assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	1	1142803-1143380	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Unclear	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA	NA|434aa|up_9|NZ_CP051694.1_1130255_1131557_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP051694.1_1131604_1133839_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|264aa|up_7|NZ_CP051694.1_1133934_1134726_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP051694.1_1134953_1136591_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP051694.1_1136677_1137976_+	PRK00077, eno, enolase; Provisional	NA|305aa|up_4|NZ_CP051694.1_1138035_1138950_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP051694.1_1138946_1140095_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_2|NZ_CP051694.1_1140109_1141003_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP051694.1_1141016_1141619_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP051694.1_1141791_1142463_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP051694.1_1144018_1145497_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP051694.1_1145523_1146801_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP051694.1_1147119_1147905_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP051694.1_1147974_1149429_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP051694.1_1149450_1150860_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP051694.1_1150837_1151617_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP051694.1_1151580_1152474_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP051694.1_1152620_1153196_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP051694.1_1153212_1153473_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP051694.1_1153463_1154735_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	2	1169083-1170209	2,2,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGG	29,29,29,30	0	0	NA	NA	I-E:I-E:I-E:I-E	14,17,18,14	18	TypeI-E	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA	NA|571aa|up_9|NZ_CP051694.1_1157292_1159005_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP051694.1_1159078_1159813_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_7|NZ_CP051694.1_1160077_1160230_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_6|NZ_CP051694.1_1160424_1163124_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_5|NZ_CP051694.1_1163221_1164784_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_4|NZ_CP051694.1_1164780_1165317_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_3|NZ_CP051694.1_1165331_1166387_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_2|NZ_CP051694.1_1166397_1167144_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_1|NZ_CP051694.1_1167125_1167776_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP051694.1_1168692_1168986_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP051694.1_1170229_1171267_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP051694.1_1171518_1172427_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP051694.1_1172428_1173856_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP051694.1_1173855_1174461_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP051694.1_1174510_1174834_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP051694.1_1175027_1175339_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP051694.1_1175357_1176068_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP051694.1_1176067_1176547_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP051694.1_1176543_1177593_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP051694.1_1177573_1178335_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	3	2362782-2362905	3	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA|30aa|down_7|NZ_CP051694.1_2371802_2371892_+	NA|471aa|up_9|NZ_CP051694.1_2352235_2353648_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051694.1_2354204_2354414_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051694.1_2354869_2355496_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051694.1_2355516_2357619_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051694.1_2357631_2358270_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051694.1_2358333_2359002_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051694.1_2358998_2359784_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051694.1_2359787_2360600_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051694.1_2360611_2362216_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051694.1_2362341_2362647_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051694.1_2363220_2364477_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051694.1_2364517_2365891_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051694.1_2366105_2366747_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051694.1_2366786_2367935_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051694.1_2368225_2369437_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051694.1_2369549_2370482_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051694.1_2370478_2371504_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051694.1_2371802_2371892_+	NA	NA|390aa|down_8|NZ_CP051694.1_2372057_2373227_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051694.1_2373372_2373954_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	4	3095353-3095444	4	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA|70aa|up_9|NZ_CP051694.1_3084604_3084814_-,NA	NA|70aa|up_9|NZ_CP051694.1_3084604_3084814_-	NA	NA|1321aa|up_8|NZ_CP051694.1_3084868_3088831_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051694.1_3088870_3089509_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051694.1_3089796_3090888_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051694.1_3090887_3091580_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051694.1_3091591_3091978_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|271aa|up_3|NZ_CP051694.1_3091985_3092798_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051694.1_3092794_3093385_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051694.1_3093395_3093890_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|441aa|up_0|NZ_CP051694.1_3093910_3095233_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051694.1_3095867_3096464_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051694.1_3096484_3096712_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051694.1_3096749_3097991_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP051694.1_3098283_3099540_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP051694.1_3099799_3100720_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP051694.1_3100719_3101025_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP051694.1_3101117_3101717_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP051694.1_3101713_3104260_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP051694.1_3104259_3105432_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP051694.1_3105561_3106254_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	5	3222052-3222259	5,3,4	CRISPRCasFinder,CRT,PILER-CR	no		cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TTTCTAAGCTGCCTGTACGGCAGTGAAC,GATTTCTAAGCTGCCTGTACGGCAGTGAAC	28,28,30	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA	NA|431aa|up_9|NZ_CP051694.1_3206697_3207990_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP051694.1_3208080_3209424_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP051694.1_3209434_3210046_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1369aa|up_6|NZ_CP051694.1_3210204_3214311_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP051694.1_3214445_3214940_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|322aa|up_4|NZ_CP051694.1_3215485_3216451_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP051694.1_3216573_3218340_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP051694.1_3218340_3220062_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP051694.1_3220103_3220808_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP051694.1_3221092_3221311_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|759aa|down_0|NZ_CP051694.1_3222471_3224748_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP051694.1_3224778_3225099_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|75aa|down_2|NZ_CP051694.1_3225421_3225646_+	PRK09937, PRK09937, cold shock-like protein CspD	NA|649aa|down_3|NZ_CP051694.1_3225717_3227664_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP051694.1_3227660_3228776_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP051694.1_3228932_3229883_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP051694.1_3229879_3231538_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_7|NZ_CP051694.1_3231963_3232659_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_8|NZ_CP051694.1_3233139_3234039_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_9|NZ_CP051694.1_3234182_3235835_+	PRK05290, PRK05290, hybrid cluster protein; Provisional
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	6	3987105-3987246	6	CRISPRCasFinder	no	RT	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Unclear	GTTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCA	41	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA	NA|549aa|up_9|NZ_CP051694.1_3977416_3979063_-	PRK07193, fliF, flagellar MS-ring protein; Reviewed	NA|114aa|up_8|NZ_CP051694.1_3979067_3979409_-	pfam02049, FliE, Flagellar hook-basal body complex protein FliE	NA|327aa|up_7|NZ_CP051694.1_3979423_3980404_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|284aa|up_6|NZ_CP051694.1_3980791_3981643_+	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term	NA|124aa|up_5|NZ_CP051694.1_3981635_3982007_+	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN	NA|251aa|up_4|NZ_CP051694.1_3982003_3982756_+	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed	NA|91aa|up_3|NZ_CP051694.1_3982758_3983031_+	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion]	NA|261aa|up_2|NZ_CP051694.1_3983032_3983815_+	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion]	NA|380aa|up_1|NZ_CP051694.1_3983804_3984944_+	PRK05702, flhB, flagellar type III secretion system protein FlhB	NA|698aa|up_0|NZ_CP051694.1_3984927_3987021_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|405aa|down_0|NZ_CP051694.1_3987348_3988562_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|166aa|down_1|NZ_CP051694.1_3988720_3989218_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|250aa|down_2|NZ_CP051694.1_3989394_3990144_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_3|NZ_CP051694.1_3990444_3991185_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_4|NZ_CP051694.1_3991155_3991923_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_5|NZ_CP051694.1_3992128_3992707_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_6|NZ_CP051694.1_3992946_3995391_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_7|NZ_CP051694.1_3995433_3995907_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_8|NZ_CP051694.1_3996060_3996831_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|163aa|down_9|NZ_CP051694.1_3997102_3997591_-	TIGR03765, conserved_hypothetical_protein, integrating conjugative element protein, PFL_4695 family
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	7	4224224-4224356	5	PILER-CR	no		cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA	NA|126aa|up_9|NZ_CP051694.1_4214927_4215305_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP051694.1_4215311_4216154_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP051694.1_4216231_4216711_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP051694.1_4216902_4218765_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP051694.1_4218757_4219288_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP051694.1_4219395_4220727_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP051694.1_4220785_4221073_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP051694.1_4221069_4222356_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP051694.1_4222406_4223348_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP051694.1_4223362_4224133_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP051694.1_4224605_4226120_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP051694.1_4226150_4227293_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP051694.1_4227421_4228639_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP051694.1_4228712_4230266_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP051694.1_4230374_4231160_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP051694.1_4231165_4231756_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP051694.1_4231961_4232357_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP051694.1_4232617_4235836_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP051694.1_4235853_4237002_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP051694.1_4237457_4238279_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	8	4310494-4310658	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	CCGTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACCAAACCTGCACGTTAG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA	NA|288aa|up_9|NZ_CP051694.1_4301426_4302290_+	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family	NA|260aa|up_8|NZ_CP051694.1_4302808_4303588_-	PRK11449, PRK11449, metal-dependent hydrolase	NA|358aa|up_7|NZ_CP051694.1_4303584_4304658_-	COG4667, COG4667, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]	NA|54aa|up_6|NZ_CP051694.1_4304779_4304941_-	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|202aa|up_5|NZ_CP051694.1_4305067_4305673_-	PRK10568, PRK10568, molecular chaperone OsmY	NA|530aa|up_4|NZ_CP051694.1_4306065_4307655_-	PRK00741, prfC, peptide chain release factor 3; Provisional	NA|226aa|up_3|NZ_CP051694.1_4307745_4308423_-	PRK09449, PRK09449, dUMP phosphatase; Provisional	NA|149aa|up_2|NZ_CP051694.1_4308437_4308884_-	PRK09491, rimI, ribosomal-protein-alanine N-acetyltransferase; Provisional	NA|138aa|up_1|NZ_CP051694.1_4308852_4309266_-	PRK06856, PRK06856, DNA polymerase III subunit psi; Validated	NA|344aa|up_0|NZ_CP051694.1_4309368_4310400_+	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|79aa|down_0|NZ_CP051694.1_4311139_4311376_-	pfam07256, DUF1435, Protein of unknown function (DUF1435)	NA|263aa|down_1|NZ_CP051694.1_4311516_4312305_+	PRK10647, PRK10647, ferric iron reductase involved in ferric hydroximate transport; Provisional	NA|226aa|down_2|NZ_CP051694.1_4312342_4313020_-	PRK11475, PRK11475, DNA-binding transcriptional activator BglJ; Provisional	NA|242aa|down_3|NZ_CP051694.1_4312977_4313703_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|257aa|down_4|NZ_CP051694.1_4314321_4315092_+	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]	NA|158aa|down_5|NZ_CP051694.1_4315082_4315556_+	PRK09917, PRK09917, threonine/serine exporter	NA|180aa|down_6|NZ_CP051694.1_4315662_4316202_+	PRK02854, PRK02854, primosomal protein DnaT	NA|246aa|down_7|NZ_CP051694.1_4316204_4316942_+	PRK07952, PRK07952, DNA replication protein DnaC; Validated	NA|165aa|down_8|NZ_CP051694.1_4316990_4317485_+	PRK11667, PRK11667, hypothetical protein; Provisional	NA|764aa|down_9|NZ_CP051694.1_4317738_4320030_+	PRK03776, PRK03776, phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase
GCF_012934715.1_ASM1293471v1	NZ_CP051694	Escherichia coli strain SCU-313 chromosome, complete genome	9	4481226-4481363	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	Orphan	GAACTCGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGC	42	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,RT,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,c2c9_V-U4,DEDDh,cas14j,DinG	NA,NA|77aa|down_6|NZ_CP051694.1_4488389_4488620_-,NA|118aa|down_7|NZ_CP051694.1_4488606_4488960_-,NA|325aa|down_8|NZ_CP051694.1_4488975_4489950_-	NA|340aa|up_9|NZ_CP051694.1_4469390_4470410_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP051694.1_4470413_4470977_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP051694.1_4471193_4472225_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP051694.1_4472248_4473013_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP051694.1_4473074_4474394_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP051694.1_4474460_4475459_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP051694.1_4475536_4477039_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP051694.1_4477199_4478282_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP051694.1_4478281_4479382_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP051694.1_4479648_4481160_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP051694.1_4481415_4481859_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP051694.1_4481858_4484714_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|399aa|down_2|NZ_CP051694.1_4484769_4485966_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP051694.1_4486158_4486662_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP051694.1_4486707_4487124_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP051694.1_4487285_4488290_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|77aa|down_6|NZ_CP051694.1_4488389_4488620_-	NA	NA|118aa|down_7|NZ_CP051694.1_4488606_4488960_-	NA	NA|325aa|down_8|NZ_CP051694.1_4488975_4489950_-	NA	NA|151aa|down_9|NZ_CP051694.1_4490071_4490524_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]
