assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	1	820539-820695	1	PILER-CR	no		csa3,RT,cas3,DEDDh,DinG	Orphan	GGCATCTGCCCGTGCGTGTGCCTGTCCCCGCTGGGACAGGCACATTGCCGTA	52	1	2	820653-820676|820653-820676	NZ_CP052850.1_820515-820538|NZ_CP052850.1_820725-820748	NA	2	2	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|188aa|up_9|NZ_CP052850.1_807716_808280_+	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|141aa|up_8|NZ_CP052850.1_808287_808710_-	cd08355, TioX_like, Micromonospora sp	NA|140aa|up_7|NZ_CP052850.1_808737_809157_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|173aa|up_6|NZ_CP052850.1_809185_809704_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|757aa|up_5|NZ_CP052850.1_810408_812679_+	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|411aa|up_4|NZ_CP052850.1_812727_813960_+	pfam03486, HI0933_like, HI0933-like protein	NA|212aa|up_3|NZ_CP052850.1_814062_814698_+	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|367aa|up_2|NZ_CP052850.1_815987_817088_+	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT	NA|125aa|up_1|NZ_CP052850.1_817169_817544_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|955aa|up_0|NZ_CP052850.1_817603_820468_+	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase	NA|247aa|down_0|NZ_CP052850.1_820927_821668_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|404aa|down_1|NZ_CP052850.1_821737_822949_+	pfam02515, CoA_transf_3, CoA-transferase family III	NA|323aa|down_2|NZ_CP052850.1_822977_823946_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|278aa|down_3|NZ_CP052850.1_823942_824776_+	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily	NA|675aa|down_4|NZ_CP052850.1_824826_826851_-	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|483aa|down_5|NZ_CP052850.1_826978_828427_-	pfam06097, DUF945, Bacterial protein of unknown function (DUF945)	NA|492aa|down_6|NZ_CP052850.1_828602_830078_-	pfam07364, DUF1485, Metallopeptidase family M81	NA|553aa|down_7|NZ_CP052850.1_830121_831780_-	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|300aa|down_8|NZ_CP052850.1_831783_832683_-	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|314aa|down_9|NZ_CP052850.1_832685_833627_-	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	2	1050488-1050574	1	CRISPRCasFinder	no	csa3	csa3,RT,cas3,DEDDh,DinG	Type I-A	CGTGGTGCCTGTCCCCGCGGGGAC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA|72aa|down_3|NZ_CP052850.1_1054880_1055096_-	NA|263aa|up_9|NZ_CP052850.1_1030507_1031296_-	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|145aa|up_8|NZ_CP052850.1_1032418_1032853_-	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria	NA|309aa|up_7|NZ_CP052850.1_1033911_1034838_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|123aa|up_6|NZ_CP052850.1_1035124_1035493_+	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only]	NA|832aa|up_5|NZ_CP052850.1_1035592_1038088_+	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|231aa|up_4|NZ_CP052850.1_1038136_1038829_+	PRK10119, PRK10119, putative hydrolase; Provisional	NA|209aa|up_3|NZ_CP052850.1_1040283_1040910_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|659aa|up_2|NZ_CP052850.1_1040958_1042935_-	pfam16448, LapD_MoxY_N, LapD/MoxY periplasmic domain	NA|228aa|up_1|NZ_CP052850.1_1042950_1043634_-	COG3672, COG3672, Predicted transglutaminase-like cysteine proteinase [General    function prediction only]	NA|2216aa|up_0|NZ_CP052850.1_1043714_1050362_-	NF012211, tand_rpt_95, tandem-95 repeat protein	NA|222aa|down_0|NZ_CP052850.1_1050596_1051262_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|481aa|down_1|NZ_CP052850.1_1051283_1052726_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|725aa|down_2|NZ_CP052850.1_1052728_1054903_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|72aa|down_3|NZ_CP052850.1_1054880_1055096_-	NA	NA|490aa|down_4|NZ_CP052850.1_1055106_1056576_-	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|431aa|down_5|NZ_CP052850.1_1056927_1058220_-	TIGR03862, flavo_PP4765, uncharacterized flavoprotein, PP_4765 family	csa3|109aa|down_6|NZ_CP052850.1_1058372_1058699_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|427aa|down_7|NZ_CP052850.1_1058695_1059976_+	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|322aa|down_8|NZ_CP052850.1_1060016_1060982_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|379aa|down_9|NZ_CP052850.1_1061025_1062162_-	pfam02515, CoA_transf_3, CoA-transferase family III
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	3	2466965-2467051	2	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACACT	25	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|201aa|up_9|NZ_CP052850.1_2454808_2455411_+	smart01103, CRS1_YhbY, Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly	NA|317aa|up_8|NZ_CP052850.1_2455550_2456501_+	pfam13011, LZ_Tnp_IS481, leucine-zipper of insertion element IS481	NA|159aa|up_7|NZ_CP052850.1_2456802_2457279_-	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|546aa|up_6|NZ_CP052850.1_2457902_2459540_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|438aa|up_5|NZ_CP052850.1_2459570_2460884_-	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|440aa|up_4|NZ_CP052850.1_2461143_2462463_+	cd13518, PBP2_Fe3_thiamine_like, Substrate binding domain of iron and thiamine transporters-like, a member of the type 2 periplasmic binding fold superfamily	NA|570aa|up_3|NZ_CP052850.1_2462539_2464249_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|362aa|up_2|NZ_CP052850.1_2464245_2465331_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|300aa|up_1|NZ_CP052850.1_2465378_2466278_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|up_0|NZ_CP052850.1_2466288_2466933_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|255aa|down_0|NZ_CP052850.1_2467113_2467878_-	PRK07024, PRK07024, SDR family oxidoreductase	NA|407aa|down_1|NZ_CP052850.1_2468059_2469280_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1077aa|down_2|NZ_CP052850.1_2469400_2472631_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|276aa|down_3|NZ_CP052850.1_2472912_2473740_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|232aa|down_4|NZ_CP052850.1_2473773_2474469_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|427aa|down_5|NZ_CP052850.1_2474461_2475742_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|326aa|down_6|NZ_CP052850.1_2475751_2476729_+	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown]	NA|567aa|down_7|NZ_CP052850.1_2476710_2478411_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|368aa|down_8|NZ_CP052850.1_2478513_2479618_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|252aa|down_9|NZ_CP052850.1_2479647_2480403_+	PRK07023, PRK07023, SDR family oxidoreductase
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	4	2768207-2768280	3	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	GGCGCCTGTCCCGGCGGGGACAG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA|237aa|up_0|NZ_CP052850.1_2767342_2768053_-,NA	NA|221aa|up_9|NZ_CP052850.1_2758130_2758793_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|496aa|up_8|NZ_CP052850.1_2758803_2760291_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|48aa|up_7|NZ_CP052850.1_2760415_2760559_-	pfam03597, FixS, Cytochrome oxidase maturation protein cbb3-type	NA|425aa|up_6|NZ_CP052850.1_2761594_2762869_-	PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional	NA|398aa|up_5|NZ_CP052850.1_2762972_2764166_+	TIGR00858, Putative_8-amino-7-oxononanoate_synthase, 8-amino-7-oxononanoate synthase	NA|218aa|up_4|NZ_CP052850.1_2764162_2764816_+	TIGR01738, Pimeloyl-_methyl_ester_esterase, pimelyl-[acyl-carrier protein] methyl ester esterase	NA|479aa|up_3|NZ_CP052850.1_2764812_2766249_+	pfam13500, AAA_26, AAA domain	NA|120aa|up_2|NZ_CP052850.1_2766236_2766596_+	pfam03788, LrgA, LrgA family	NA|248aa|up_1|NZ_CP052850.1_2766588_2767332_+	pfam04172, LrgB, LrgB-like family	NA|237aa|up_0|NZ_CP052850.1_2767342_2768053_-	NA	NA|441aa|down_0|NZ_CP052850.1_2768428_2769751_-	PRK15063, PRK15063, isocitrate lyase; Provisional	NA|274aa|down_1|NZ_CP052850.1_2770069_2770891_+	PRK11792, queF, 7-cyano-7-deazaguanine reductase; Provisional	NA|418aa|down_2|NZ_CP052850.1_2770897_2772151_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|191aa|down_3|NZ_CP052850.1_2772314_2772887_-	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|610aa|down_4|NZ_CP052850.1_2772926_2774756_-	PRK00558, uvrC, excinuclease ABC subunit UvrC	NA|354aa|down_5|NZ_CP052850.1_2774718_2775780_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|154aa|down_6|NZ_CP052850.1_2775818_2776280_-	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional	NA|249aa|down_7|NZ_CP052850.1_2776364_2777111_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|500aa|down_8|NZ_CP052850.1_2777107_2778607_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|415aa|down_9|NZ_CP052850.1_2781881_2783126_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	5	3079944-3080018	4	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	TGCCTGTCCCCGCGGGGACAGGC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|230aa|up_9|NZ_CP052850.1_3066946_3067636_-	PRK12700, flgH, flagellar basal body L-ring protein; Reviewed	NA|255aa|up_8|NZ_CP052850.1_3068464_3069229_-	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|474aa|up_7|NZ_CP052850.1_3069267_3070689_-	PRK12637, flgE, flagellar hook protein FlgE; Provisional	NA|235aa|up_6|NZ_CP052850.1_3070754_3071459_-	PRK12633, flgD, flagellar basal body rod modification protein; Provisional	NA|140aa|up_5|NZ_CP052850.1_3071506_3071926_-	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|136aa|up_4|NZ_CP052850.1_3071938_3072346_-	PRK05680, flgB, flagellar basal body rod protein FlgB; Reviewed	NA|237aa|up_3|NZ_CP052850.1_3072529_3073240_+	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA	NA|97aa|up_2|NZ_CP052850.1_3073366_3073657_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|161aa|up_1|NZ_CP052850.1_3073673_3074156_+	pfam05130, FlgN, FlgN protein	NA|385aa|up_0|NZ_CP052850.1_3078649_3079804_-	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|211aa|down_0|NZ_CP052850.1_3080030_3080663_-	PRK11166, PRK11166, chemotaxis regulator CheZ; Provisional	NA|130aa|down_1|NZ_CP052850.1_3080671_3081061_-	PRK10610, PRK10610, chemotaxis protein CheY	NA|351aa|down_2|NZ_CP052850.1_3081113_3082166_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|287aa|down_3|NZ_CP052850.1_3082162_3083023_-	PRK10611, PRK10611, protein-glutamate O-methyltransferase CheR	NA|569aa|down_4|NZ_CP052850.1_3083031_3084738_-	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional	NA|167aa|down_5|NZ_CP052850.1_3084811_3085312_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|686aa|down_6|NZ_CP052850.1_3085326_3087384_-	PRK10547, PRK10547, chemotaxis protein CheA; Provisional	NA|127aa|down_7|NZ_CP052850.1_3087410_3087791_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|316aa|down_8|NZ_CP052850.1_3087805_3088753_-	PRK09041, motB, motility protein MotB	NA|292aa|down_9|NZ_CP052850.1_3088765_3089641_-	PRK09110, PRK09110, flagellar motor stator protein MotA
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	6	3765577-3765658	5	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	CTGTCCCCGCCGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA|125aa|up_1|NZ_CP052850.1_3762017_3762392_-,NA|81aa|down_4|NZ_CP052850.1_3769999_3770242_-	NA|321aa|up_9|NZ_CP052850.1_3755336_3756299_-	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins	NA|419aa|up_8|NZ_CP052850.1_3756516_3757773_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|142aa|up_7|NZ_CP052850.1_3757975_3758401_+	pfam08897, DUF1841, Domain of unknown function (DUF1841)	NA|121aa|up_6|NZ_CP052850.1_3758451_3758814_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|118aa|up_5|NZ_CP052850.1_3758826_3759180_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|296aa|up_4|NZ_CP052850.1_3759340_3760228_+	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|391aa|up_3|NZ_CP052850.1_3760249_3761422_+	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown]	NA|185aa|up_2|NZ_CP052850.1_3761425_3761980_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|125aa|up_1|NZ_CP052850.1_3762017_3762392_-	NA	NA|917aa|up_0|NZ_CP052850.1_3762724_3765475_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|378aa|down_0|NZ_CP052850.1_3765665_3766799_-	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|642aa|down_1|NZ_CP052850.1_3766899_3768825_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|127aa|down_2|NZ_CP052850.1_3768915_3769296_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|185aa|down_3|NZ_CP052850.1_3769303_3769858_-	PRK14139, PRK14139, heat shock protein GrpE; Provisional	NA|81aa|down_4|NZ_CP052850.1_3769999_3770242_-	NA	NA|363aa|down_5|NZ_CP052850.1_3770323_3771412_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|335aa|down_6|NZ_CP052850.1_3771469_3772474_-	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|300aa|down_7|NZ_CP052850.1_3772588_3773488_+	PRK02155, ppnK, NAD kinase	NA|554aa|down_8|NZ_CP052850.1_3773503_3775165_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|407aa|down_9|NZ_CP052850.1_3775197_3776418_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	7	3918602-3918686	6	CRISPRCasFinder	no		csa3,RT,cas3,DEDDh,DinG	Orphan	CTGTCCCCGCGGGGACAGGCACC	23	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|585aa|up_9|NZ_CP052850.1_3906562_3908317_-	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism]	NA|299aa|up_8|NZ_CP052850.1_3908423_3909320_+	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold	NA|328aa|up_7|NZ_CP052850.1_3909384_3910368_-	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|327aa|up_6|NZ_CP052850.1_3910503_3911484_+	COG0679, COG0679, Predicted permeases [General function prediction only]	NA|464aa|up_5|NZ_CP052850.1_3911500_3912892_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|179aa|up_4|NZ_CP052850.1_3913043_3913580_+	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only]	NA|462aa|up_3|NZ_CP052850.1_3913510_3914896_+	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA	NA|213aa|up_2|NZ_CP052850.1_3915038_3915677_-	PRK10847, PRK10847, DedA family protein	NA|630aa|up_1|NZ_CP052850.1_3915763_3917653_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|314aa|up_0|NZ_CP052850.1_3917649_3918591_+	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed	NA|350aa|down_0|NZ_CP052850.1_3918696_3919746_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_1|NZ_CP052850.1_3919998_3920700_+	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated	NA|233aa|down_2|NZ_CP052850.1_3920696_3921395_+	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C	NA|452aa|down_3|NZ_CP052850.1_3921395_3922751_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|down_4|NZ_CP052850.1_3922747_3923239_+	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase	NA|319aa|down_5|NZ_CP052850.1_3923257_3924214_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|465aa|down_6|NZ_CP052850.1_3924240_3925635_-	pfam03972, MmgE_PrpD, MmgE/PrpD family	NA|701aa|down_7|NZ_CP052850.1_3925631_3927734_-	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit	NA|347aa|down_8|NZ_CP052850.1_3927904_3928945_+	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold	NA|248aa|down_9|NZ_CP052850.1_3928988_3929732_+	COG1802, GntR, Transcriptional regulators [Transcription]
GCF_012974185.1_ASM1297418v1	NZ_CP052850	Bordetella parapertussis strain J778 chromosome, complete genome	8	4129294-4129387	7	CRISPRCasFinder	no	DEDDh	csa3,RT,cas3,DEDDh,DinG	Unclear	GTGCCTGTCCCCGCCGGGACAGGCAC	26	0	0	NA	NA	NA	1	1	Orphan	csa3,RT,cas3,DEDDh,DinG	NA,NA	NA|398aa|up_9|NZ_CP052850.1_4117719_4118913_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase	NA|343aa|up_8|NZ_CP052850.1_4118978_4120007_-	pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain	NA|391aa|up_7|NZ_CP052850.1_4120033_4121206_-	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26	NA|306aa|up_6|NZ_CP052850.1_4121391_4122309_+	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold	NA|324aa|up_5|NZ_CP052850.1_4122319_4123291_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|262aa|up_4|NZ_CP052850.1_4123357_4124143_-	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein	NA|410aa|up_3|NZ_CP052850.1_4124139_4125369_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|252aa|up_2|NZ_CP052850.1_4125564_4126320_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|173aa|up_1|NZ_CP052850.1_4126430_4126949_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|706aa|up_0|NZ_CP052850.1_4126945_4129063_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|407aa|down_0|NZ_CP052850.1_4129424_4130645_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|157aa|down_1|NZ_CP052850.1_4130787_4131258_-	pfam00582, Usp, Universal stress protein family	NA|115aa|down_2|NZ_CP052850.1_4131346_4131691_-	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_3|NZ_CP052850.1_4131790_4133191_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP052850.1_4133379_4134294_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|220aa|down_5|NZ_CP052850.1_4134290_4134950_+	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|308aa|down_6|NZ_CP052850.1_4135039_4135963_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|152aa|down_7|NZ_CP052850.1_4135968_4136424_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|368aa|down_8|NZ_CP052850.1_4136420_4137524_-	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria	NA|91aa|down_9|NZ_CP052850.1_4137479_4137752_+	pfam04138, GtrA, GtrA-like protein
