VRJ1	Pseudomonas_phage	46.9	2.7e-46
>prophage 4
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	1110826	1116476	5232360		Sinorhizobium_phage(16.67%)	8	NA	NA
WP_169860477.1|1110826_1112110_+	hypothetical protein	NA	A0A076G8D7	Sinorhizobium_phage	36.7	1.0e-15
WP_169860478.1|1112112_1112943_+	YqaJ viral recombinase family protein	NA	A0A2L0HJW4	Mycobacterium_phage	36.9	2.7e-33
WP_169860479.1|1112939_1114073_+	AAA family ATPase	NA	Q94MN8	Myxococcus_phage	29.4	1.6e-15
WP_169860480.1|1114072_1114588_+	HNH endonuclease	NA	A5HL46	Phormidium_virus	37.1	9.5e-05
WP_169860481.1|1114575_1115082_+	single-stranded DNA-binding protein	NA	A0A0U2C0X4	Paracoccus_phage	72.9	6.6e-43
WP_069338365.1|1115113_1115374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169860482.1|1115373_1115658_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169860483.1|1115717_1116476_+	DUF5131 family protein	NA	A0A240F4U9	Ochrobactrum_phage	50.9	6.6e-63
>prophage 5
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	1927007	1956108	5232360	tRNA,integrase,protease,transposase	Escherichia_phage(10.0%)	27	1933734:1933749	1962811:1962826
WP_169863285.1|1927007_1928096_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_169860911.1|1929601_1929880_+	type II toxin-antitoxin system ParD family antitoxin	NA	A0A0N7C055	Escherichia_phage	52.9	4.9e-16
WP_169863286.1|1930723_1930990_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	58.0	2.3e-18
WP_169863287.1|1931504_1931717_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_169860912.1|1932164_1932929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_169860913.1|1933020_1934064_+	TonB-dependent receptor plug domain-containing protein	NA	NA	NA	NA	NA
1933734:1933749	attL	CGACACGGTGCTGGCC	NA	NA	NA	NA
WP_086485527.1|1934160_1935684_+|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
WP_169860914.1|1935673_1936480_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	32.7	2.6e-33
WP_169863288.1|1936533_1937100_-	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
WP_169860915.1|1937362_1937686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169860916.1|1937958_1939005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169860917.1|1939259_1940000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169860918.1|1940155_1941226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169860919.1|1941218_1942634_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_169860920.1|1943180_1943441_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_169860921.1|1943427_1943571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169860922.1|1944144_1945197_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_169860923.1|1945180_1946167_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.6	3.7e-13
WP_004207133.1|1946214_1947378_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	33.8	1.1e-45
WP_169860924.1|1947374_1948001_+	dTMP kinase	NA	Q2Z0N0	Pseudomonas_phage	32.5	5.9e-17
WP_169860925.1|1947997_1948969_+	AAA family ATPase	NA	A0A1U9WR94	Streptococcus_virus	29.9	2.3e-07
WP_169860926.1|1949012_1950581_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.8	1.4e-91
WP_169860927.1|1950584_1951373_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_169860928.1|1951369_1952158_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_169860929.1|1952157_1952817_+|protease	TIGR02281 family clan AA aspartic protease	protease	NA	NA	NA	NA
WP_169860930.1|1952813_1954118_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	31.5	4.2e-49
WP_126000377.1|1955357_1956108_+|transposase	IS5 family transposase	transposase	A0A0N9SHJ4	Paenibacillus_phage	43.0	2.1e-24
1962811:1962826	attR	CGACACGGTGCTGGCC	NA	NA	NA	NA
>prophage 6
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	3213511	3223812	5232360	head,tail,portal,protease,capsid,terminase	uncultured_marine_virus(33.33%)	13	NA	NA
WP_169861608.1|3213511_3213835_-|head,tail	head-tail adaptor protein	head,tail	NA	NA	NA	NA
WP_169861609.1|3213880_3214066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169861610.1|3214077_3214641_-|head,tail	phage head-tail connector protein	head,tail	NA	NA	NA	NA
WP_169861611.1|3214746_3215868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169861612.1|3215894_3216059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169861613.1|3216070_3217255_-|capsid	phage major capsid protein	capsid	A0A0F7L2V9	uncultured_marine_virus	39.8	3.1e-67
WP_169863345.1|3217306_3217897_-|head,protease	HK97 family phage prohead protease	head,protease	Q9ZXB1	Streptomyces_phage	41.0	9.2e-20
WP_169861614.1|3217907_3219215_-|portal	phage portal protein	portal	A0A0F7L418	uncultured_marine_virus	40.3	4.2e-73
WP_169861615.1|3219266_3220889_-|terminase	terminase large subunit	terminase	K7P7T5	Enterobacteria_phage	36.6	3.7e-87
WP_169861616.1|3220885_3221335_-|terminase	P27 family phage terminase small subunit	terminase	Q9B019	Phage_GMSE-1	31.1	2.0e-06
WP_169861617.1|3221429_3222095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169861618.1|3222315_3223392_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_169861619.1|3223485_3223812_-	HNH endonuclease	NA	C4ML58	Xanthomonas_virus	54.3	9.9e-16
>prophage 7
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	4407207	4460314	5232360	integrase,transposase	Enterobacteria_phage(37.5%)	47	4421170:4421185	4462576:4462591
WP_169862252.1|4407207_4408161_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_069338986.1|4408486_4408921_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_069338987.1|4408917_4409397_+	RES domain-containing protein	NA	NA	NA	NA	NA
WP_169862254.1|4409654_4411058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_125990377.1|4411228_4412053_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_169863388.1|4412264_4413320_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_169862256.1|4413352_4413511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169862257.1|4413640_4415512_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_169862259.1|4415918_4417412_+	phosphomannomutase	NA	NA	NA	NA	NA
WP_169862261.1|4417707_4418712_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_169863389.1|4418794_4419607_-	class I mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_069335419.1|4419654_4420524_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	55.8	5.1e-91
WP_069335420.1|4420547_4421435_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
4421170:4421185	attL	GCCGCCTGCGCCACCG	NA	NA	NA	NA
WP_069335421.1|4421431_4422496_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	50.7	3.2e-95
WP_069335422.1|4422499_4423066_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	45.1	6.5e-39
WP_069335423.1|4423100_4424246_-	polysaccharide export protein	NA	NA	NA	NA	NA
WP_169862262.1|4424422_4425586_+	capsule biosynthesis protein	NA	NA	NA	NA	NA
WP_069335425.1|4425588_4426386_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_069335426.1|4426382_4427030_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.6	6.1e-09
WP_169862264.1|4427069_4429997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169862266.1|4429993_4432822_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_169862268.1|4432925_4433846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169862270.1|4433917_4436524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169862272.1|4436644_4437604_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_069337628.1|4437644_4438400_-	hypothetical protein	NA	A0A0P0YLT6	Yellowstone_lake_mimivirus	34.7	1.0e-10
WP_169862273.1|4438399_4440037_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_169862275.1|4440170_4440869_+	ParA family protein	NA	A0A0A8IL09	Aurantimonas_phage	44.7	9.2e-43
WP_069337474.1|4440865_4441255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069337475.1|4441485_4442484_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	30.7	5.7e-38
WP_069337476.1|4442552_4442846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010338606.1|4442946_4443981_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_169862277.1|4444759_4445029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169862278.1|4445199_4447242_+	conjugal transfer protein TraG	NA	NA	NA	NA	NA
WP_169862280.1|4447244_4447646_+	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_169863390.1|4447699_4448692_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_137405897.1|4448695_4449037_+	TrbC/VIRB2 family protein	NA	NA	NA	NA	NA
WP_063976652.1|4449045_4449318_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA	NA
WP_169862282.1|4449311_4451777_+	conjugal transfer protein TrbE	NA	NA	NA	NA	NA
WP_169862284.1|4451776_4452532_+	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_169862286.1|4452666_4453989_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_169862288.1|4453992_4454820_+	conjugal transfer protein TrbF	NA	NA	NA	NA	NA
WP_063976657.1|4454816_4455653_+	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_169862289.1|4455649_4456852_+	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_169862291.1|4456853_4457084_+	DUF2274 domain-containing protein	NA	NA	NA	NA	NA
WP_169862293.1|4457301_4458594_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_063976660.1|4458583_4458919_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_169862294.1|4459084_4460314_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	41.2	9.4e-75
4462576:4462591	attR	CGGTGGCGCAGGCGGC	NA	NA	NA	NA
>prophage 8
NZ_CP053021	Sphingobium yanoikuyae strain YC-XJ2 chromosome, complete genome	5232360	4984368	5042827	5232360	integrase,protease,transposase	Geobacillus_phage(11.11%)	50	5014208:5014224	5053770:5053786
WP_169863424.1|4984368_4985715_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_169863425.1|4985881_4988596_-	ribonuclease E/G	NA	NA	NA	NA	NA
WP_169862884.1|4989127_4990408_+	N-acetylmuramoyl-L-alanine amidase	NA	Q0H257	Geobacillus_phage	33.0	1.5e-14
WP_169862886.1|4990544_4993079_+	transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_169862888.1|4993112_4993550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004210053.1|4993778_4994906_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_169862890.1|4994905_4995631_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_029547609.1|4996252_4996771_-	sterol desaturase family protein	NA	NA	NA	NA	NA
WP_069335594.1|4996886_4997627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169862892.1|4997898_4999194_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_169862893.1|4999190_5000399_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_169862896.1|5000395_5001244_-	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA	NA
WP_169863426.1|5001310_5002630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004210067.1|5002739_5003192_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	51.4	3.6e-24
WP_169862898.1|5003448_5006097_+	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	28.0	3.1e-75
WP_169862900.1|5006146_5006551_+	NUDIX domain-containing protein	NA	NA	NA	NA	NA
WP_169862901.1|5006593_5007664_-	phytase	NA	NA	NA	NA	NA
WP_169862903.1|5007675_5009076_-	metallophosphoesterase family protein	NA	NA	NA	NA	NA
WP_017499045.1|5012086_5012227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004210075.1|5012372_5014337_-	oligopeptide transporter, OPT family	NA	NA	NA	NA	NA
5014208:5014224	attL	AGGTCAGGCCGATCTTG	NA	NA	NA	NA
WP_169862905.1|5014427_5015216_-	lipolytic enzyme	NA	NA	NA	NA	NA
WP_004210078.1|5015172_5015544_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_021226406.1|5015966_5017325_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q8W6M6	Sinorhizobium_phage	49.5	2.2e-109
WP_169863427.1|5017462_5018284_-|transposase	transposase	transposase	A0A0R6PHP9	Moraxella_phage	35.0	2.3e-21
WP_169862906.1|5018639_5018876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161731148.1|5020316_5021204_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_169863428.1|5021200_5021959_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_137405537.1|5022107_5022317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169862908.1|5022440_5023559_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_169862910.1|5023555_5024353_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_161731146.1|5024453_5024897_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_137405533.1|5024896_5025094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169863429.1|5025142_5026939_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA	NA
WP_169862912.1|5027145_5028039_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.7	4.0e-67
WP_169863430.1|5028146_5028581_-	DUF3597 domain-containing protein	NA	NA	NA	NA	NA
WP_169862914.1|5028706_5029279_+	DUF4142 domain-containing protein	NA	NA	NA	NA	NA
WP_169863431.1|5029521_5029749_-	response regulator	NA	NA	NA	NA	NA
WP_169862916.1|5030185_5030368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169862918.1|5030377_5031160_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_169862919.1|5031171_5032362_-	glutathione-dependent formaldehyde dehydrogenase	NA	E3SJ82	Synechococcus_phage	23.0	5.1e-09
WP_169862921.1|5032361_5032937_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_169862923.1|5033226_5033883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169862925.1|5033995_5034508_+	hemerythrin domain-containing protein	NA	NA	NA	NA	NA
WP_084491345.1|5034783_5035245_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_010336289.1|5035241_5035595_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_169863432.1|5035749_5037270_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	38.2	7.5e-82
WP_052076527.1|5037493_5038051_-	PRC-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_169863433.1|5038591_5039560_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_069338825.1|5040507_5041314_-	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	32.7	2.0e-33
WP_086485527.1|5041303_5042827_-|transposase	IS21 family transposase	transposase	NA	NA	NA	NA
5053770:5053786	attR	CAAGATCGGCCTGACCT	NA	NA	NA	NA
>prophage 1
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	0	3285	371560		uncultured_virus(100.0%)	1	NA	NA
WP_169863445.1|1620_3285_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	37.8	1.6e-56
>prophage 2
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	16894	151628	371560	integrase,transposase	Ochrobactrum_phage(13.04%)	110	64672:64687	97659:97672
WP_157228541.1|16894_17935_-|transposase	IS630 family transposase	transposase	NA	NA	NA	NA
WP_026109426.1|19060_20134_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_038292980.1|20150_21350_-	MFS transporter	NA	NA	NA	NA	NA
WP_017502354.1|21457_22381_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_069335654.1|22579_23695_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA	NA
WP_169863447.1|23724_24408_-	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
WP_169863499.1|24413_24923_-	SRPBCC domain-containing protein	NA	NA	NA	NA	NA
WP_017502358.1|25024_25978_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_026109429.1|26408_28028_+	glycosyl hydrolase 43 family protein	NA	NA	NA	NA	NA
WP_169863448.1|28051_29620_+	alpha-L-rhamnosidase	NA	NA	NA	NA	NA
WP_017503742.1|29616_30738_+	endo-1,4-beta-xylanase	NA	NA	NA	NA	NA
WP_169863500.1|30734_32324_-	glycoside hydrolase family 28 protein	NA	A0A0K1Y5U2	Streptomyces_phage	23.0	1.8e-06
WP_026109729.1|32389_35488_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	37.6	6.6e-16
WP_069335662.1|35681_36746_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	32.0	4.1e-34
WP_026109543.1|36846_37965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026109544.1|37975_39607_-	alkaline phosphatase D family protein	NA	NA	NA	NA	NA
WP_051035811.1|39677_42905_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_017502880.1|42988_43999_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_017502881.1|43967_44570_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_026109545.1|45074_45749_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_037522378.1|45874_46402_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_080727348.1|46364_46775_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_017502885.1|47347_47593_+	BrnT family toxin	NA	NA	NA	NA	NA
WP_017502886.1|47589_47877_+	BrnA antitoxin family protein	NA	A0A2H4J5Y5	uncultured_Caudovirales_phage	62.8	2.7e-09
WP_037522360.1|47974_49198_-	Fic family protein	NA	NA	NA	NA	NA
WP_080727349.1|49277_49595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017502892.1|50033_50237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_162181991.1|50555_51176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080727350.1|51127_51316_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_017502894.1|51430_52288_-	ATPase	NA	NA	NA	NA	NA
WP_169863449.1|52284_53982_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_017502157.1|53978_55130_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_125989612.1|55126_56149_-	SIS domain-containing protein	NA	F2Y1G4	Organic_Lake_phycodnavirus	28.3	1.7e-16
WP_017502155.1|56357_57248_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA	NA
WP_017502154.1|57254_57986_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_169863501.1|58100_59480_+	permease	NA	NA	NA	NA	NA
WP_017502152.1|59488_60505_+	serine hydrolase	NA	NA	NA	NA	NA
WP_169863502.1|60501_61626_-	serine hydrolase	NA	NA	NA	NA	NA
WP_037522368.1|61825_63268_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_155276512.1|63271_65545_-	penicillin acylase family protein	NA	NA	NA	NA	NA
64672:64687	attL	TGCGGCCAAAGGCGAA	NA	NA	NA	NA
WP_164522514.1|66058_68935_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	23.9	4.8e-21
64672:64687	attL	TGCGGCCAAAGGCGAA	NA	NA	NA	NA
WP_017502147.1|69174_70806_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_026109384.1|70972_71857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_017502145.1|71951_72989_+	DUF1611 domain-containing protein	NA	NA	NA	NA	NA
WP_017502144.1|72994_73987_+	dipeptide epimerase	NA	NA	NA	NA	NA
WP_169863450.1|73994_75236_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA	NA
WP_017502142.1|75405_75669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_037522387.1|75696_77205_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2I7R1N2	Vibrio_phage	23.5	8.4e-09
WP_157228533.1|77381_78386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017502139.1|80346_80775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017502138.1|80925_82056_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_026109382.1|82130_83204_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA	NA
WP_037522374.1|83200_84397_-	AAA family ATPase	NA	A0A240F4U1	Ochrobactrum_phage	32.1	5.2e-46
WP_125989602.1|84780_85173_+	hypothetical protein	NA	NA	NA	NA	NA
85115:85130	attR	TTCGCCTTTGGCCGCA	NA	NA	NA	NA
WP_017503622.1|85352_85772_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
85115:85130	attR	TTCGCCTTTGGCCGCA	NA	NA	NA	NA
WP_017503621.1|85828_87397_-|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	36.3	3.1e-83
WP_017503620.1|87464_87818_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_017503619.1|87814_88171_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_081600997.1|88310_88637_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_017503617.1|89033_89336_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_164522515.1|89562_90054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080727358.1|90164_90740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125989606.1|90736_91285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162181992.1|91910_94754_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_169863451.1|94756_95677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017503039.1|96984_97920_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_026109583.1|98033_98828_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA	NA
WP_026109582.1|98899_99196_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_017503036.1|99206_99383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169863452.1|99401_100142_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_017503034.1|100252_100546_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_169863453.1|100656_101067_+	heme-binding protein	NA	NA	NA	NA	NA
WP_026109581.1|101365_102505_+	glutathione-independent formaldehyde dehydrogenase	NA	E3SJ82	Synechococcus_phage	26.0	1.8e-08
WP_026109580.1|102536_103106_+	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	28.3	8.1e-13
WP_037522566.1|103362_105954_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.3	9.9e-159
WP_017503542.1|106592_107213_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_017503541.1|107326_107560_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_026109697.1|107556_108831_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_155276517.1|108907_109744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863454.1|110229_111753_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	27.9	3.6e-15
WP_169863455.1|111742_112549_+	ATP-binding protein	NA	A0A059NT77	Lactococcus_phage	32.7	2.6e-33
WP_017503349.1|115152_116136_+	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_051035837.1|116162_116435_+	5'-nucleotidase	NA	NA	NA	NA	NA
WP_026109656.1|116431_116809_+	5'-nucleotidase	NA	NA	NA	NA	NA
WP_169863456.1|117109_118594_-	DUF2779 domain-containing protein	NA	NA	NA	NA	NA
WP_169863457.1|118629_119148_-	WYL domain-containing protein	NA	NA	NA	NA	NA
WP_169863458.1|119168_121091_+	ATP-binding protein	NA	A0A0N7FZ09	Sulfolobales_virus	36.3	5.3e-08
WP_026109688.1|121087_121294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017503506.1|121447_122734_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_169863459.1|123951_124266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_026109686.1|126785_128204_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.7	1.9e-42
WP_004213249.1|128241_128571_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_014072602.1|128583_128979_-	mercury transporter MerT	NA	NA	NA	NA	NA
WP_014072603.1|129055_129478_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_017184234.1|129645_130206_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	79.3	6.0e-45
WP_169863460.1|130290_131370_-	Cj0069 family protein	NA	NA	NA	NA	NA
WP_017184236.1|131458_132127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017184237.1|132201_133599_-	chromate efflux transporter	NA	A0A219VHC2	Ochrobactrum_phage	90.9	2.2e-40
WP_025160483.1|133601_134552_-	chromate resistance protein	NA	A0A219VHC0	Ochrobactrum_phage	52.4	1.6e-26
WP_169863461.1|134720_135611_+	DUF1259 domain-containing protein	NA	NA	NA	NA	NA
WP_008603796.1|135724_136012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169863462.1|136740_137844_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_169863463.1|137920_140890_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	42.9	4.8e-226
WP_169863464.1|141019_141664_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	49.2	3.8e-35
WP_169863465.1|141705_142428_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_007686150.1|142547_143078_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_008832583.1|143074_143695_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	49.7	1.6e-38
WP_015063481.1|146783_147887_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_004212890.1|148380_149130_-	HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_004212886.1|149126_151628_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	41.0	7.7e-124
>prophage 3
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	164459	165020	371560		Salmonella_phage(100.0%)	1	NA	NA
WP_004213255.1|164459_165020_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	79.3	4.6e-45
>prophage 4
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	174390	174951	371560		Agrobacterium_phage(100.0%)	1	NA	NA
WP_169863477.1|174390_174951_+	hypothetical protein	NA	A0A2L0V0N3	Agrobacterium_phage	42.6	8.5e-07
>prophage 5
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	180404	188630	371560	transposase	Enterobacteria_phage(25.0%)	6	NA	NA
WP_026109404.1|180404_181010_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	46.6	2.7e-35
WP_007015768.1|181157_184091_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	35.1	1.4e-153
WP_125988681.1|184233_184572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026109405.1|184885_185272_-	MerR family DNA-binding protein	NA	NA	NA	NA	NA
WP_026109406.1|185268_187638_-	heavy metal translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	2.1e-75
WP_026109407.1|187742_188630_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2K9L4X0	Tupanvirus	29.3	5.6e-21
>prophage 6
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	198177	198624	371560		Klosneuvirus(100.0%)	1	NA	NA
WP_017502281.1|198177_198624_+	DUF305 domain-containing protein	NA	A0A1V0SJW0	Klosneuvirus	39.5	2.1e-08
>prophage 7
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	203240	206381	371560		Leptospira_phage(100.0%)	1	NA	NA
WP_017502289.1|203240_206381_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.1	2.1e-54
>prophage 8
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	209876	215012	371560		Synechococcus_phage(50.0%)	6	NA	NA
WP_004213019.1|209876_211787_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	I3ULH6	Synechococcus_phage	45.7	2.6e-07
WP_017503491.1|211786_212515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169863480.1|212511_213234_+	cytochrome C	NA	NA	NA	NA	NA
WP_004212663.1|213220_213664_+	DUF1622 domain-containing protein	NA	NA	NA	NA	NA
WP_026109687.1|213678_214119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004213020.1|214265_215012_-	HAD-IIB family hydrolase	NA	A0A2P1EM96	Moumouvirus	25.9	8.7e-07
>prophage 9
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	221482	222508	371560		Tupanvirus(100.0%)	1	NA	NA
WP_017501292.1|221482_222508_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	28.9	2.8e-32
>prophage 10
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	229294	231997	371560		Acinetobacter_phage(100.0%)	1	NA	NA
WP_169863482.1|229294_231997_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	24.4	1.8e-33
>prophage 11
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	236280	237816	371560		Catovirus(100.0%)	1	NA	NA
WP_026109205.1|236280_237816_-	PAS domain S-box protein	NA	A0A1V0S925	Catovirus	34.7	5.4e-11
>prophage 12
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	245130	247488	371560		uncultured_virus(100.0%)	1	NA	NA
WP_004206948.1|245130_247488_+	cadmium-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	34.1	7.1e-79
>prophage 13
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	264955	266494	371560		Geobacillus_virus(100.0%)	1	NA	NA
WP_004212749.1|264955_266494_-	thymidine phosphorylase family protein	NA	A0A0H3UZD4	Geobacillus_virus	23.7	1.2e-18
>prophage 14
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	270309	275021	371560	transposase	Lactobacillus_phage(33.33%)	6	NA	NA
WP_169863487.1|270309_271673_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	27.9	2.2e-08
WP_026109720.1|272739_273348_-	DUF4142 domain-containing protein	NA	NA	NA	NA	NA
WP_169863488.1|273383_273530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017503659.1|273778_274213_+	DUF488 domain-containing protein	NA	A0A1B3AYW8	Gordonia_phage	46.6	7.2e-22
WP_026109719.1|274378_274669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017503657.1|274769_275021_+	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	40.4	1.5e-08
>prophage 15
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	283404	295300	371560	transposase	Feldmannia_species_virus(20.0%)	10	NA	NA
WP_051886940.1|283404_286182_+	PAS domain-containing protein	NA	B5LWN8	Feldmannia_species_virus	22.9	1.5e-06
WP_026109522.1|286247_287636_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	30.7	3.9e-45
WP_155276485.1|287855_288128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017502770.1|288481_289294_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_037521885.1|289774_291187_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	22.4	1.8e-16
WP_017502773.1|291192_292569_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_017502774.1|292609_293368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017502775.1|293592_294255_+	sigma-70 family RNA polymerase sigma factor	NA	A0A076YQ50	Rhizobium_phage	29.9	1.7e-09
WP_017502776.1|294279_294651_-	response regulator	NA	NA	NA	NA	NA
WP_017502777.1|294763_295300_-	DUF882 domain-containing protein	NA	R9ZW03	Cellulophaga_phage	44.3	7.6e-05
>prophage 16
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	299194	301747	371560		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
WP_037521896.1|299194_301747_-	GAF domain-containing protein	NA	Q8QNA6	Ectocarpus_siliculosus_virus	32.4	8.3e-25
>prophage 17
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	305311	306991	371560		Acinetobacter_phage(50.0%)	2	NA	NA
WP_037521880.1|305311_305815_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	33.7	4.0e-16
WP_017503630.1|306160_306991_+	S1/P1 nuclease	NA	A4KXI8	Heliothis_virescens_ascovirus	27.7	3.4e-12
>prophage 18
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	313097	315611	371560		Sinorhizobium_phage(100.0%)	1	NA	NA
WP_037521876.1|313097_315611_+	DNA ligase D	NA	A0A291AUV6	Sinorhizobium_phage	40.4	9.0e-56
>prophage 19
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	331258	340061	371560	transposase	Enterobacteria_phage(33.33%)	7	NA	NA
WP_169863505.1|331258_332098_+	formate/nitrite transporter family protein	NA	E7DYY8	Enterobacteria_phage	38.3	6.1e-41
WP_080727379.1|332107_332827_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_037523133.1|333094_333304_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051887096.1|333380_335141_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	30.3	3.5e-14
WP_086027964.1|335226_335986_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_017503103.1|336392_336947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026109600.1|337916_340061_+	catalase	NA	A0A2K9L572	Tupanvirus	46.3	2.8e-130
>prophage 20
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	343708	344275	371560		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_017503096.1|343708_344275_+	type 1 glutamine amidotransferase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	44.4	3.3e-14
>prophage 21
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	353004	353898	371560		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_026109678.1|353004_353898_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	47.3	4.6e-63
>prophage 22
NZ_CP053022	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-A-Sy, complete sequence	371560	362207	364094	371560		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_017503637.1|362207_364094_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	33.3	7.6e-92
>prophage 1
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	0	6559	282770		Pseudomonas_phage(50.0%)	5	NA	NA
WP_048938898.1|1724_2390_+	DUF1275 family protein	NA	NA	NA	NA	NA
WP_048938899.1|2386_3286_+	fused MFS/spermidine synthase	NA	NA	NA	NA	NA
WP_066703735.1|3369_4221_+	toprim domain-containing protein	NA	A0A0H5AWB1	Pseudomonas_phage	26.3	5.2e-08
WP_048938901.1|4361_6041_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_048938902.1|6079_6559_-	MucR family transcriptional regulator	NA	A0A1P8VVG0	Erythrobacter_phage	52.4	1.7e-24
>prophage 2
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	13751	41116	282770	integrase	Brevibacillus_phage(10.0%)	30	8090:8106	39812:39828
8090:8106	attL	GCCGCCGGGCAGCGCGA	NA	NA	NA	NA
WP_169861176.1|13751_14756_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_008832422.1|14752_16108_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_008832423.1|16104_17337_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_036529396.1|17484_17793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099185517.1|17938_19486_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0K2CP59	Brevibacillus_phage	30.1	7.8e-10
WP_019053427.1|19479_20394_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_019053426.1|20390_21407_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	33.3	2.7e-11
WP_046765619.1|21396_22941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863507.1|22860_24714_+	strawberry notch C-terminal domain-containing protein	NA	A0A076FMQ0	Aureococcus_anophage	33.7	2.5e-15
WP_048939583.1|24688_24898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048939584.1|25008_25221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_107917700.1|25694_27857_+	ParB N-terminal domain-containing protein	NA	G8DH78	Emiliania_huxleyi_virus	30.7	1.9e-25
WP_048939586.1|27935_28871_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	52.1	1.3e-65
WP_048939587.1|28881_29199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048939588.1|29225_29837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041380157.1|29881_30082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048939589.1|30078_30594_+	thermonuclease family protein	NA	NA	NA	NA	NA
WP_048939590.1|30710_31739_+	hypothetical protein	NA	A0A2P1JZU1	Mycobacterium_phage	32.8	5.0e-13
WP_048939591.1|31784_32273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_048939592.1|32345_33059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863508.1|33235_33880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_066704209.1|33883_34063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863509.1|34167_35133_+	hypothetical protein	NA	G9BWC3	Planktothrix_phage	32.1	1.7e-23
WP_036529763.1|35242_35437_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048938258.1|35980_36553_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_048938257.1|36542_38750_-	catalase	NA	A0A2K9L0T1	Tupanvirus	50.0	2.0e-139
WP_048938256.1|38923_39415_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	34.4	1.1e-15
WP_066702628.1|39514_39877_-	hypothetical protein	NA	NA	NA	NA	NA
39812:39828	attR	GCCGCCGGGCAGCGCGA	NA	NA	NA	NA
WP_048938255.1|40059_40518_+	DUF736 domain-containing protein	NA	NA	NA	NA	NA
WP_048938254.1|40681_41116_+	antirestriction protein	NA	A0A1S5R3R9	Pseudomonas_phage	32.8	5.9e-08
>prophage 3
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	66720	76158	282770	integrase	Burkholderia_phage(25.0%)	7	NA	NA
WP_041380140.1|66720_67077_-	integration host factor subunit beta	NA	B5TA87	Burkholderia_phage	37.5	4.9e-08
WP_066702614.1|67199_68909_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_169863556.1|69280_71722_-	EAL domain-containing protein	NA	G3MA91	Bacillus_virus	32.1	1.5e-15
WP_066702607.1|71899_72919_+	2-hydroxyacid dehydrogenase	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	39.7	3.3e-57
WP_066702604.1|73030_74032_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_066702598.1|74032_74869_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_066702595.1|75219_76158_+	RNA polymerase sigma factor RpoH	NA	A0A1W6DY88	Aeromonas_phage	24.3	1.2e-05
>prophage 4
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	80028	85995	282770		Cyanophage(33.33%)	5	NA	NA
WP_008829907.1|80028_80505_+	Hsp20 family protein	NA	A0A0C5AE28	Cyanophage	43.7	8.5e-24
WP_066702638.1|80601_81114_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_066702591.1|81260_81719_+	ETC complex I subunit	NA	NA	NA	NA	NA
WP_169863557.1|81841_82519_+	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	32.8	3.0e-14
WP_066701793.1|82851_85995_-	response regulator	NA	A0A1V0SGX0	Hokovirus	27.1	1.3e-06
>prophage 5
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	93481	109254	282770		uncultured_virus(28.57%)	20	NA	NA
WP_008829923.1|93481_95101_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	60.8	3.1e-174
WP_008829924.1|95154_95469_-	co-chaperone GroES	NA	A0A221S4G8	uncultured_virus	55.4	2.2e-20
WP_008829925.1|95731_95968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169863515.1|95964_96234_+	protein usg	NA	NA	NA	NA	NA
WP_008829927.1|96230_96629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_036528742.1|96673_96904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_066701788.1|97032_97302_+	DUF1971 domain-containing protein	NA	NA	NA	NA	NA
WP_066701762.1|97356_98634_-	response regulator	NA	Q8QKW6	Ectocarpus_siliculosus_virus	22.9	4.6e-08
WP_169800216.1|98722_98992_-	PAS domain-containing protein	NA	NA	NA	NA	NA
WP_066701760.1|100020_100971_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2I2L5E1	Orpheovirus	26.3	4.5e-16
WP_066701758.1|101004_101268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_066701756.1|101371_101560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_066701755.1|101769_102102_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_066701754.1|102193_102973_-	transglutaminase family protein	NA	NA	NA	NA	NA
WP_066701752.1|103128_104634_+	ubiquinone biosynthesis protein	NA	A0A0R6PKQ6	Moraxella_phage	29.1	6.6e-38
WP_011950649.1|105201_105510_-	alkylphosphonate utilization protein	NA	NA	NA	NA	NA
WP_008829942.1|105524_105848_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_048938212.1|105945_107553_+	phosphoenolpyruvate carboxykinase	NA	A0A2H4PQN1	Staphylococcus_phage	49.1	8.3e-140
WP_048938211.1|107611_108031_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_066701786.1|109017_109254_+	acyl carrier protein	NA	A0A1P8VVJ5	Erythrobacter_phage	45.9	2.2e-09
>prophage 6
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	132688	133684	282770		Geobacillus_virus(100.0%)	1	NA	NA
WP_066701710.1|132688_133684_-	lytic transglycosylase domain-containing protein	NA	A0A0H3V0Q1	Geobacillus_virus	50.4	5.0e-18
>prophage 7
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	147160	150066	282770		uncultured_Caudovirales_phage(66.67%)	4	NA	NA
WP_169863529.1|147160_147364_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	36.9	3.4e-06
WP_169863530.1|147378_147744_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA	NA
WP_169863531.1|147718_148570_-	universal stress protein	NA	A0A2H4J154	uncultured_Caudovirales_phage	43.0	6.3e-54
WP_169863532.1|148581_150066_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	63.5	6.1e-169
>prophage 8
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	156476	157268	282770		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_169863537.1|156476_157268_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	25.7	5.2e-10
>prophage 9
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	162250	162871	282770		Burkholderia_phage(100.0%)	1	NA	NA
WP_008832583.1|162250_162871_-	recombinase family protein	NA	E5FFF9	Burkholderia_phage	49.7	1.6e-38
>prophage 10
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	167750	168515	282770	transposase	Escherichia_phage(100.0%)	1	NA	NA
WP_001389365.1|167750_168515_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
>prophage 11
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	172745	187081	282770	transposase	Ochrobactrum_phage(25.0%)	14	NA	NA
WP_169863542.1|172745_173552_+	SDR family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	29.1	8.2e-19
WP_010408980.1|173551_174355_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_169863543.1|174533_176246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001389365.1|176544_177309_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_017184234.1|177622_178183_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	79.3	6.0e-45
WP_062770847.1|178267_179257_-	Cj0069 family protein	NA	NA	NA	NA	NA
WP_017184236.1|179435_180104_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017184237.1|180178_181576_-	chromate efflux transporter	NA	A0A219VHC2	Ochrobactrum_phage	90.9	2.2e-40
WP_025160483.1|181578_182529_-	chromate resistance protein	NA	A0A219VHC0	Ochrobactrum_phage	52.4	1.6e-26
WP_042490969.1|182697_183588_+	DUF1259 domain-containing protein	NA	NA	NA	NA	NA
WP_008603796.1|183701_183989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017980875.1|184878_185253_+	DUF3768 domain-containing protein	NA	L7TKV8	Rhizobium_phage	41.9	1.9e-10
WP_017980876.1|185312_185588_+	hypothetical protein	NA	A0A2I7S8R6	Vibrio_phage	55.1	5.4e-07
WP_026151882.1|185653_187081_+	DUF4942 domain-containing protein	NA	A0A1I9KFG8	Aeromonas_phage	43.4	2.5e-26
>prophage 12
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	190082	190718	282770		Microbacterium_phage(100.0%)	1	NA	NA
WP_017980880.1|190082_190718_+	hypothetical protein	NA	A0A2R3ZZK1	Microbacterium_phage	48.6	4.6e-25
>prophage 13
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	193775	194702	282770		Caulobacter_phage(100.0%)	1	NA	NA
WP_017980884.1|193775_194702_+	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	43.5	2.2e-60
>prophage 14
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	197884	204000	282770		Enterobacteria_phage(20.0%)	10	NA	NA
WP_017980890.1|197884_198262_+	hypothetical protein	NA	Q1MVE8	Enterobacteria_phage	57.4	5.5e-34
WP_017980891.1|198292_199555_-	Y-family DNA polymerase	NA	A0A1W6JNT0	Morganella_phage	38.0	1.3e-71
WP_169863545.1|199564_200002_-	peptidase	NA	A0A2H4J538	uncultured_Caudovirales_phage	35.0	4.7e-13
WP_017980893.1|200106_200397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017980894.1|200397_200595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017980895.1|200830_201094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017980896.1|201105_201495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017980898.1|201839_202472_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	46.2	3.1e-37
WP_017980899.1|202739_203075_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_017980900.1|203316_204000_+	ParA family protein	NA	A0A0A8IL09	Aurantimonas_phage	43.8	1.6e-39
>prophage 15
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	208717	208981	282770		Cronobacter_phage(100.0%)	1	NA	NA
WP_024310576.1|208717_208981_-	DksA/TraR family C4-type zinc finger protein	NA	K4F9U1	Cronobacter_phage	49.4	7.5e-14
>prophage 16
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	217086	218196	282770		Synechococcus_phage(100.0%)	1	NA	NA
WP_017980840.1|217086_218196_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.6	5.0e-35
>prophage 17
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	222357	271414	282770	integrase,bacteriocin,transposase	Escherichia_phage(33.33%)	42	259096:259110	281400:281414
WP_017980845.1|222357_224334_+	excinuclease ABC subunit UvrB	NA	A7WKN6	Acidianus_filamentous_virus	32.5	9.7e-05
WP_017980846.1|224356_227011_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	33.5	1.3e-161
WP_026151879.1|227155_228241_+	Dyp-type peroxidase	NA	S4VXK8	Pandoravirus	29.3	8.7e-24
WP_017980848.1|228233_229055_+|bacteriocin	bacteriocin family protein	bacteriocin	NA	NA	NA	NA
WP_017980849.1|229107_229689_+	PRC-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_021233331.1|229700_229997_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_021233332.1|229993_230272_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_169863547.1|230388_231198_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_017980864.1|231378_231732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024310572.1|231728_232532_-	muramidase	NA	NA	NA	NA	NA
WP_160172105.1|233264_233549_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_017980866.1|233701_233974_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_120694215.1|234131_234566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_017980869.1|234693_235554_+	replication initiator protein A	NA	A0A0K1Y6J9	Rhodobacter_phage	32.3	9.9e-31
WP_017980870.1|236000_237044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_051066275.1|237521_238205_+	toprim domain-containing protein	NA	NA	NA	NA	NA
WP_052018352.1|238378_238852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020486683.1|238903_239236_+	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_001389365.1|242488_243253_+|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_011607945.1|244353_245169_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_011607944.1|245251_246142_-	catechol 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_032073059.1|246167_246458_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_032073060.1|246459_247617_-	muconate cycloisomerase family protein	NA	Q6A202	Oenococcus_phage	25.3	3.8e-09
WP_169863548.1|247734_248616_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	28.3	5.2e-11
WP_052730297.1|248619_249348_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_011607939.1|249500_250187_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_011607938.1|250204_250858_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_011607937.1|250857_252066_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_001389365.1|252304_253069_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_169863549.1|254881_255997_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_169863550.1|256234_256930_+	phosphatase PAP2 family protein	NA	A0A1B1IUP6	uncultured_Mediterranean_phage	35.6	1.5e-05
WP_169863551.1|257105_258317_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	51.8	1.9e-104
WP_169863552.1|258315_258750_+	heme-binding protein	NA	NA	NA	NA	NA
259096:259110	attL	CAGCCACATCGACAT	NA	NA	NA	NA
WP_037523462.1|261989_262901_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_037523465.1|262952_263699_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_030540715.1|263848_265402_+	Pyoverdin chromophore biosynthetic protein pvcC	NA	NA	NA	NA	NA
WP_030540716.1|265468_266092_+	FAD synthetase family protein	NA	NA	NA	NA	NA
WP_037523468.1|266084_266564_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_001389365.1|266936_267701_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
WP_169863553.1|267771_268170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095687479.1|268511_269435_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	49.4	2.5e-32
WP_017181641.1|270262_271414_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
281400:281414	attR	ATGTCGATGTGGCTG	NA	NA	NA	NA
>prophage 18
NZ_CP053023	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-B-Sy, complete sequence	282770	277393	278080	282770		Aurantimonas_phage(100.0%)	1	NA	NA
WP_008829214.1|277393_278080_+	ParA family protein	NA	A0A0A8IL09	Aurantimonas_phage	31.1	7.7e-18
>prophage 1
NZ_CP053024	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence	57270	0	3901	57270		Pseudomonas_phage(100.0%)	4	NA	NA
WP_169863562.1|2371_2668_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_169863595.1|2664_2946_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA	NA
WP_159368306.1|3264_3450_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_169863563.1|3478_3901_-	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	37.3	6.4e-07
>prophage 2
NZ_CP053024	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence	57270	7075	10342	57270	transposase	Streptococcus_phage(33.33%)	4	NA	NA
WP_010338606.1|7075_8110_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	33.6	1.1e-07
WP_159368296.1|8431_9067_+	AAA family ATPase	NA	A4JWV7	Burkholderia_virus	52.6	5.2e-45
WP_169863564.1|9092_9374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159368298.1|9430_10342_-	RepB family plasmid replication initiator protein	NA	A0A1V0E006	Clostridioides_phage	32.3	4.0e-06
>prophage 3
NZ_CP053024	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence	57270	14486	17642	57270		Mycobacterium_phage(100.0%)	1	NA	NA
WP_169863566.1|14486_17642_+	Ti-type conjugative transfer relaxase TraA	NA	V5UQN3	Mycobacterium_phage	27.1	7.4e-15
>prophage 4
NZ_CP053024	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence	57270	23311	23932	57270		Burkholderia_phage(100.0%)	1	NA	NA
WP_008832583.1|23311_23932_+	recombinase family protein	NA	E5FFF9	Burkholderia_phage	49.7	1.6e-38
>prophage 5
NZ_CP053024	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence	57270	30281	39384	57270		Salmonella_phage(33.33%)	8	NA	NA
WP_169863596.1|30281_30842_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	79.5	1.6e-45
WP_169863575.1|30856_32194_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_169863576.1|32226_32535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863577.1|32531_33788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863578.1|33787_35992_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	31.2	4.2e-17
WP_169863597.1|36005_36716_-	polysaccharide export protein	NA	NA	NA	NA	NA
WP_169863579.1|36768_38139_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_169863580.1|38139_39384_-	DegT/DnrJ/EryC1/StrS aminotransferase family protein	NA	A0A2K9L0G1	Tupanvirus	45.7	2.7e-98
>prophage 6
NZ_CP053024	Sphingobium yanoikuyae strain YC-XJ2 plasmid p-C-Sy, complete sequence	57270	46770	55129	57270		Paramecium_bursaria_Chlorella_virus(40.0%)	7	NA	NA
WP_169863588.1|46770_48069_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	M1HZB2	Paramecium_bursaria_Chlorella_virus	24.3	3.8e-10
WP_169863589.1|48070_49105_-	GDP-mannose 4,6-dehydratase	NA	K7QJG5	Escherichia_phage	33.3	5.7e-25
WP_169863598.1|49142_51041_-	polysaccharide biosynthesis protein	NA	K7Y9E1	Megavirus	26.0	4.7e-17
WP_169863590.1|51169_52993_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	40.7	3.4e-113
WP_169863591.1|53057_53378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863592.1|53988_54240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169863599.1|54331_55129_-	serine/threonine protein phosphatase	NA	K4JTY8	Caulobacter_virus	35.9	2.5e-28
