The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	4591696	1162524	1169857	4591696	integrase	Stenotrophomonas_phage(71.43%)	10	1156621:1156635	1170721:1170735
1156621:1156635	attL	CGGCCACCGACCGCA	NA	NA	NA	NA
WP_005410745.1|1162524_1163190_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2I7S903	Vibrio_phage	35.9	7.0e-24
WP_049449188.1|1163372_1164329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448211.1|1164706_1165681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169448212.1|1165677_1166235_+	hypothetical protein	NA	S5FXQ0	Shigella_phage	27.4	6.5e-07
WP_169448213.1|1166307_1167150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169449094.1|1167196_1168348_-|integrase	integrase	integrase	V9IQN0	Stenotrophomonas_phage	39.0	3.6e-68
WP_169448214.1|1168344_1168560_-	hypothetical protein	NA	V9IQX6	Stenotrophomonas_phage	51.6	1.8e-10
WP_169448215.1|1168744_1169125_-	hypothetical protein	NA	B7SYG6	Stenotrophomonas_phage	82.5	4.8e-54
WP_169448216.1|1169132_1169621_-	hypothetical protein	NA	B7SYG7	Stenotrophomonas_phage	90.7	4.7e-78
WP_169448217.1|1169617_1169857_-	hypothetical protein	NA	B7SYG8	Stenotrophomonas_phage	72.2	1.8e-27
1170721:1170735	attR	TGCGGTCGGTGGCCG	NA	NA	NA	NA
>prophage 2
NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	4591696	1174498	1202836	4591696	portal,terminase	Stenotrophomonas_phage(100.0%)	26	NA	NA
WP_169448226.1|1174498_1176913_+	DNA primase	NA	B7SYD0	Stenotrophomonas_phage	97.1	0.0e+00
WP_169448227.1|1177255_1177900_+	hypothetical protein	NA	B7SYD2	Stenotrophomonas_phage	79.4	1.1e-74
WP_169448228.1|1177896_1179822_+|terminase	phage terminase large subunit family protein	terminase	B7SYD3	Stenotrophomonas_phage	96.6	0.0e+00
WP_053451655.1|1179815_1180136_+	hypothetical protein	NA	B7SYD4	Stenotrophomonas_phage	96.2	8.7e-49
WP_169448229.1|1180215_1180431_+	hypothetical protein	NA	B7SYD5	Stenotrophomonas_phage	97.2	4.6e-30
WP_169448230.1|1180432_1181923_+|portal	phage portal protein	portal	B7SYD6	Stenotrophomonas_phage	98.8	1.5e-284
WP_169448231.1|1181919_1183902_+	peptidase S14	NA	B7SYD7	Stenotrophomonas_phage	98.5	0.0e+00
WP_169448232.1|1183924_1184290_+	DUF2190 family protein	NA	B7SYD8	Stenotrophomonas_phage	91.7	1.5e-52
WP_169448233.1|1184370_1184802_+	structural protein P5	NA	B7SYD9	Stenotrophomonas_phage	93.0	4.9e-71
WP_169448234.1|1184798_1185137_+	hypothetical protein	NA	B7SYE0	Stenotrophomonas_phage	92.0	9.2e-49
WP_169448235.1|1185133_1185625_+	endopeptidase	NA	B7SYE1	Stenotrophomonas_phage	82.2	4.4e-60
WP_053451663.1|1185621_1185966_+	hypothetical protein	NA	B7SYE3	Stenotrophomonas_phage	70.2	1.2e-35
WP_053451664.1|1185958_1186441_+	hypothetical protein	NA	B7SYE4	Stenotrophomonas_phage	80.6	8.5e-56
WP_169449095.1|1186454_1187255_+	hypothetical protein	NA	B7SYE5	Stenotrophomonas_phage	95.1	1.5e-142
WP_169448236.1|1187326_1187977_+	hypothetical protein	NA	B7SYE6	Stenotrophomonas_phage	90.3	2.0e-108
WP_169448237.1|1187969_1191719_+	Laminin subunit alpha-2	NA	B7SYE7	Stenotrophomonas_phage	70.9	0.0e+00
WP_053451668.1|1191718_1192135_+	hypothetical protein	NA	B7SYE8	Stenotrophomonas_phage	84.8	1.8e-62
WP_169448238.1|1192138_1195744_+	hypothetical protein	NA	B7SYE9	Stenotrophomonas_phage	81.6	0.0e+00
WP_169448239.1|1195740_1196736_+	hypothetical protein	NA	B7SYF0	Stenotrophomonas_phage	35.6	1.1e-41
WP_169448240.1|1197128_1198931_+	hypothetical protein	NA	B7SYF1	Stenotrophomonas_phage	78.6	3.9e-178
WP_049460302.1|1198920_1199154_+	hypothetical protein	NA	B7SYF2	Stenotrophomonas_phage	89.6	7.5e-34
WP_169448241.1|1199301_1200093_+	DNA adenine methylase	NA	B7SYF3	Stenotrophomonas_phage	98.1	1.7e-154
WP_169448242.1|1200096_1200762_-	SOS response-associated peptidase	NA	B7SYF4	Stenotrophomonas_phage	95.5	9.4e-122
WP_087803164.1|1201309_1201579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448243.1|1201640_1202255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_169448244.1|1202335_1202836_+	hypothetical protein	NA	B7SYF7	Stenotrophomonas_phage	85.2	5.2e-72
>prophage 3
NZ_CP052863	Stenotrophomonas maltophilia strain CF13 chromosome, complete genome	4591696	3606217	3698628	4591696	tail,integrase,transposase,plate	Escherichia_phage(21.74%)	95	3684064:3684084	3704658:3704678
WP_123958279.1|3606217_3606709_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_049451058.1|3607006_3607957_-	aspartate carbamoyltransferase catalytic subunit	NA	NA	NA	NA	NA
WP_005408378.1|3607972_3608467_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_005408377.1|3608459_3609026_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_123958278.1|3609117_3610905_+	DUF4153 domain-containing protein	NA	NA	NA	NA	NA
WP_123958277.1|3610901_3611447_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_014036228.1|3611530_3612238_-	YitT family protein	NA	NA	NA	NA	NA
WP_014646220.1|3612349_3612562_-	DUF4287 domain-containing protein	NA	NA	NA	NA	NA
WP_169448881.1|3613033_3613933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_123958275.1|3613980_3614964_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_005408369.1|3615171_3616314_-	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA	NA
WP_004147099.1|3616414_3617452_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA	NA
WP_005408368.1|3617539_3618217_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_005408367.1|3618235_3619057_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_012479333.1|3619116_3619992_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005408365.1|3620090_3620693_+	short chain dehydrogenase	NA	NA	NA	NA	NA
WP_005412484.1|3620765_3621200_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_049451066.1|3621229_3622651_+	MFS transporter	NA	NA	NA	NA	NA
WP_005408362.1|3622739_3624761_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_164221393.1|3624760_3625735_-	DUF4105 domain-containing protein	NA	NA	NA	NA	NA
WP_005408360.1|3625906_3626311_+	GFA family protein	NA	NA	NA	NA	NA
WP_169448882.1|3626590_3628108_-	MFS transporter	NA	NA	NA	NA	NA
WP_169448883.1|3628215_3629151_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	21.6	2.6e-08
WP_169448884.1|3629190_3630054_-	DMT family transporter	NA	NA	NA	NA	NA
WP_169448885.1|3630187_3631567_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_169448886.1|3631505_3632450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_169448887.1|3632565_3633264_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_123958266.1|3633352_3634027_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_074726401.1|3634030_3634678_-	Qnr family pentapeptide repeat protein	NA	NA	NA	NA	NA
WP_169448888.1|3634835_3635612_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_049451077.1|3635623_3636757_+	MFS transporter	NA	NA	NA	NA	NA
WP_049451078.1|3636766_3638272_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_169448889.1|3638283_3640422_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_049451080.1|3640551_3640947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012479313.1|3641157_3641412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005408344.1|3641423_3641648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448890.1|3642136_3644473_+	toprim domain-containing protein	NA	D5LH15	Escherichia_phage	43.1	4.0e-135
WP_149500757.1|3644473_3644755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024956102.1|3644820_3645048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049451083.1|3645089_3645728_+	hypothetical protein	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	37.6	1.0e-19
WP_033835195.1|3645880_3646264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005408338.1|3646598_3647048_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005408337.1|3647044_3647395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049459412.1|3647391_3647877_+	glycoside hydrolase family 104 protein	NA	D5LH07	Escherichia_phage	55.6	5.4e-42
WP_049451086.1|3647873_3648251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024956107.1|3648603_3649158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012479303.1|3649154_3649745_+|plate	phage baseplate assembly protein V	plate	A0A193GYL5	Enterobacter_phage	38.2	1.9e-25
WP_005408332.1|3649797_3650136_+	GPW/gp25 family protein	NA	A0A193GYY8	Enterobacter_phage	62.2	7.8e-32
WP_005412462.1|3650138_3651035_+|plate	baseplate J/gp47 family protein	plate	V5YTH6	Pseudomonas_phage	56.1	1.9e-80
WP_049397154.1|3651027_3651807_+|tail	phage tail protein I	tail	V9IQK7	Stenotrophomonas_phage	51.1	7.1e-44
WP_169448891.1|3651814_3653782_+|tail	tail fiber domain-containing protein	tail	V9IQX0	Stenotrophomonas_phage	38.9	6.9e-104
WP_169448892.1|3653783_3654443_+	hypothetical protein	NA	V9IQM3	Stenotrophomonas_phage	34.6	7.9e-20
WP_169448893.1|3654549_3655752_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	A0A088FVH5	Escherichia_phage	54.2	2.1e-127
WP_005412457.1|3655754_3656258_+|tail	phage major tail tube protein	tail	A0A193GYM4	Enterobacter_phage	51.2	1.4e-40
WP_005412456.1|3656338_3656629_+|tail	phage tail assembly protein	tail	A0A193GYZ8	Enterobacter_phage	58.5	1.5e-18
WP_169448894.1|3656749_3659197_+|tail	phage tail tape measure protein	tail	A0A1W6JT50	Escherichia_phage	22.7	1.7e-27
WP_005408323.1|3659199_3659667_+|tail	phage tail protein	tail	A0A218M4I2	Erwinia_phage	35.2	1.1e-15
WP_049451092.1|3659650_3659866_+|tail	tail protein	tail	A0A193GYC8	Enterobacter_phage	52.9	2.7e-14
WP_049451093.1|3659856_3660930_+|tail	phage tail protein	tail	D5LGY1	Escherichia_phage	51.9	3.2e-95
WP_005408320.1|3660960_3661341_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_005412452.1|3661760_3662114_-	PilZ domain-containing protein	NA	NA	NA	NA	NA
WP_169448895.1|3662110_3663067_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_169448896.1|3663063_3663729_-	dTMP kinase	NA	W8D0J5	Erwinia_phage	35.0	1.2e-20
WP_049403323.1|3663725_3664787_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_049451096.1|3664984_3666349_-	aminodeoxychorismate synthase component I	NA	NA	NA	NA	NA
WP_169448897.1|3666539_3667802_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_005408313.1|3667945_3668185_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	44.6	4.6e-10
WP_005408312.1|3668337_3669081_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	32.3	4.7e-13
WP_169448898.1|3669163_3670108_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_005408310.1|3670364_3671147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448899.1|3671225_3672203_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_005408308.1|3672294_3672489_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_012479287.1|3672596_3673106_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_169448900.1|3673219_3673789_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_049451099.1|3674000_3675842_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_005408304.1|3675884_3676838_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_108270515.1|3676840_3677785_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_099605982.1|3677777_3679727_+	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA	NA
WP_049451102.1|3679723_3680251_+	membrane protein	NA	NA	NA	NA	NA
WP_108270514.1|3680328_3680688_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA	NA
WP_005408299.1|3680755_3681355_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_005408298.1|3681466_3681787_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_049451114.1|3681793_3683827_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	41.4	2.1e-47
3684064:3684084	attL	AATCCCCCTCTCTCCGCCAGA	NA	NA	NA	NA
WP_169448901.1|3684164_3685586_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_169448902.1|3686081_3687650_-	MobA/MobL family protein	NA	NA	NA	NA	NA
WP_169448903.1|3687862_3689812_-	DUF3732 domain-containing protein	NA	NA	NA	NA	NA
WP_169448904.1|3690324_3691464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448905.1|3691590_3692127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448906.1|3692162_3692462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448907.1|3692475_3692955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_169448908.1|3693051_3693384_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_169449121.1|3695175_3695796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_134708996.1|3696059_3696269_+	hypothetical protein	NA	A0A0S2SY70	Pseudomonas_phage	56.7	1.0e-13
WP_169448909.1|3696315_3696705_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_169448910.1|3697230_3698628_+|integrase	site-specific integrase	integrase	A0A059XK29	uncultured_phage	22.9	3.3e-07
3704658:3704678	attR	AATCCCCCTCTCTCCGCCAGA	NA	NA	NA	NA
