assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	1	1648503-1648616	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	TGCCGGATGCGCTTCGCTTATCCGGCCTACAAA	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA	NA|62aa|up_9|NZ_CP051744.1_1638060_1638246_-	PRK09956, PRK09956, ISNCY family transposase	NA|320aa|up_8|NZ_CP051744.1_1638258_1639218_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP051744.1_1639410_1640601_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP051744.1_1640597_1641857_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP051744.1_1641846_1643475_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP051744.1_1643747_1645106_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP051744.1_1645110_1646187_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP051744.1_1646389_1647040_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP051744.1_1647093_1647348_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP051744.1_1647347_1648478_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP051744.1_1648667_1650953_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1253aa|down_1|NZ_CP051744.1_1651634_1655393_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP051744.1_1655532_1656255_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP051744.1_1656401_1659029_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP051744.1_1659177_1660866_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP051744.1_1660862_1661486_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP051744.1_1661629_1666024_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP051744.1_1666024_1667674_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP051744.1_1667678_1668455_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP051744.1_1668528_1669713_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	2	2341115-2341238	2	CRISPRCasFinder	no	DEDDh	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA|30aa|down_7|NZ_CP051744.1_2350134_2350224_+	NA|471aa|up_9|NZ_CP051744.1_2330567_2331980_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051744.1_2332536_2332746_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051744.1_2333202_2333829_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051744.1_2333849_2335952_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051744.1_2335964_2336603_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051744.1_2336666_2337335_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051744.1_2337331_2338117_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051744.1_2338120_2338933_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051744.1_2338944_2340549_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051744.1_2340674_2340980_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051744.1_2341552_2342809_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051744.1_2342849_2344223_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051744.1_2344437_2345079_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051744.1_2345118_2346267_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051744.1_2346557_2347769_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051744.1_2347881_2348814_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051744.1_2348810_2349836_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051744.1_2350134_2350224_+	NA	NA|390aa|down_8|NZ_CP051744.1_2350389_2351559_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051744.1_2351704_2352286_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	3	2864487-2864599	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	TTTTCTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA|47aa|up_9|NZ_CP051744.1_2859658_2859799_-,NA|34aa|up_4|NZ_CP051744.1_2861059_2861161_-,NA|161aa|up_3|NZ_CP051744.1_2861252_2861735_-,NA|98aa|up_1|NZ_CP051744.1_2863031_2863325_-,NA|158aa|down_3|NZ_CP051744.1_2866717_2867191_+,NA|311aa|down_4|NZ_CP051744.1_2867187_2868120_+	NA|47aa|up_9|NZ_CP051744.1_2859658_2859799_-	NA	NA|121aa|up_8|NZ_CP051744.1_2859795_2860158_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP051744.1_2860154_2860445_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_6|NZ_CP051744.1_2860437_2860608_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_5|NZ_CP051744.1_2860607_2861063_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_4|NZ_CP051744.1_2861059_2861161_-	NA	NA|161aa|up_3|NZ_CP051744.1_2861252_2861735_-	NA	NA|251aa|up_2|NZ_CP051744.1_2861990_2862743_-	pfam13643, DUF4145, Domain of unknown function (DUF4145)	NA|98aa|up_1|NZ_CP051744.1_2863031_2863325_-	NA	NA|234aa|up_0|NZ_CP051744.1_2863321_2864023_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP051744.1_2865035_2865575_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|76aa|down_1|NZ_CP051744.1_2865605_2865833_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|231aa|down_2|NZ_CP051744.1_2865943_2866636_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|158aa|down_3|NZ_CP051744.1_2866717_2867191_+	NA	NA|311aa|down_4|NZ_CP051744.1_2867187_2868120_+	NA	NA|69aa|down_5|NZ_CP051744.1_2868604_2868811_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_6|NZ_CP051744.1_2868886_2869183_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_7|NZ_CP051744.1_2869188_2869974_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_8|NZ_CP051744.1_2869970_2870651_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|53aa|down_9|NZ_CP051744.1_2870647_2870806_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	4	3111887-3111978	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA|70aa|up_9|NZ_CP051744.1_3101137_3101347_-,NA	NA|70aa|up_9|NZ_CP051744.1_3101137_3101347_-	NA	NA|1321aa|up_8|NZ_CP051744.1_3101401_3105364_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051744.1_3105403_3106042_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051744.1_3106329_3107421_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051744.1_3107420_3108113_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051744.1_3108124_3108511_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP051744.1_3108518_3109319_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051744.1_3109328_3109919_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051744.1_3109929_3110424_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP051744.1_3110444_3111773_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051744.1_3112401_3112998_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051744.1_3113018_3113246_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051744.1_3113283_3114525_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|307aa|down_3|NZ_CP051744.1_3115059_3115980_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_4|NZ_CP051744.1_3115979_3116285_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_5|NZ_CP051744.1_3116640_3117240_-	PRK04976, torD, chaperone protein TorD; Validated	NA|847aa|down_6|NZ_CP051744.1_3117236_3119777_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_7|NZ_CP051744.1_3119776_3120949_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_8|NZ_CP051744.1_3121078_3121771_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|343aa|down_9|NZ_CP051744.1_3121743_3122772_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	5	3233394-3234201	4,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	0	0	NA	NA	I-F:I-F:I-F	13,13,12	13	TypeI-F	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA	NA|431aa|up_9|NZ_CP051744.1_3218708_3220001_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP051744.1_3220091_3221435_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP051744.1_3221445_3222057_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1356aa|up_6|NZ_CP051744.1_3222215_3226283_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP051744.1_3226417_3226912_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP051744.1_3227455_3228421_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP051744.1_3228543_3230310_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP051744.1_3230310_3232032_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP051744.1_3232073_3232778_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP051744.1_3233062_3233281_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|down_0|NZ_CP051744.1_3234739_3235294_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|down_1|NZ_CP051744.1_3235304_3236306_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|down_2|NZ_CP051744.1_3236316_3237240_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|down_3|NZ_CP051744.1_3237236_3238544_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|down_4|NZ_CP051744.1_3238873_3242107_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|down_5|NZ_CP051744.1_3242103_3243087_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_6|NZ_CP051744.1_3244100_3246377_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_7|NZ_CP051744.1_3246407_3246728_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_8|NZ_CP051744.1_3247050_3247275_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_9|NZ_CP051744.1_3247347_3249294_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	6	3243260-3243888	5,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Type I-F	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,28	1	1	3243288-3243319	NZ_CP051745.1_15076-15045	I-F:I-F:I-F	10,10,9	10	TypeI-F	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA	NA|589aa|up_9|NZ_CP051744.1_3228543_3230310_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_8|NZ_CP051744.1_3230310_3232032_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_7|NZ_CP051744.1_3232073_3232778_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_6|NZ_CP051744.1_3233062_3233281_+	PRK00276, infA, translation initiation factor IF-1; Validated	cas6f|185aa|up_5|NZ_CP051744.1_3234739_3235294_-	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f	cas7f|334aa|up_4|NZ_CP051744.1_3235304_3236306_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|308aa|up_3|NZ_CP051744.1_3236316_3237240_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|436aa|up_2|NZ_CP051744.1_3237236_3238544_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	cas3f|1078aa|up_1|NZ_CP051744.1_3238873_3242107_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|328aa|up_0|NZ_CP051744.1_3242103_3243087_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|759aa|down_0|NZ_CP051744.1_3244100_3246377_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP051744.1_3246407_3246728_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP051744.1_3247050_3247275_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP051744.1_3247347_3249294_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP051744.1_3249290_3250406_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP051744.1_3250562_3251513_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP051744.1_3251509_3253168_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP051744.1_3253593_3254289_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP051744.1_3254611_3255511_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP051744.1_3255654_3257307_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	7	4068392-4068482	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	AACGCCTTATCCGGCCTACAAAACTGACAA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA	NA|284aa|up_9|NZ_CP051744.1_4058387_4059239_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|295aa|up_8|NZ_CP051744.1_4059320_4060205_-	pfam04754, Transposase_31, Putative transposase, YhgA-like	NA|127aa|up_7|NZ_CP051744.1_4060478_4060859_+	TIGR00223, Aspartate_1-decarboxylase, L-aspartate-alpha-decarboxylase	NA|410aa|up_6|NZ_CP051744.1_4060862_4062092_-	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins	NA|147aa|up_5|NZ_CP051744.1_4062155_4062596_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|257aa|up_4|NZ_CP051744.1_4062700_4063471_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|309aa|up_3|NZ_CP051744.1_4063467_4064394_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|221aa|up_2|NZ_CP051744.1_4064502_4065165_+	PRK10437, PRK10437, carbonic anhydrase; Provisional	NA|179aa|up_1|NZ_CP051744.1_4065205_4065742_-	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional	NA|797aa|up_0|NZ_CP051744.1_4065947_4068338_+	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family	NA|517aa|down_0|NZ_CP051744.1_4068602_4070153_-	PRK10965, PRK10965, multicopper oxidase; Provisional	NA|116aa|down_1|NZ_CP051744.1_4070318_4070666_+	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS)	NA|289aa|down_2|NZ_CP051744.1_4070771_4071638_+	PRK00811, PRK00811, polyamine aminopropyltransferase	NA|265aa|down_3|NZ_CP051744.1_4071653_4072448_+	PRK05462, PRK05462, adenosylmethionine decarboxylase	NA|121aa|down_4|NZ_CP051744.1_4072485_4072848_-	PRK05248, PRK05248, hypothetical protein; Provisional	NA|866aa|down_5|NZ_CP051744.1_4073022_4075620_-	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated	NA|586aa|down_6|NZ_CP051744.1_4075974_4077732_+	pfam11737, DUF3300, Protein of unknown function (DUF3300)	NA|475aa|down_7|NZ_CP051744.1_4077973_4079398_-	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed	NA|631aa|down_8|NZ_CP051744.1_4079605_4081498_-	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated	NA|888aa|down_9|NZ_CP051744.1_4081512_4084176_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	8	4144126-4144243	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	TTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA|141aa|up_4|NZ_CP051744.1_4137867_4138290_-,NA|283aa|up_3|NZ_CP051744.1_4138296_4139145_-,NA	NA|552aa|up_9|NZ_CP051744.1_4131764_4133420_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_8|NZ_CP051744.1_4133583_4134567_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_7|NZ_CP051744.1_4134542_4136153_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_6|NZ_CP051744.1_4136136_4136835_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_5|NZ_CP051744.1_4136948_4137713_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|141aa|up_4|NZ_CP051744.1_4137867_4138290_-	NA	NA|283aa|up_3|NZ_CP051744.1_4138296_4139145_-	NA	NA|282aa|up_2|NZ_CP051744.1_4139659_4140505_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP051744.1_4140843_4142544_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP051744.1_4142554_4144057_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP051744.1_4144256_4144952_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP051744.1_4145026_4147378_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP051744.1_4147542_4150449_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP051744.1_4150460_4151120_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP051744.1_4151269_4152085_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP051744.1_4152339_4154694_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP051744.1_4154746_4156033_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP051744.1_4156032_4157022_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP051744.1_4157018_4157840_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP051744.1_4157842_4158220_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	9	4167672-4167804	4	PILER-CR	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA	NA|105aa|up_9|NZ_CP051744.1_4159071_4159386_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP051744.1_4159388_4159622_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP051744.1_4159707_4160187_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP051744.1_4160378_4162241_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP051744.1_4162233_4162764_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP051744.1_4162871_4164203_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP051744.1_4164261_4164549_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP051744.1_4164545_4165832_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP051744.1_4165854_4166796_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP051744.1_4166810_4167581_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP051744.1_4168053_4169568_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP051744.1_4169598_4170741_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP051744.1_4170868_4172086_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP051744.1_4172158_4173712_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP051744.1_4173820_4174606_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP051744.1_4174611_4175202_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP051744.1_4175320_4175716_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP051744.1_4175976_4179198_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP051744.1_4179215_4180364_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP051744.1_4180822_4181644_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	10	4350822-4350961	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA	NA|278aa|up_9|NZ_CP051744.1_4334911_4335745_-	pfam13708, DUF4942, Domain of unknown function (DUF4942)	NA|519aa|up_8|NZ_CP051744.1_4336051_4337608_+	TIGR00497, hsdM, type I restriction system adenine methylase (hsdM)	NA|293aa|up_7|NZ_CP051744.1_4337604_4338483_+	cd17268, RMtype1_S_Ara36733I_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|378aa|up_6|NZ_CP051744.1_4338592_4339726_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|1039aa|up_5|NZ_CP051744.1_4340411_4343528_+	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|340aa|up_4|NZ_CP051744.1_4344032_4345052_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP051744.1_4345181_4346684_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP051744.1_4346844_4347927_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP051744.1_4347926_4349027_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP051744.1_4349293_4350805_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP051744.1_4351062_4351506_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP051744.1_4351505_4354361_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP051744.1_4354407_4355595_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP051744.1_4355787_4356291_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP051744.1_4356468_4356885_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP051744.1_4357046_4358051_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP051744.1_4358095_4358548_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP051744.1_4359225_4360446_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|315aa|down_8|NZ_CP051744.1_4360456_4361401_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP051744.1_4361411_4362416_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
GCF_012934785.1_ASM1293478v1	NZ_CP051744	Escherichia coli strain SCU-484 chromosome, complete genome	11	4913357-4913483	9	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	Orphan	TGCCGGATGCGGCACGAGTGCCTTATCCGGCCTAC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas14j,WYL	NA,NA|93aa|down_9|NZ_CP051744.1_4924496_4924775_-	NA|233aa|up_9|NZ_CP051744.1_4902403_4903102_+	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR	NA|458aa|up_8|NZ_CP051744.1_4903098_4904472_+	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA	NA|225aa|up_7|NZ_CP051744.1_4904577_4905252_-	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional	NA|328aa|up_6|NZ_CP051744.1_4905400_4906384_-	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter	NA|207aa|up_5|NZ_CP051744.1_4906643_4907264_-	PRK10925, PRK10925, superoxide dismutase [Mn]	NA|345aa|up_4|NZ_CP051744.1_4907549_4908584_+	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT)	NA|313aa|up_3|NZ_CP051744.1_4908580_4909519_-	PRK13500, PRK13500, HTH-type transcriptional activator RhaR	NA|279aa|up_2|NZ_CP051744.1_4909502_4910339_-	PRK13503, PRK13503, HTH-type transcriptional activator RhaS	NA|490aa|up_1|NZ_CP051744.1_4910626_4912096_+	PRK10640, rhaB, rhamnulokinase; Provisional	NA|420aa|up_0|NZ_CP051744.1_4912092_4913352_+	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|275aa|down_0|NZ_CP051744.1_4913536_4914361_+	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|105aa|down_1|NZ_CP051744.1_4914370_4914685_+	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase	NA|465aa|down_2|NZ_CP051744.1_4914725_4916120_-	pfam16966, Porin_8, Porin-like glycoporin RafY	NA|278aa|down_3|NZ_CP051744.1_4917115_4917949_-	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD	NA|1017aa|down_4|NZ_CP051744.1_4918142_4921193_+	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit	NA|301aa|down_5|NZ_CP051744.1_4921205_4922108_+	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing	NA|212aa|down_6|NZ_CP051744.1_4922104_4922740_+	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit	NA|310aa|down_7|NZ_CP051744.1_4922736_4923666_+	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional	NA|73aa|down_8|NZ_CP051744.1_4923881_4924100_-	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|93aa|down_9|NZ_CP051744.1_4924496_4924775_-	NA
