assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934815.1_ASM1293481v1	NZ_CP051749	Escherichia coli strain SCU-486 chromosome, complete genome	1	846183-846821	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	TypeI-E	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	NA,NA	NA|254aa|up_9|NZ_CP051749.1_837995_838757_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP051749.1_838737_839787_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP051749.1_839783_840263_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP051749.1_840262_840973_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP051749.1_840991_841303_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP051749.1_841496_841820_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP051749.1_841869_842475_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP051749.1_842474_843902_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP051749.1_843903_844812_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP051749.1_845063_846101_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP051749.1_846917_847211_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP051749.1_847207_848131_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP051749.1_848127_848778_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP051749.1_848759_849506_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP051749.1_849516_850572_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP051749.1_850586_851123_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|521aa|down_6|NZ_CP051749.1_851119_852682_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP051749.1_852779_855479_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP051749.1_855673_855826_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP051749.1_856090_856825_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_012934815.1_ASM1293481v1	NZ_CP051749	Escherichia coli strain SCU-486 chromosome, complete genome	2	873964-874846	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,14,13	14	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	NA,NA	NA|87aa|up_9|NZ_CP051749.1_862430_862691_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP051749.1_862707_863283_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP051749.1_863417_864766_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|298aa|up_6|NZ_CP051749.1_864865_865759_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP051749.1_865722_866502_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|470aa|up_4|NZ_CP051749.1_866479_867889_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP051749.1_867910_869365_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP051749.1_869433_870219_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP051749.1_870537_871815_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP051749.1_871841_873320_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP051749.1_875184_875856_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP051749.1_876147_877020_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP051749.1_877079_878378_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP051749.1_878465_880103_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP051749.1_880330_881122_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP051749.1_881193_881529_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP051749.1_881528_881777_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP051749.1_881854_884089_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP051749.1_884136_885438_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP051749.1_885494_888251_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
GCF_012934815.1_ASM1293481v1	NZ_CP051749	Escherichia coli strain SCU-486 chromosome, complete genome	3	2431480-2431603	3	CRISPRCasFinder	no	DEDDh	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	NA,NA|30aa|down_7|NZ_CP051749.1_2440500_2440590_+	NA|471aa|up_9|NZ_CP051749.1_2420932_2422345_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051749.1_2422901_2423111_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051749.1_2423567_2424194_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051749.1_2424214_2426317_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051749.1_2426329_2426968_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051749.1_2427031_2427700_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051749.1_2427696_2428482_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051749.1_2428485_2429298_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051749.1_2429309_2430914_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051749.1_2431039_2431345_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051749.1_2431918_2433175_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051749.1_2433215_2434589_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051749.1_2434803_2435445_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051749.1_2435484_2436633_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051749.1_2436923_2438135_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051749.1_2438247_2439180_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051749.1_2439176_2440202_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051749.1_2440500_2440590_+	NA	NA|390aa|down_8|NZ_CP051749.1_2440755_2441925_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051749.1_2442070_2442652_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934815.1_ASM1293481v1	NZ_CP051749	Escherichia coli strain SCU-486 chromosome, complete genome	4	3187621-3187712	4	CRISPRCasFinder	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	NA|70aa|up_9|NZ_CP051749.1_3176871_3177081_-,NA	NA|70aa|up_9|NZ_CP051749.1_3176871_3177081_-	NA	NA|1321aa|up_8|NZ_CP051749.1_3177135_3181098_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051749.1_3181137_3181776_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051749.1_3182063_3183155_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051749.1_3183154_3183847_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051749.1_3183858_3184245_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP051749.1_3184252_3185053_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051749.1_3185062_3185653_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051749.1_3185663_3186158_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP051749.1_3186178_3187507_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051749.1_3188135_3188732_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051749.1_3188752_3188980_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051749.1_3189017_3190259_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP051749.1_3192068_3192989_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP051749.1_3192988_3193294_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP051749.1_3193445_3194045_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_6|NZ_CP051749.1_3194041_3196588_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP051749.1_3196587_3197760_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP051749.1_3197889_3198582_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP051749.1_3198554_3199583_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_012934815.1_ASM1293481v1	NZ_CP051749	Escherichia coli strain SCU-486 chromosome, complete genome	5	4251845-4251976	3	PILER-CR	no		DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	Orphan	ATCACCAATATTGAAAAT	18	0	0	NA	NA	NA	2	2	Orphan	DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,RT,WYL,PD-DExK,cas14j,DinG	NA,NA	NA|283aa|up_9|NZ_CP051749.1_4242384_4243233_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|78aa|up_8|NZ_CP051749.1_4243533_4243767_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP051749.1_4243852_4244332_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP051749.1_4244523_4246386_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP051749.1_4246378_4246909_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP051749.1_4247016_4248348_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP051749.1_4248406_4248694_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP051749.1_4248690_4249977_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP051749.1_4250027_4250969_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP051749.1_4250983_4251754_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP051749.1_4252225_4253740_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP051749.1_4253770_4254913_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP051749.1_4255041_4256259_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP051749.1_4256332_4257886_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP051749.1_4257994_4258780_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP051749.1_4258785_4259376_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP051749.1_4259494_4259890_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP051749.1_4260150_4263369_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP051749.1_4263386_4264535_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP051749.1_4264990_4265812_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
