assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_012934695.1_ASM1293469v1	NZ_CP051751	Escherichia coli strain SCU-301 chromosome, complete genome	1	1164286-1164558	1,1	CRISPRCasFinder,CRT	no	cas3	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GAGTTCCCCACGTCAGCGGGGATAAACCG,GAGTTCCCCNCGNCAGCGGGGATAAACCG	29,29	0	0	NA	NA	I-E:I-E	4,4	4	Unclear	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|83aa|up_9|NZ_CP051751.1_1154796_1155045_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_8|NZ_CP051751.1_1155044_1155380_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_7|NZ_CP051751.1_1155451_1156243_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_6|NZ_CP051751.1_1156470_1158108_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_5|NZ_CP051751.1_1158194_1159493_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_4|NZ_CP051751.1_1159552_1160425_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|up_3|NZ_CP051751.1_1160430_1161579_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|298aa|up_2|NZ_CP051751.1_1161593_1162487_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP051751.1_1162500_1163103_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP051751.1_1163275_1163947_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP051751.1_1165195_1166674_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP051751.1_1166700_1167978_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP051751.1_1168294_1169080_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP051751.1_1169149_1170604_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP051751.1_1170625_1172035_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP051751.1_1172012_1172792_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP051751.1_1172755_1173649_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP051751.1_1173796_1174372_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP051751.1_1174388_1174649_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP051751.1_1174639_1175911_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_012934695.1_ASM1293469v1	NZ_CP051751	Escherichia coli strain SCU-301 chromosome, complete genome	2	1190259-1191019	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	TypeI-E	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|245aa|up_9|NZ_CP051751.1_1180254_1180989_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP051751.1_1181253_1181406_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP051751.1_1181600_1184300_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP051751.1_1184397_1185960_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP051751.1_1185956_1186493_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP051751.1_1186507_1187563_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP051751.1_1187573_1188320_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP051751.1_1188301_1188952_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP051751.1_1188948_1189872_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP051751.1_1189868_1190162_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP051751.1_1191100_1192138_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP051751.1_1192390_1193299_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP051751.1_1193300_1194728_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP051751.1_1194727_1195333_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP051751.1_1195382_1195706_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP051751.1_1195899_1196211_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP051751.1_1196229_1196940_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP051751.1_1196939_1197419_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP051751.1_1197415_1198465_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP051751.1_1198445_1199207_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_012934695.1_ASM1293469v1	NZ_CP051751	Escherichia coli strain SCU-301 chromosome, complete genome	3	2340033-2340156	3	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP051751.1_2349052_2349142_+	NA|471aa|up_9|NZ_CP051751.1_2329484_2330897_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP051751.1_2331453_2331663_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP051751.1_2332119_2332746_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP051751.1_2332766_2334869_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP051751.1_2334881_2335520_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP051751.1_2335583_2336252_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP051751.1_2336248_2337034_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP051751.1_2337037_2337850_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP051751.1_2337861_2339466_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP051751.1_2339591_2339897_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP051751.1_2340470_2341727_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP051751.1_2341767_2343141_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP051751.1_2343355_2343997_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP051751.1_2344036_2345185_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP051751.1_2345475_2346687_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP051751.1_2346799_2347732_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP051751.1_2347728_2348754_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP051751.1_2349052_2349142_+	NA	NA|390aa|down_8|NZ_CP051751.1_2349307_2350477_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP051751.1_2350622_2351204_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_012934695.1_ASM1293469v1	NZ_CP051751	Escherichia coli strain SCU-301 chromosome, complete genome	4	3037199-3037290	4	CRISPRCasFinder	no		cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP051751.1_3026449_3026659_-,NA	NA|70aa|up_9|NZ_CP051751.1_3026449_3026659_-	NA	NA|1321aa|up_8|NZ_CP051751.1_3026713_3030676_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP051751.1_3030715_3031354_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP051751.1_3031641_3032733_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP051751.1_3032732_3033425_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP051751.1_3033436_3033823_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP051751.1_3033830_3034631_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP051751.1_3034640_3035231_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP051751.1_3035241_3035736_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP051751.1_3035756_3037085_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP051751.1_3037713_3038310_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP051751.1_3038330_3038558_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP051751.1_3038595_3039837_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP051751.1_3040129_3041386_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP051751.1_3041645_3042566_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP051751.1_3042565_3042871_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP051751.1_3043022_3043622_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP051751.1_3043618_3046165_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP051751.1_3046164_3047337_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP051751.1_3047466_3048159_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_012934695.1_ASM1293469v1	NZ_CP051751	Escherichia coli strain SCU-301 chromosome, complete genome	5	4125441-4125573	2	PILER-CR	no		cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|105aa|up_9|NZ_CP051751.1_4116813_4117128_-	pfam01845, CcdB, CcdB protein	NA|78aa|up_8|NZ_CP051751.1_4117130_4117364_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP051751.1_4117449_4117929_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP051751.1_4118120_4119983_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP051751.1_4119975_4120506_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP051751.1_4120613_4121945_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP051751.1_4122002_4122290_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP051751.1_4122286_4123573_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP051751.1_4123623_4124565_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP051751.1_4124579_4125350_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP051751.1_4125822_4127337_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP051751.1_4127367_4128510_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP051751.1_4128638_4129856_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP051751.1_4129929_4131483_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP051751.1_4131591_4132377_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP051751.1_4132382_4132973_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP051751.1_4133091_4133487_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP051751.1_4133747_4136969_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP051751.1_4136986_4138135_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP051751.1_4138590_4139412_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_012934695.1_ASM1293469v1	NZ_CP051751	Escherichia coli strain SCU-301 chromosome, complete genome	6	4383770-4383909	5	CRISPRCasFinder	no		cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGTTATTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACACA	44	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|340aa|up_9|NZ_CP051751.1_4371980_4373000_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|188aa|up_8|NZ_CP051751.1_4373003_4373567_-	PRK09825, idnK, gluconokinase	NA|344aa|up_7|NZ_CP051751.1_4373783_4374815_+	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional	NA|255aa|up_6|NZ_CP051751.1_4374838_4375603_+	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional	NA|440aa|up_5|NZ_CP051751.1_4375667_4376987_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|333aa|up_4|NZ_CP051751.1_4377053_4378052_+	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|501aa|up_3|NZ_CP051751.1_4378129_4379632_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP051751.1_4379792_4380875_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP051751.1_4380874_4381975_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP051751.1_4382241_4383753_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP051751.1_4384010_4384454_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP051751.1_4384453_4387309_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP051751.1_4387355_4388543_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP051751.1_4388735_4389239_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP051751.1_4389415_4389832_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP051751.1_4389993_4390998_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP051751.1_4391042_4391495_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|407aa|down_7|NZ_CP051751.1_4392172_4393393_+	PRK01388, PRK01388, arginine deiminase; Provisional	NA|311aa|down_8|NZ_CP051751.1_4393403_4394336_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|335aa|down_9|NZ_CP051751.1_4394359_4395364_+	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated
