assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	1	548324-548425	1	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	GGTAGGTGCCGACCGTTGGTCGGCA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA|88aa|up_3|NZ_CP052863.1_545458_545722_-,NA	NA|160aa|up_9|NZ_CP052863.1_539182_539662_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|435aa|up_8|NZ_CP052863.1_539811_541116_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|356aa|up_7|NZ_CP052863.1_541094_542162_+	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases	NA|188aa|up_6|NZ_CP052863.1_542245_542809_-	pfam11454, DUF3016, Protein of unknown function (DUF3016)	NA|663aa|up_5|NZ_CP052863.1_543053_545042_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|97aa|up_4|NZ_CP052863.1_545085_545376_+	pfam11607, DUF3247, Protein of unknown function (DUF3247)	NA|88aa|up_3|NZ_CP052863.1_545458_545722_-	NA	NA|355aa|up_2|NZ_CP052863.1_545878_546943_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|234aa|up_1|NZ_CP052863.1_546939_547641_+	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like	NA|228aa|up_0|NZ_CP052863.1_547637_548321_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|403aa|down_0|NZ_CP052863.1_548435_549644_-	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I	NA|172aa|down_1|NZ_CP052863.1_549643_550159_-	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA|357aa|down_2|NZ_CP052863.1_550349_551420_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|304aa|down_3|NZ_CP052863.1_551750_552662_-	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain	NA|213aa|down_4|NZ_CP052863.1_552800_553439_-	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]	NA|310aa|down_5|NZ_CP052863.1_553547_554477_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|264aa|down_6|NZ_CP052863.1_554473_555265_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|221aa|down_7|NZ_CP052863.1_555330_555993_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|614aa|down_8|NZ_CP052863.1_556101_557943_-	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|193aa|down_9|NZ_CP052863.1_558424_559003_+	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	2	714751-714858	2	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	TTGCTCTGGTAGGTGCCAACCTTGGTTGGCACG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA|238aa|up_9|NZ_CP052863.1_705937_706651_-,NA|158aa|up_8|NZ_CP052863.1_706725_707199_-,NA|295aa|up_6|NZ_CP052863.1_708601_709486_-,NA|137aa|down_0|NZ_CP052863.1_714935_715346_-,NA|197aa|down_8|NZ_CP052863.1_724005_724596_+	NA|238aa|up_9|NZ_CP052863.1_705937_706651_-	NA	NA|158aa|up_8|NZ_CP052863.1_706725_707199_-	NA	NA|360aa|up_7|NZ_CP052863.1_707473_708553_+	TIGR03875, RNA_lig_partner, RNA ligase partner, MJ_0950 family	NA|295aa|up_6|NZ_CP052863.1_708601_709486_-	NA	NA|207aa|up_5|NZ_CP052863.1_709639_710260_-	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|209aa|up_4|NZ_CP052863.1_710671_711298_+	PRK09289, PRK09289, riboflavin synthase	NA|367aa|up_3|NZ_CP052863.1_711294_712395_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|156aa|up_2|NZ_CP052863.1_712588_713056_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|160aa|up_1|NZ_CP052863.1_713052_713532_+	PRK00202, nusB, transcription antitermination factor NusB	NA|321aa|up_0|NZ_CP052863.1_713732_714695_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|137aa|down_0|NZ_CP052863.1_714935_715346_-	NA	NA|241aa|down_1|NZ_CP052863.1_715833_716556_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|172aa|down_2|NZ_CP052863.1_716611_717127_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|845aa|down_3|NZ_CP052863.1_717545_720080_+	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|170aa|down_4|NZ_CP052863.1_720118_720628_+	PRK15296, PRK15296, fimbrial protein SthA	NA|323aa|down_5|NZ_CP052863.1_720718_721687_+	pfam00419, Fimbrial, Fimbrial protein	NA|320aa|down_6|NZ_CP052863.1_721854_722814_+	pfam00419, Fimbrial, Fimbrial protein	NA|97aa|down_7|NZ_CP052863.1_723629_723920_+	pfam00419, Fimbrial, Fimbrial protein	NA|197aa|down_8|NZ_CP052863.1_724005_724596_+	NA	NA|972aa|down_9|NZ_CP052863.1_724776_727692_+	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	3	785760-785859	3	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	TTCATCCACGCATGGCGTGGATCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA|144aa|up_1|NZ_CP052863.1_783021_783453_-,NA|312aa|down_5|NZ_CP052863.1_792885_793821_+	NA|904aa|up_9|NZ_CP052863.1_772209_774921_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|169aa|up_8|NZ_CP052863.1_775008_775515_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|404aa|up_7|NZ_CP052863.1_775675_776887_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|up_6|NZ_CP052863.1_777212_778928_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|up_5|NZ_CP052863.1_778924_779725_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|353aa|up_4|NZ_CP052863.1_779886_780945_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|276aa|up_3|NZ_CP052863.1_780993_781821_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|up_2|NZ_CP052863.1_781878_782874_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|up_1|NZ_CP052863.1_783021_783453_-	NA	NA|306aa|up_0|NZ_CP052863.1_783562_784480_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|433aa|down_0|NZ_CP052863.1_786848_788147_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|324aa|down_1|NZ_CP052863.1_788340_789312_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|65aa|down_2|NZ_CP052863.1_789616_789811_+	pfam10636, hemP, Hemin uptake protein hemP	NA|736aa|down_3|NZ_CP052863.1_790000_792208_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|200aa|down_4|NZ_CP052863.1_792212_792812_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|312aa|down_5|NZ_CP052863.1_792885_793821_+	NA	NA|837aa|down_6|NZ_CP052863.1_793923_796434_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|216aa|down_7|NZ_CP052863.1_796430_797078_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|215aa|down_8|NZ_CP052863.1_797153_797798_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases	NA|238aa|down_9|NZ_CP052863.1_797885_798599_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	4	848483-848587	4	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	TTTGCCGGCCAGCGGCCGGCACTACC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA|109aa|up_3|NZ_CP052863.1_845654_845981_-,NA|140aa|down_0|NZ_CP052863.1_848649_849069_-	NA|185aa|up_9|NZ_CP052863.1_839219_839774_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|312aa|up_8|NZ_CP052863.1_839770_840706_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|194aa|up_7|NZ_CP052863.1_840702_841284_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|774aa|up_6|NZ_CP052863.1_841615_843937_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	NA|358aa|up_5|NZ_CP052863.1_843988_845062_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|154aa|up_4|NZ_CP052863.1_845189_845651_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|109aa|up_3|NZ_CP052863.1_845654_845981_-	NA	NA|195aa|up_2|NZ_CP052863.1_845977_846562_-	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|107aa|up_1|NZ_CP052863.1_846660_846981_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|487aa|up_0|NZ_CP052863.1_846977_848438_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|140aa|down_0|NZ_CP052863.1_848649_849069_-	NA	NA|184aa|down_1|NZ_CP052863.1_849191_849743_+	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT	NA|365aa|down_2|NZ_CP052863.1_849802_850897_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|581aa|down_3|NZ_CP052863.1_851348_853091_+	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13	NA|162aa|down_4|NZ_CP052863.1_853211_853697_-	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|112aa|down_5|NZ_CP052863.1_853776_854112_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|198aa|down_6|NZ_CP052863.1_854108_854702_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|425aa|down_7|NZ_CP052863.1_854779_856054_+	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed	NA|190aa|down_8|NZ_CP052863.1_856050_856620_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|261aa|down_9|NZ_CP052863.1_857227_858010_-	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	5	1466677-1466815	5	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	GGTAGATCCACGCCATGCGTGGATGGAGGCGGTGCCGACCAA	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA,NA	NA|482aa|up_9|NZ_CP052863.1_1455810_1457256_+	PRK10735, tldD, protease TldD; Provisional	NA|196aa|up_8|NZ_CP052863.1_1457297_1457885_-	PRK05255, PRK05255, ribosome-associated protein	NA|456aa|up_7|NZ_CP052863.1_1457953_1459321_+	PRK11040, PRK11040, peptidase PmbA; Provisional	NA|125aa|up_6|NZ_CP052863.1_1459408_1459783_+	pfam09685, DUF4870, Domain of unknown function (DUF4870)	NA|293aa|up_5|NZ_CP052863.1_1459864_1460743_-	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|87aa|up_4|NZ_CP052863.1_1460732_1460993_-	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|429aa|up_3|NZ_CP052863.1_1461029_1462316_-	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional	NA|182aa|up_2|NZ_CP052863.1_1462854_1463400_-	pfam14903, WG_beta_rep, WG containing repeat	NA|569aa|up_1|NZ_CP052863.1_1463396_1465103_-	smart00098, alkPPc, Alkaline phosphatase homologues	NA|445aa|up_0|NZ_CP052863.1_1465256_1466591_+	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|258aa|down_0|NZ_CP052863.1_1466914_1467688_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|193aa|down_1|NZ_CP052863.1_1467819_1468398_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|161aa|down_2|NZ_CP052863.1_1468471_1468954_+	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|415aa|down_3|NZ_CP052863.1_1469053_1470298_+	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|417aa|down_4|NZ_CP052863.1_1470301_1471552_+	PRK00711, PRK00711, D-amino acid dehydrogenase	NA|453aa|down_5|NZ_CP052863.1_1471548_1472907_+	PRK06116, PRK06116, glutathione reductase; Validated	NA|307aa|down_6|NZ_CP052863.1_1473025_1473946_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|103aa|down_7|NZ_CP052863.1_1473972_1474281_+	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|225aa|down_8|NZ_CP052863.1_1474374_1475049_+	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|528aa|down_9|NZ_CP052863.1_1475099_1476683_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	6	1632187-1632421	1,6	PILER-CR,CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	CCAAGCCGGTGGCGAAGAAGGCAGCAACCAAGCCCGCGC,GGTGAAGAAGGCTGCCGCCAAGCC	39,24	0	0	NA	NA	NA:NA	2,4	4	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA,NA	NA|709aa|up_9|NZ_CP052863.1_1621578_1623705_+	cd01948, EAL, EAL domain	NA|339aa|up_8|NZ_CP052863.1_1623778_1624795_-	TIGR03821, EFP_modif_epmB, EF-P beta-lysylation protein EpmB	NA|189aa|up_7|NZ_CP052863.1_1624913_1625480_+	PRK00529, PRK00529, elongation factor P; Validated	NA|448aa|up_6|NZ_CP052863.1_1625680_1627024_+	PRK09045, PRK09045, TRZ/ATZ family hydrolase	NA|239aa|up_5|NZ_CP052863.1_1627049_1627766_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|232aa|up_4|NZ_CP052863.1_1627762_1628458_+	PRK13226, PRK13226, phosphoglycolate phosphatase; Provisional	NA|235aa|up_3|NZ_CP052863.1_1628469_1629174_+	COG1562, ERG9, Phytoene/squalene synthetase [Lipid metabolism]	NA|283aa|up_2|NZ_CP052863.1_1629279_1630128_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|449aa|up_1|NZ_CP052863.1_1630127_1631474_-	PRK09236, PRK09236, dihydroorotase; Reviewed	NA|85aa|up_0|NZ_CP052863.1_1631475_1631730_-	PRK00041, PRK00041, hypothetical protein; Validated	NA|416aa|down_0|NZ_CP052863.1_1633603_1634851_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|151aa|down_1|NZ_CP052863.1_1634847_1635300_-	pfam02657, SufE, Fe-S metabolism associated domain	NA|459aa|down_2|NZ_CP052863.1_1635354_1636731_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|188aa|down_3|NZ_CP052863.1_1636918_1637482_+	PRK11280, PRK11280, hypothetical protein; Provisional	NA|337aa|down_4|NZ_CP052863.1_1637816_1638827_+	PRK04523, PRK04523, N-acetylornithine carbamoyltransferase; Reviewed	NA|399aa|down_5|NZ_CP052863.1_1638946_1640143_+	PRK04527, PRK04527, argininosuccinate synthase; Provisional	NA|363aa|down_6|NZ_CP052863.1_1640294_1641383_+	PRK08737, PRK08737, acetylornithine deacetylase; Provisional	NA|443aa|down_7|NZ_CP052863.1_1641408_1642737_+	PRK04531, PRK04531, acetylglutamate kinase; Provisional	NA|201aa|down_8|NZ_CP052863.1_1642740_1643343_+	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|318aa|down_9|NZ_CP052863.1_1643339_1644293_+	TIGR01850, N-acetyl-gamma-glutamyl-phosphate_reductase, N-acetyl-gamma-glutamyl-phosphate reductase, common form
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	7	2257213-2257322	7	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	CGGTGCCCACCAAGGTGGGCATCTACC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA,NA|155aa|down_3|NZ_CP052863.1_2260251_2260716_-	NA|100aa|up_9|NZ_CP052863.1_2244179_2244479_-	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein	NA|390aa|up_8|NZ_CP052863.1_2244741_2245911_+	PRK11556, PRK11556, MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA|1038aa|up_7|NZ_CP052863.1_2245907_2249021_+	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional	NA|230aa|up_6|NZ_CP052863.1_2249017_2249707_+	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator	NA|454aa|up_5|NZ_CP052863.1_2249703_2251065_+	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase	NA|320aa|up_4|NZ_CP052863.1_2251074_2252034_-	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|222aa|up_3|NZ_CP052863.1_2252147_2252813_+	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional	NA|732aa|up_2|NZ_CP052863.1_2252969_2255165_-	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|195aa|up_1|NZ_CP052863.1_2255394_2255979_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|363aa|up_0|NZ_CP052863.1_2256056_2257145_+	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|309aa|down_0|NZ_CP052863.1_2257324_2258251_-	pfam13748, ABC_membrane_3, ABC transporter transmembrane region	NA|359aa|down_1|NZ_CP052863.1_2258406_2259483_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|239aa|down_2|NZ_CP052863.1_2259487_2260204_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|155aa|down_3|NZ_CP052863.1_2260251_2260716_-	NA	NA|394aa|down_4|NZ_CP052863.1_2261045_2262227_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|648aa|down_5|NZ_CP052863.1_2262229_2264173_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|198aa|down_6|NZ_CP052863.1_2264290_2264884_-	pfam00924, MS_channel, Mechanosensitive ion channel	NA|289aa|down_7|NZ_CP052863.1_2264889_2265756_-	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|128aa|down_8|NZ_CP052863.1_2265856_2266240_-	pfam07100, ASRT, Anabaena sensory rhodopsin transducer	NA|329aa|down_9|NZ_CP052863.1_2266299_2267286_+	TIGR03885, putative_dehydrogenase_protein, probable non-F420 flavinoid oxidoreductase
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	8	2472390-2472496	8	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	GGTAGATCCACGCCATGCGTGGAT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA|128aa|up_9|NZ_CP052863.1_2463069_2463453_+,NA|157aa|up_5|NZ_CP052863.1_2467342_2467813_+,NA|72aa|up_0|NZ_CP052863.1_2471534_2471750_+,NA|113aa|down_4|NZ_CP052863.1_2481130_2481469_-	NA|128aa|up_9|NZ_CP052863.1_2463069_2463453_+	NA	NA|762aa|up_8|NZ_CP052863.1_2463531_2465817_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|271aa|up_7|NZ_CP052863.1_2465955_2466768_+	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]	NA|109aa|up_6|NZ_CP052863.1_2466903_2467230_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|157aa|up_5|NZ_CP052863.1_2467342_2467813_+	NA	NA|154aa|up_4|NZ_CP052863.1_2467814_2468276_+	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|381aa|up_3|NZ_CP052863.1_2468272_2469415_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|205aa|up_2|NZ_CP052863.1_2469411_2470026_+	PRK00218, PRK00218, lysogenization regulator HflD	NA|397aa|up_1|NZ_CP052863.1_2470245_2471436_+	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|72aa|up_0|NZ_CP052863.1_2471534_2471750_+	NA	NA|920aa|down_0|NZ_CP052863.1_2472536_2475296_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|701aa|down_1|NZ_CP052863.1_2475427_2477530_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|591aa|down_2|NZ_CP052863.1_2477534_2479307_+	cd01948, EAL, EAL domain	NA|406aa|down_3|NZ_CP052863.1_2479821_2481039_-	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|113aa|down_4|NZ_CP052863.1_2481130_2481469_-	NA	NA|102aa|down_5|NZ_CP052863.1_2481465_2481771_-	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|219aa|down_6|NZ_CP052863.1_2481846_2482503_-	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|315aa|down_7|NZ_CP052863.1_2482802_2483747_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|132aa|down_8|NZ_CP052863.1_2483884_2484280_+	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|136aa|down_9|NZ_CP052863.1_2484283_2484691_+	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	9	3426009-3426206	9	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	GCCCATCCACGCTTGGCGTGGATCTAC	27	0	0	NA	NA	NA	3	3	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA|319aa|up_5|NZ_CP052863.1_3419981_3420938_+,NA|240aa|up_4|NZ_CP052863.1_3420934_3421654_+,NA|193aa|up_1|NZ_CP052863.1_3424488_3425067_-,NA|199aa|up_0|NZ_CP052863.1_3425047_3425644_-,NA	NA|957aa|up_9|NZ_CP052863.1_3412533_3415404_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|170aa|up_8|NZ_CP052863.1_3415659_3416169_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|323aa|up_7|NZ_CP052863.1_3416165_3417134_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|929aa|up_6|NZ_CP052863.1_3417148_3419935_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|319aa|up_5|NZ_CP052863.1_3419981_3420938_+	NA	NA|240aa|up_4|NZ_CP052863.1_3420934_3421654_+	NA	NA|222aa|up_3|NZ_CP052863.1_3421736_3422402_-	pfam07947, YhhN, YhhN family	NA|628aa|up_2|NZ_CP052863.1_3422398_3424282_-	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only]	NA|193aa|up_1|NZ_CP052863.1_3424488_3425067_-	NA	NA|199aa|up_0|NZ_CP052863.1_3425047_3425644_-	NA	NA|317aa|down_0|NZ_CP052863.1_3426253_3427204_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|175aa|down_1|NZ_CP052863.1_3427231_3427756_-	PRK00376, lspA, lipoprotein signal peptidase	NA|944aa|down_2|NZ_CP052863.1_3427755_3430587_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|316aa|down_3|NZ_CP052863.1_3430583_3431531_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|535aa|down_4|NZ_CP052863.1_3431606_3433211_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|90aa|down_5|NZ_CP052863.1_3433328_3433598_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|351aa|down_6|NZ_CP052863.1_3433941_3434994_-	PRK12298, obgE, GTPase CgtA; Reviewed	NA|88aa|down_7|NZ_CP052863.1_3435171_3435435_-	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|103aa|down_8|NZ_CP052863.1_3435453_3435762_-	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|998aa|down_9|NZ_CP052863.1_3436079_3439073_+	PRK00349, uvrA, excinuclease ABC subunit UvrA
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	10	3927848-3927948	10	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	GCTCGCTGTAAGCGAGGGGCTGAGGGT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA|412aa|up_5|NZ_CP052863.1_3919921_3921157_-,NA	NA|606aa|up_9|NZ_CP052863.1_3915066_3916884_-	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|128aa|up_8|NZ_CP052863.1_3917118_3917502_-	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only]	NA|348aa|up_7|NZ_CP052863.1_3917672_3918716_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|302aa|up_6|NZ_CP052863.1_3919005_3919911_-	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|412aa|up_5|NZ_CP052863.1_3919921_3921157_-	NA	NA|197aa|up_4|NZ_CP052863.1_3921174_3921765_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|726aa|up_3|NZ_CP052863.1_3922009_3924187_-	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|337aa|up_2|NZ_CP052863.1_3924443_3925454_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|237aa|up_1|NZ_CP052863.1_3925471_3926182_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_0|NZ_CP052863.1_3926169_3926448_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|406aa|down_0|NZ_CP052863.1_3928102_3929320_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|425aa|down_1|NZ_CP052863.1_3929420_3930695_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|down_2|NZ_CP052863.1_3930691_3931837_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|down_3|NZ_CP052863.1_3932740_3933835_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|down_4|NZ_CP052863.1_3933967_3935080_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|down_5|NZ_CP052863.1_3935076_3937152_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|down_6|NZ_CP052863.1_3937155_3937641_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|366aa|down_7|NZ_CP052863.1_3937637_3938735_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|349aa|down_8|NZ_CP052863.1_3938856_3939903_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_9|NZ_CP052863.1_3940186_3941125_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A
GCF_012971765.1_ASM1297176v1	NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	11	3937664-3937777	11	CRISPRCasFinder	no		cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	Orphan	GTTGCCGGCCAGCGGCCGGCACTACCGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,Cas9_archaeal,DEDDh,PD-DExK,WYL,RT	NA,NA|244aa|down_3|NZ_CP052863.1_3942239_3942971_-,NA|87aa|down_7|NZ_CP052863.1_3946626_3946887_+	NA|237aa|up_9|NZ_CP052863.1_3925471_3926182_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_8|NZ_CP052863.1_3926169_3926448_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|353aa|up_7|NZ_CP052863.1_3926799_3927858_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|406aa|up_6|NZ_CP052863.1_3928102_3929320_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|425aa|up_5|NZ_CP052863.1_3929420_3930695_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP052863.1_3930691_3931837_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|up_3|NZ_CP052863.1_3932740_3933835_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|up_2|NZ_CP052863.1_3933967_3935080_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|up_1|NZ_CP052863.1_3935076_3937152_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|up_0|NZ_CP052863.1_3937155_3937641_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|349aa|down_0|NZ_CP052863.1_3938856_3939903_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_1|NZ_CP052863.1_3940186_3941125_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|212aa|down_2|NZ_CP052863.1_3941616_3942252_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|244aa|down_3|NZ_CP052863.1_3942239_3942971_-	NA	NA|643aa|down_4|NZ_CP052863.1_3943098_3945027_-	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain	NA|254aa|down_5|NZ_CP052863.1_3945133_3945895_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|151aa|down_6|NZ_CP052863.1_3945975_3946428_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|87aa|down_7|NZ_CP052863.1_3946626_3946887_+	NA	NA|112aa|down_8|NZ_CP052863.1_3946962_3947298_+	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain	NA|141aa|down_9|NZ_CP052863.1_3947365_3947788_+	pfam04120, Iron_permease, Low affinity iron permease
