assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012974565.1_ASM1297456v1	NZ_CP048920	Escherichia coli strain SCU-101 chromosome, complete genome	1	1885016-1885129	1	CRISPRCasFinder	no		RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	NA,NA	NA|268aa|up_9|NZ_CP048920.1_1873960_1874764_+	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	NA|309aa|up_8|NZ_CP048920.1_1874804_1875731_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP048920.1_1875923_1877114_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP048920.1_1877110_1878370_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP048920.1_1878359_1879988_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP048920.1_1880260_1881619_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP048920.1_1881623_1882700_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP048920.1_1882902_1883553_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP048920.1_1883606_1883861_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP048920.1_1883860_1884991_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP048920.1_1885180_1887466_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP048920.1_1888147_1891906_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP048920.1_1892045_1892768_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP048920.1_1892914_1895542_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP048920.1_1895690_1897379_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP048920.1_1897375_1897999_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP048920.1_1898142_1902537_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP048920.1_1902537_1904187_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP048920.1_1904191_1904968_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP048920.1_1905041_1906226_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_012974565.1_ASM1297456v1	NZ_CP048920	Escherichia coli strain SCU-101 chromosome, complete genome	2	2603055-2603178	2	CRISPRCasFinder	no	DEDDh	RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	NA,NA|30aa|down_7|NZ_CP048920.1_2612074_2612164_+	NA|79aa|up_9|NZ_CP048920.1_2591960_2592197_-	PRK15396, PRK15396, major outer membrane lipoprotein	NA|471aa|up_8|NZ_CP048920.1_2592507_2593920_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_7|NZ_CP048920.1_2594477_2594687_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_6|NZ_CP048920.1_2595142_2595769_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_5|NZ_CP048920.1_2595789_2597892_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_4|NZ_CP048920.1_2597904_2598543_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_3|NZ_CP048920.1_2598606_2599275_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_2|NZ_CP048920.1_2599271_2600057_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_1|NZ_CP048920.1_2600060_2600873_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|102aa|up_0|NZ_CP048920.1_2602613_2602919_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP048920.1_2603492_2604749_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP048920.1_2604789_2606163_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP048920.1_2606377_2607019_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP048920.1_2607058_2608207_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP048920.1_2608497_2609709_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP048920.1_2609821_2610754_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP048920.1_2610750_2611776_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP048920.1_2612074_2612164_+	NA	NA|390aa|down_8|NZ_CP048920.1_2612329_2613499_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP048920.1_2613644_2614226_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012974565.1_ASM1297456v1	NZ_CP048920	Escherichia coli strain SCU-101 chromosome, complete genome	3	3151501-3151613	1	PILER-CR	no		RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	Orphan	TTTTCTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	NA|47aa|up_7|NZ_CP048920.1_3147770_3147911_-,NA|126aa|up_2|NZ_CP048920.1_3149442_3149820_+,NA|143aa|up_1|NZ_CP048920.1_3149816_3150245_+,NA|354aa|down_3|NZ_CP048920.1_3153730_3154792_+	NA|361aa|up_9|NZ_CP048920.1_3146030_3147113_+	PRK10554, PRK10554, outer membrane porin protein C; Provisional	NA|128aa|up_8|NZ_CP048920.1_3147301_3147685_-	pfam06530, Phage_antitermQ, Phage antitermination protein Q	NA|47aa|up_7|NZ_CP048920.1_3147770_3147911_-	NA	NA|121aa|up_6|NZ_CP048920.1_3147907_3148270_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_5|NZ_CP048920.1_3148266_3148557_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_4|NZ_CP048920.1_3148549_3148720_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_3|NZ_CP048920.1_3148719_3149175_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|126aa|up_2|NZ_CP048920.1_3149442_3149820_+	NA	NA|143aa|up_1|NZ_CP048920.1_3149816_3150245_+	NA	NA|238aa|up_0|NZ_CP048920.1_3150323_3151037_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP048920.1_3152049_3152589_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|76aa|down_1|NZ_CP048920.1_3152619_3152847_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|231aa|down_2|NZ_CP048920.1_3152957_3153650_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|354aa|down_3|NZ_CP048920.1_3153730_3154792_+	NA	NA|126aa|down_4|NZ_CP048920.1_3154769_3155147_+	COG4933, COG4933, Uncharacterized conserved protein [Function unknown]	NA|69aa|down_5|NZ_CP048920.1_3155622_3155829_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_6|NZ_CP048920.1_3155903_3156200_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_7|NZ_CP048920.1_3156205_3156991_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_8|NZ_CP048920.1_3156987_3157668_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_9|NZ_CP048920.1_3157664_3157847_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)
GCF_012974565.1_ASM1297456v1	NZ_CP048920	Escherichia coli strain SCU-101 chromosome, complete genome	4	3394075-3394166	3	CRISPRCasFinder	no		RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	NA|70aa|up_9|NZ_CP048920.1_3383325_3383535_-,NA	NA|70aa|up_9|NZ_CP048920.1_3383325_3383535_-	NA	NA|1321aa|up_8|NZ_CP048920.1_3383589_3387552_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP048920.1_3387591_3388230_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP048920.1_3388517_3389609_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP048920.1_3389608_3390301_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP048920.1_3390312_3390699_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP048920.1_3390706_3391507_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP048920.1_3391516_3392107_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP048920.1_3392117_3392612_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP048920.1_3392632_3393961_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP048920.1_3394589_3395186_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP048920.1_3395206_3395434_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP048920.1_3395471_3396713_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP048920.1_3397247_3398168_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP048920.1_3398167_3398473_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP048920.1_3398828_3399428_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP048920.1_3399424_3401971_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP048920.1_3401970_3403143_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP048920.1_3403272_3403965_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP048920.1_3403937_3404966_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_012974565.1_ASM1297456v1	NZ_CP048920	Escherichia coli strain SCU-101 chromosome, complete genome	5	4625931-4626070	4	CRISPRCasFinder	no		RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	RT,WYL,DEDDh,cas3,c2c9_V-U4,csa3,DinG,cas14j	NA,NA	NA|340aa|up_9|NZ_CP048920.1_4614141_4615161_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP048920.1_4615164_4615728_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP048920.1_4615944_4616976_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP048920.1_4616999_4617764_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP048920.1_4617828_4619148_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP048920.1_4619214_4620213_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP048920.1_4620290_4621793_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP048920.1_4621953_4623036_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP048920.1_4623035_4624136_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP048920.1_4624402_4625914_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP048920.1_4626171_4626615_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP048920.1_4626614_4629470_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP048920.1_4629516_4630704_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP048920.1_4630896_4631400_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP048920.1_4631577_4631994_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP048920.1_4632155_4633160_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP048920.1_4633204_4633657_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP048920.1_4634334_4635555_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP048920.1_4635565_4636498_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP048920.1_4636521_4637526_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
